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Iterative allogamy–autogamy transitions drive actual and incipient speciation during the ongoing evolutionary radiation within the orchid genus Epipactis (Orchidaceae)

https://doi.org/10.1093/aob/mcz103
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.200900181openalex-snapshot
High‐throughput DNA sequencing – concepts and limitations
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Next–generation sequencing and systematics: What can a billion base pairs of DNA sequence data do for you?
inferredcites →https://doi.org/10.1007/978-1-4899-3043-9openalex-snapshot
Plant Breeding Systems
inferredcites →https://doi.org/10.1007/bf00937204openalex-snapshot
Evolution, pollination, and systematics of the tribeNeottieae (Orchidaceae)
inferredcites →https://doi.org/10.1007/bf00985277openalex-snapshot
Local evolution of obligate autogamy inEpipactis helleborine subsp.neerlandica (Orchidaceae)
inferredcites →https://doi.org/10.1007/bf02805263openalex-snapshot
Appearance and disappearance of a weedy orchid,Epipactis helleborine
inferredcites →https://doi.org/10.1007/s00248-003-2034-3openalex-snapshot
Chlorophyllous and Achlorophyllous Specimens of Epipactis microphylla (Neottieae, Orchidaceae) Are Associated with Ectomycorrhizal Septomycetes, including Truffles
inferredcites →https://doi.org/10.1007/s00442-007-0919-4openalex-snapshot
Pollinator-mediated selfing in two deceptive orchids and a review of pollinium tracking studies addressing geitonogamy
inferredcites →https://doi.org/10.1007/s00606-002-0197-xopenalex-snapshot
inferredcites →https://doi.org/10.1007/s00606-008-0082-3openalex-snapshot
Selfing potential in Epipactis palustris, E. helleborine and E. atrorubens (Orchidaceae)
inferredcites →https://doi.org/10.1007/s10592-012-0373-7openalex-snapshot
Strong inbreeding depression and local outbreeding depression in the rewarding orchid Gymnadenia conopsea
inferredcites →https://doi.org/10.1016/j.cub.2008.04.040openalex-snapshot
Orchids Mimic Green-Leaf Volatiles to Attract Prey-Hunting Wasps for Pollination
inferredcites →https://doi.org/10.1016/j.ympev.2018.05.010openalex-snapshot
Phylogenomics resolves evolutionary relationships and provides insights into floral evolution in the tribe Shoreeae (Dipterocarpaceae)
inferredcites →https://doi.org/10.1016/s0169-5347(97)85758-8openalex-snapshot
Species: The units of biodiversity
inferredcites →https://doi.org/10.1016/s0367-2530(17)30787-9openalex-snapshot
The fruit-wasp route to toxic nectar in Epipactis orchids?
inferredcites →https://doi.org/10.1038/hdy.1997.174openalex-snapshot
Isozyme analysis of the reported origin of a new hybrid orchid species, Epipactis youngiana (Young's helleborine), in the British Isles
inferredcites →https://doi.org/10.1038/hdy.2014.105openalex-snapshot
Use of RAD sequencing for delimiting species
inferredcites →https://doi.org/10.1038/nbt1008-1113openalex-snapshot
How to get genomes at one ten-thousandth the cost
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1046/j.1095-8339.2003.00157.xopenalex-snapshot
Molecular phylogenetics and evolution of Orchidinae and selected Habenariinae (Orchidaceae)
inferredcites →https://doi.org/10.1046/j.1365-294x.2002.01610.xopenalex-snapshot
Taxonomic complexity and breeding system transitions: conservation genetics of theEpipactis leptochilacomplex (Orchidaceae)
inferredcites →https://doi.org/10.1080/10635150600755453openalex-snapshot
Approximate Likelihood-Ratio Test for Branches: A Fast, Accurate, and Powerful Alternative
inferredcites →https://doi.org/10.1080/23818107.2016.1262789openalex-snapshot
Chloroplast DNA variation inEpipactis atrorubenspopulations from northern Greece
inferredcites →https://doi.org/10.1086/281999openalex-snapshot
Self Fertilization and Population Variability in the Higher Plants
inferredcites →https://doi.org/10.1093/aob/mcp003openalex-snapshot
Genome size diversity in orchids: consequences and evolution
