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On the value of nuclear and mitochondrial gene sequences for reconstructing the phylogeny of vanilloid orchids (Vanilloideae, Orchidaceae)

https://doi.org/10.1093/aob/mcp024
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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A molecular phylogeny of Arceuthobium (Viscaceae) based on nuclear ribosomal DNA internal transcribed spacer sequences
inferredcites →https://doi.org/10.1007/bf00985442openalex-snapshot
Phylogenetics of the slipper orchids (Cypripedioideae, Orchidaceae): Nuclear rDNA ITS sequences
inferredcites →https://doi.org/10.1007/bf02668360openalex-snapshot
Amplification and sequencing of 16/18S rDNA from gel-purified total plant DNA
inferredcites →https://doi.org/10.1007/pl00013873openalex-snapshot
Phylogenetic Relationships of Pogoniinae (Vanilloideae, Orchidaceae): An Herbaceous Example of the Eastern North America-Eastern Asia Phytogeographic Disjunction
inferredcites →https://doi.org/10.1016/j.ympev.2003.10.010openalex-snapshot
Utility of plastid psaB gene sequences for investigating intrafamilial relationships within Orchidaceae
inferredcites →https://doi.org/10.1038/nature06039openalex-snapshot
Dating the origin of the Orchidaceae from a fossil orchid with its pollinator
inferredcites →https://doi.org/10.1043/0363-6445-26.3.643openalex-snapshot
Analysis of Mitochondrial nad1b-c Intron Sequences in Orchidaceae: Utility and Coding of Length-change Characters
inferredcites →https://doi.org/10.1043/0363-6445-26.3.670openalex-snapshot
Phylogenetics of Arethuseae (Orchidaceae) based on plastid matK and rbcL sequences
inferredcites →https://doi.org/10.1071/9780643090149openalex-snapshot
Monocots: Systematics and Evolution
inferredcites →https://doi.org/10.1073/pnas.042694899openalex-snapshot
Punctuated evolution of mitochondrial gene content: High and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution
inferredcites →https://doi.org/10.1073/pnas.97.13.6960openalex-snapshot
Dynamic evolution of plant mitochondrial genomes: Mobile genes and introns and highly variable mutation rates
inferredcites →https://doi.org/10.1080/106351598260923openalex-snapshot
Data Decisiveness, Data Quality, and Incongruence in Phylogenetic Analysis: An Example From the Monocotyledons Using Mitochondrial atp A Sequences
inferredcites →https://doi.org/10.1093/molbev/msj029openalex-snapshot
The Chloroplast Genome of Phalaenopsis aphrodite (Orchidaceae): Comparative Analysis of Evolutionary Rate with that of Grasses and Its Phylogenetic Implications
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025922openalex-snapshot
The phylogenetic potential of entire 26S rDNA sequences in plants
inferredcites →https://doi.org/10.1111/j.1095-8339.2003.00265.xopenalex-snapshot
Genetic discontinuities among populations of Cleistes (Orchidaceae, Vanilloideae) in North America
inferredcites →https://doi.org/10.1111/j.1096-0031.2006.00102.xopenalex-snapshot
Photosystem II gene sequences ofpsbBandpsbCclarify the phylogenetic position ofVanilla(Vanilloideae, Orchidaceae)
inferredcites →https://doi.org/10.1111/j.1365-294x.1995.tb00201.xopenalex-snapshot
A set of universal primers for amplification of polymorphic non‐coding regions of mitochondrial and chloroplast DNA in plants
inferredcites →https://doi.org/10.15517/lank.v7i1-2.19499openalex-snapshot
Sequencing re-defines Spiranthes relationships, with implications for rare and endangered taxa
inferredcites →https://doi.org/10.2307/2445477openalex-snapshot
A Molecular Phylogeny of Arceuthobium (Viscaceae) Based on Nuclear Ribosomal DNA Internal Transcribed Spacer Sequences
inferredcites →https://doi.org/10.2307/2656938openalex-snapshot
A phylogenetic analysis of the Orchidaceae: evidence from rbcL nucleotide sequences
inferredcites →https://doi.org/10.2307/3558366openalex-snapshot
A phylogenetic analysis of Diurideae (Orchidaceae) based on plastid DNA sequence data
inferredcites →https://doi.org/10.2307/3558367openalex-snapshot
Molecular phylogeny of Coelogyne (Epidendroideae; Orchidaceae) based on plastid RFLPS, matK, and nuclear ribosomal ITS sequences: evidence for polyphyly
inferredcites →https://doi.org/10.2307/3558390openalex-snapshot
Phylogenetic relationships in Pleurothallidinae (Orchidaceae): combined evidence from nuclear and plastid DNA sequences
inferredcites →https://doi.org/10.5642/aliso.20062201.05openalex-snapshot
Mitochondrial Data in Monocot Phylologenetics