inferredcites →https://doi.org/10.1093/aob/mcq256openalex-snapshot
Phylogeographic patterns, genetic affinities and morphological differentiation between Epipactis helleborine and related lineages in a Mediterranean glacial refugium
inferredcites →https://doi.org/10.1093/aob/mcu179openalex-snapshot
Molecular phylogeny and evolutionary history of the Eurasiatic orchid genus Himantoglossum s.l. (Orchidaceae)
inferredcites →https://doi.org/10.1093/aob/mcw015openalex-snapshot
Differences in mycorrhizal communities betweenEpipactis palustris,E. helleborineand its presumed sister speciesE. neerlandica
inferredcites →https://doi.org/10.1093/aob/mcw265openalex-snapshot
You are what you get from your fungi: nitrogen stable isotope patterns in Epipactis species
inferredcites →https://doi.org/10.1093/aob/mcx129openalex-snapshot
Integrating restriction site-associated DNA sequencing (RAD-seq) with morphological cladistic analysis clarifies evolutionary relationships among major species groups of bee orchids
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/btr642openalex-snapshot
PGDSpider: an automated data conversion tool for connecting population genetics and genomics programs
inferredcites →https://doi.org/10.1093/botlinnean/bow018openalex-snapshot
Orchids from the past, with a new species in Baltic amber
inferredcites →https://doi.org/10.1093/molbev/msj030openalex-snapshot
Application of Phylogenetic Networks in Evolutionary Studies
inferredcites →https://doi.org/10.1093/molbev/msx149openalex-snapshot
SMS: Smart Model Selection in PhyML
inferredcites →https://doi.org/10.1093/molbev/msy023openalex-snapshot
RADpainter and fineRADstructure: Population Inference from RADseq Data
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/syt032openalex-snapshot
Inferring Phylogeny and Introgression using RADseq Data: An Example from Flowering Plants (Pedicularis: Orobanchaceae)
inferredcites →https://doi.org/10.1093/sysbio/syv076openalex-snapshot
Processes Driving the Adaptive Radiation of a Tropical Tree (Diospyros, Ebenaceae) in New Caledonia, a Biodiversity Hotspot
inferredcites →https://doi.org/10.1093/sysbio/syz035openalex-snapshot
Phylogenomic Relationships of Diploids and the Origins of Allotetraploids in Dactylorhiza (Orchidaceae)
inferredcites →https://doi.org/10.1098/rspb.2004.2807openalex-snapshot
Changing partners in the dark: isotopic and molecular evidence of ectomycorrhizal liaisons between forest orchids and trees
inferredcites →https://doi.org/10.1098/rspb.2013.0133openalex-snapshot
Evolutionary consequences of self-fertilization in plants
inferredcites →https://doi.org/10.1098/rstb.2013.0344openalex-snapshot
The demography and population genomics of evolutionary transitions to self-fertilization in plants
inferredcites →https://doi.org/10.1101/gr.107524.110openalex-snapshot
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
inferredcites →https://doi.org/10.1111/j.1095-8312.2000.tb01214.xopenalex-snapshot
Genetic variation in three species of Epipactis (Orchidaceae): geographic scale and evolutionary inferences
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1438-8677.1981.tb00387.xopenalex-snapshot
ANT, BEE AND FLY POLLINATION IN EPIPACTIS PALUSTRIS (L.) CRANTZ (ORCHIDACEAE)
inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01364.xopenalex-snapshot
Mixotrophy in orchids: insights from a comparative study of green individuals and nonphotosynthetic individuals of Cephalanthera damasonium
inferredcites →https://doi.org/10.1111/j.1558-5646.1955.tb01544.xopenalex-snapshot
SELF-COMPATIBILITY AND ESTABLISHMENT AFTER ‘“LONG-DISTANCE” DISPERSAL
inferredcites →https://doi.org/10.1111/jeb.12787openalex-snapshot
Severe outbreeding and inbreeding depression maintain mating system differentiation in E pipactis( O rchidaceae)
inferredcites →https://doi.org/10.1111/nph.12182openalex-snapshot
Is self‐fertilization an evolutionary dead end?