inferredcites →https://doi.org/10.5642/aliso.20062201.36openalex-snapshot
A Comparison and Combination of Plastid atpB and rbcL Gene Sequences for Inferring Phylogenetic Relationships within Orchidaceae

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A new species of Vanilla (Orchidaceae: Vanilloideae) from Brazil
inferred← citeshttps://doi.org/10.11646/phytotaxa.349.1.7zenodo-depositor-declared
Cleistes pallida (Orchidaceae Vanilloideae): a new species from South Brazil
inferred← citeshttps://doi.org/10.5852/ejt.2017.284zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.1002/9781119377320.ch21openalex-snapshot
Molecular Analysis of a Vanilla Hybrid Cultivated in Costa Rica
inferred← citeshttps://doi.org/10.1002/9781444329353.ch15openalex-snapshot
Molecular Analysis of a Vanilla Hybrid Cultivated in Costa Rica
inferred← citeshttps://doi.org/10.1002/ece3.1642openalex-snapshot
Mining from transcriptomes: 315 single‐copy orthologous genes concatenated for the phylogenetic analyses of Orchidaceae
inferred← citeshttps://doi.org/10.1002/ffj.3379openalex-snapshot
Vanilla authenticity control by DNA barcoding and isotope data aggregation
inferred← citeshttps://doi.org/10.1002/tax.594006openalex-snapshot
Contribution of mitochondrial cox1 intron sequences to the phylogenetics of tribe Orchideae (Orchidaceae): Do the distribution and sequence of this intron in orchids also tell us something about its evolution?
inferred← citeshttps://doi.org/10.1007/978-1-4614-5209-6_5openalex-snapshot
Evolution and Diversification
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Species Interactions of Mycoheterotrophic Plants: Specialization and its Potential Consequences
inferred← citeshttps://doi.org/10.1007/978-3-030-23265-8_18openalex-snapshot
Vanilla (Vanilla spp.) Breeding
inferred← citeshttps://doi.org/10.1007/978-3-319-67903-7_1openalex-snapshot
Vanilla: The Most Popular Flavour
inferred← citeshttps://doi.org/10.1007/978-81-322-2283-5_25openalex-snapshot
Biotechnological Approaches in Improvement of Spices: A Review
inferred← citeshttps://doi.org/10.1007/978-981-15-1554-5_13-1openalex-snapshot
Indian Orchid Germplasm
inferred← citeshttps://doi.org/10.1007/978-981-15-1554-5_13-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-15-3518-5_13openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/978-981-19-3728-6_7openalex-snapshot
Biotechnological Approaches for Improvement of Spices
inferred← citeshttps://doi.org/10.1007/s00572-012-0429-zopenalex-snapshot
Mycorrhizal diversity and specificity in Lecanorchis (Orchidaceae)
inferred← citeshttps://doi.org/10.1007/s10265-020-01244-6openalex-snapshot
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inferred← citeshttps://doi.org/10.1007/s10531-017-1324-xopenalex-snapshot
Phylogeography of endangered Dendrobium moniliforme in East Asia based on mitochondrial DNA sequence variations
inferred← citeshttps://doi.org/10.1007/s11258-019-00936-xopenalex-snapshot
Understanding the impact of plant–arthropod interactions, pollination, and canopy light on the rare orchid, small whorled pogonia (Isotria medeoloides)
inferred← citeshttps://doi.org/10.1007/s12228-011-9215-zopenalex-snapshot
A new species of Vanilla (Orchidaceae: Vanilloideae) from São Paulo, Brazil
inferred← citeshttps://doi.org/10.1016/j.flora.2012.09.011openalex-snapshot
Pollination systems in Pogonieae (Orchidaceae: Vanilloideae): A hypothesis of evolution among reward and rewardless flowers
inferred← citeshttps://doi.org/10.1016/j.hpj.2019.11.005openalex-snapshot
Genome Sequencing Reveals the Role of MADS-box Gene Families in the Floral Morphology Evolution of Orchids
inferred← citeshttps://doi.org/10.1016/j.plantsci.2021.111019openalex-snapshot
Genotyping-By-Sequencing diversity analysis of international Vanilla collections uncovers hidden diversity and enables plant improvement
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.01.021openalex-snapshot
Evidence of transoceanic dispersion of the genus Vanilla based on plastid DNA phylogenetic analysis
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.03.003openalex-snapshot
Phylogenetic relationships within Orchidaceae based on a low-copy nuclear coding gene, Xdh: Congruence with organellar and nuclear ribosomal DNA results
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106540openalex-snapshot
Phylogenomics of Orchidaceae based on plastid and mitochondrial genomes
inferred← citeshttps://doi.org/10.1038/s41598-019-40144-1openalex-snapshot