inferredcites →https://doi.org/10.1111/nph.14221openalex-snapshot
Genetic consequences of Quaternary climatic oscillations in the Himalayas: Primula tibetica as a case study based on restriction site‐associated DNA sequencing
inferredcites →https://doi.org/10.1111/nph.14722openalex-snapshot
Genomic analyses suggest parallel ecological divergence in Heliosperma pusillum (Caryophyllaceae)
inferredcites →https://doi.org/10.1111/oik.04329openalex-snapshot
Immigrant and extrinsic hybrid seed inviability contribute to reproductive isolation between forest and dune ecotypes of Epipactis helleborine (Orchidaceae)
inferredcites →https://doi.org/10.1146/annurev.ecolsys.29.1.263openalex-snapshot
EARLY EVOLUTION OF LAND PLANTS: Phylogeny, Physiology, and Ecology of the Primary Terrestrial Radiation
inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.091704.175539openalex-snapshot
The Evolutionary Enigma of Mixed Mating Systems in Plants: Occurrence, Theoretical Explanations, and Empirical Evidence
inferredcites →https://doi.org/10.1146/annurev.es.01.110170.001515openalex-snapshot
Adaptive Radiation of Reproductive Characteristics in Angiosperms, I: Pollination Mechanisms
inferredcites →https://doi.org/10.1146/annurev.es.18.110187.001321openalex-snapshot
INBREEDING DEPRESSION AND ITS EVOLUTIONARY CONSEQUENCES
inferredcites →https://doi.org/10.1163/9789004632004_008openalex-snapshot
The Influence of Minor Structural Changes in the Flower on Breeding Systems and Speciation in Epipactis Zinn (Orchidaceae)
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1201/9781439833278.ch19openalex-snapshot
Intergrating Molecular and Morphological Evidence of Evolutionary Radiations
inferredcites →https://doi.org/10.1371/journal.pone.0003376openalex-snapshot
Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
inferredcites →https://doi.org/10.1371/journal.pone.0033394openalex-snapshot
Inferring Phylogenies from RAD Sequence Data
inferredcites →https://doi.org/10.1371/journal.pone.0077352openalex-snapshot
Niche Conservatism and the Future Potential Range of Epipactis helleborine (Orchidaceae)
inferredcites →https://doi.org/10.1534/g3.111.000240openalex-snapshot
Stacks: Building and Genotyping Loci De Novo From Short-Read Sequences
inferredcites →https://doi.org/10.18637/jss.v028.c01openalex-snapshot
Beanplot: A Boxplot Alternative for Visual Comparison of Distributions
inferredcites →https://doi.org/10.2307/2419766openalex-snapshot
Biostatistical Studies of Western European Allogamous Populations of the Epipactis helleborine (L.) Crantz Species Group (Orchidaceae)
inferredcites →https://doi.org/10.2307/2806989openalex-snapshot
Plant Breeding Systems.
inferredcites →https://doi.org/10.2307/3558325openalex-snapshot
Is self‐fertilization an evolutionary dead end? Revisiting an old hypothesis with genetic theories and a macroevolutionary approach
inferredcites →https://doi.org/10.2307/3558447openalex-snapshot
Partitioning and diversity of nuclear and organelle markers in native and introduced populations of Epipactis helleborine (Orchidaceae)
inferredcites →https://doi.org/10.3897/phytokeys.94.21346openalex-snapshot
Molecular systematics and the evolution of mycoheterotrophy of tribe Neottieae (Orchidaceae, Epidendroideae)
inferredcites →https://doi.org/10.5735/085.054.0322openalex-snapshot
Epipactis×subtilis(Orchidaceae), a New Hybrid betweenE. albensisandE. purpurata
inferredcites →https://doi.org/10.7717/peerj.5992openalex-snapshot
Morphology and genome size of Epipactis helleborine (L.) Crantz (Orchidaceae) growing in anthropogenic and natural habitats

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/tax.12818zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.11646/phytotaxa.512.2.1zenodo-depositor-declared
A new subspecies of Epipactis microphylla (Orchidaceae; Epidendroideae) from Pantelleria Island (Sicily)
inferred← citeshttps://doi.org/10.1007/s12225-020-9870-xopenalex-snapshot
Implications of next-generation sequencing for the systematics and evolution of the terrestrial orchid genus Epipactis, with particular reference to the British Isles
inferred← citeshttps://doi.org/10.1007/s12225-021-09971-2openalex-snapshot
Challenges of applying monophyly in the phylogenetic shallows: taxonomic reappraisal of the Dactylorhiza maculata group
inferred← citeshttps://doi.org/10.1007/s12225-022-10016-5openalex-snapshot
Systematics and conservation of British and Irish orchids: a "state of the union" assessment to accompany Atlas 2020
inferred← citeshttps://doi.org/10.1016/j.ppees.2022.125674openalex-snapshot
Taxonomic analysis of certain taxa of Epipactis in Slovenia
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.106672openalex-snapshot
Resolving relationships in an exceedingly young Neotropical orchid lineage using Genotyping-by-sequencing data
inferred← citeshttps://doi.org/10.1080/14772000.2021.1877845openalex-snapshot
Phenotypic versus genotypic disparity in the Eurasian orchid genus Gymnadenia: exploring the limits of phylogeny reconstruction
inferred← citeshttps://doi.org/10.1093/aob/mcaa142openalex-snapshot
Impact of mating system on range size and niche breadth inEpipactis(Orchidaceae)
inferred← citeshttps://doi.org/10.1093/aob/mcad010openalex-snapshot
Historical biogeography and local adaptation explain population genetic structure in a widespread terrestrial orchid
inferred← citeshttps://doi.org/10.1093/botlinnean/boaa020openalex-snapshot
Low genetic divergence and variation in coastal dune populations of the widespread terrestrial orchidEpipactis helleborine
inferred← citeshttps://doi.org/10.1093/jxb/eraa467openalex-snapshot
Whole plastomes are not enough: phylogenomic and morphometric exploration at multiple demographic levels of the bee orchid clade Ophrys sect. Sphegodes
inferred← citeshttps://doi.org/10.1111/curt.12556openalex-snapshot
1098. Epipactis dunensis (T.Stephenson & T.A.Stephenson) Godfery
inferred← citeshttps://doi.org/10.1111/jbi.14769openalex-snapshot
The relationship between phylogeny, range size, niche breadth and niche overlap in European orchids (Orchidaceae)
inferred← citeshttps://doi.org/10.1139/cjb-2020-0054openalex-snapshot
What are the genomic consequences for plastids in a mixotrophic orchid (Epipactis helleborine)?