Genomics-based diversity analysis of Vanilla species using a Vanilla planifolia draft genome and Genotyping-By-Sequencing
inferred← citeshttps://doi.org/10.1093/aob/mcae202openalex-snapshot
Orchid phylogenetics and evolution: history, current status and prospects
inferred← citeshttps://doi.org/10.1093/aob/mcp190openalex-snapshot
Orchid biology: from Linnaeus via Darwin to the 21st century
inferred← citeshttps://doi.org/10.1093/aob/mcv085openalex-snapshot
The importance of associations with saprotrophic non-Rhizoctoniafungi among fully mycoheterotrophic orchids is currently under-estimated: novel evidence from sub-tropical Asia
inferred← citeshttps://doi.org/10.1093/aobpla/plr018openalex-snapshot
Parentage determination of Vanda Miss Joaquim (Orchidaceae) through two chloroplast genes rbcL and matK
inferred← citeshttps://doi.org/10.1093/botlinnean/bow001openalex-snapshot
How many genera of vascular plants are endemic to New Caledonia? A critical review based on phylogenetic evidence
inferred← citeshttps://doi.org/10.1093/gbe/evz024openalex-snapshot
Extensive Losses of Photosynthesis Genes in the Plastome of a Mycoheterotrophic Orchid,Cyrtosia septentrionalis(Vanilloideae: Orchidaceae)
inferred← citeshttps://doi.org/10.1093/sysbio/syaf069openalex-snapshot
Nuclear Phylogenomic Insights into Relationships, Support, and Conflict Among the Early Diverging Lineages of the Megadiverse Epidendroid Orchids
inferred← citeshttps://doi.org/10.1111/1442-1984.12014openalex-snapshot
Floral biology and histochemical analysis of Vanilla edwallii H oehne ( O rchidaceae: V anilloideae): an orchid pollinated by Epicharis ( A pidae: C entridini)
inferred← citeshttps://doi.org/10.1111/boj.12234openalex-snapshot
An updated classification of Orchidaceae
inferred← citeshttps://doi.org/10.1111/mec.14524openalex-snapshot
The giant mycoheterotrophic orchid Erythrorchis altissima is associated mainly with a divergent set of wood‐decaying fungi
inferred← citeshttps://doi.org/10.1111/nph.14994openalex-snapshot
How leaves of mycoheterotrophic plants evolved – from the view point of a developmental biologist
inferred← citeshttps://doi.org/10.1111/plb.12160openalex-snapshot
Floral biology of two V anilloideae ( O rchidaceae) primarily adapted to pollination by euglossine bees
inferred← citeshttps://doi.org/10.1111/plb.13356openalex-snapshot
Evolutionary disruption in the pollination system of Vanilla (Orchidaceae)
inferred← citeshttps://doi.org/10.1186/s12870-025-06850-xopenalex-snapshot
Plastome and transcriptome analysis reveals a degenerated photosynthesis-related pathway in the mycoheterotrophic vanilloid orchid Cyrtosia lindleyana
inferred← citeshttps://doi.org/10.1186/s40529-014-0044-8openalex-snapshot
The seed development of a mycoheterotrophic orchid, Cyrtosia javanica Blume
inferred← citeshttps://doi.org/10.15517/lank.v16i2.26010openalex-snapshot
Recent advances on evolution of pollination systems and reproductive biology of Vanilloideae (Orchidaceae)
inferred← citeshttps://doi.org/10.15517/lank.v20i3.45203openalex-snapshot
A reappraisal of Neotropical Vanilla. With a note on taxonomic inflation and the importance of alpha taxonomy in biological studies
inferred← citeshttps://doi.org/10.15560/12.6.1990openalex-snapshot
First record of Pogoniopsis Rchb. (Orchidaceae: Triphorinae) in Santa Catarina state, southern Brazil
inferred← citeshttps://doi.org/10.1600/036364413x662079openalex-snapshot
A New Species of Lecanorchis Blume (Orchidaceae, Vanilloideae) from Kalimantan, Borneo
inferred← citeshttps://doi.org/10.1600/036364420x15801369352270openalex-snapshot
Materials to the Taxonomic Revision of the Genus Epistephium (Orchidaceae, Vanilloideae) in Colombia
inferred← citeshttps://doi.org/10.17129/botsci.668openalex-snapshot
Wild Vanilla planifolia and its relatives in the Mexican Yucatan Peninsula: Systematic analyses with ISSR and ITS
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inferred← citeshttps://doi.org/10.22533/at.ed.8332112115openalex-snapshot
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inferred← citeshttps://doi.org/10.22533/at.ed.8332112116openalex-snapshot
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inferred← citeshttps://doi.org/10.3103/s0096392510040103openalex-snapshot
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inferred← citeshttps://doi.org/10.3389/fpls.2019.01589openalex-snapshot
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inferred← citeshttps://doi.org/10.3390/ijms24043808openalex-snapshot
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