inferred← citeshttps://doi.org/10.1186/s12870-022-03563-3openalex-snapshot
Why does an obligate autogamous orchid produce insect attractants in nectar? – a case study on Epipactis albensis (Orchidaceae)
inferred← citeshttps://doi.org/10.14258/turczaninowia.23.4.6openalex-snapshot
On taxonomic status of two species of orchids (Orchidaceae) from Turkmenistan
inferred← citeshttps://doi.org/10.17129/botsci.3470openalex-snapshot
Allogamy, metaxenia and hybrids in orchids, what do we know about it?
inferred← citeshttps://doi.org/10.2179/0008-7475.86.1.1openalex-snapshot
Integrating Genetics, Morphology, and Fungal Host Specificity in Conservation Studies of a Vulnerable, Selfing, Mycoheterotrophic Orchid (Corallorhiza bentleyi Freudenst.)
inferred← citeshttps://doi.org/10.3389/fevo.2022.894616openalex-snapshot
Range Size and Niche Breadth as Predictors of Climate-Induced Habitat Change in Epipactis (Orchidaceae)
inferred← citeshttps://doi.org/10.3389/fpls.2021.734240openalex-snapshot
Integrative Study of Genotypic and Phenotypic Diversity in the Eurasian Orchid Genus Neotinea
inferred← citeshttps://doi.org/10.3390/applbiosci5030071openalex-snapshot
Plastome Super-Barcoding Readiness of the Flora of Poland: Coverage, Provenance, and the Resolution Gap
inferred← citeshttps://doi.org/10.3390/biology14030241openalex-snapshot
Shape and Size Variability of the Gynostemium in Epipactis helleborine (L.) Crantz (Orchidaceae)
inferred← citeshttps://doi.org/10.3390/d17050337openalex-snapshot
Exploring the Orchid Flora of Montenegro: Ten Newly Identified Taxa
inferred← citeshttps://doi.org/10.3390/plants10091839openalex-snapshot
The Epipactis helleborine Group (Orchidaceae): An Overview of Recent Taxonomic Changes, with an Updated List of Currently Accepted Taxa
inferred← citeshttps://doi.org/10.3390/plants12091761openalex-snapshot
Epipactis bucegensis—A Separate Autogamous Species within the E. helleborine Alliance
inferred← citeshttps://doi.org/10.3390/plants13131776openalex-snapshot
New Cytogenetic Data for the Neottieae Tribe (Orchidaceae) in the Mediterranean Region
inferred← citeshttps://doi.org/10.3390/plants14081193openalex-snapshot
Persistent Habitat Instability and Patchiness, Sexual Attraction, Founder Events, Drift and Selection: A Recipe for Rapid Diversification of Orchids
inferred← citeshttps://doi.org/10.3390/plants15050709openalex-snapshot
Reproductive Success Beyond Pollinators: Microhabitat Effects and Pollen Dynamics in Epipactis bugacensis, a Traditionally Obligately Autogamous Orchid
inferred← citeshttps://doi.org/10.3390/plants9060783openalex-snapshot
A Revision of the Taxonomy and Identification of Epipactis greuteri (Orchidaceae, Neottieae)
inferred← citeshttps://doi.org/10.33928/bib.2021.03.196openalex-snapshot
Distinguishing between Epipactis leptochila (Narrow-lipped Helleborine), Epipactis helleborine (Broad-leaved Helleborine) and their putative hybrid, Epipactis x stephensonii at the Warburg reserve, Oxfordshire
inferred← citeshttps://doi.org/10.5209/mbot.73718openalex-snapshot
Pollination strategy of Gennaria diphylla (Orchidaceae) on the Canary Islands and on Madeira
inferred← citeshttps://doi.org/10.5586/asbp.8934openalex-snapshot
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