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Multiple founder events explain the genetic diversity and structure of the model allopolyploid grass Brachypodium hybridum in the Iberian Peninsula hotspot

https://doi.org/10.1093/aob/mcz169
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/tax.602007openalex-snapshot
Southern European glacial refugia: A tale of tales
inferredcites →https://doi.org/10.1007/1-4020-4904-8_5openalex-snapshot
Refugia within Refugia: Patterns of Phylogeographic Concordance in the Iberian Peninsula
inferredcites →https://doi.org/10.1007/7397_2015_17openalex-snapshot
Phylogeny and Evolution of the Genus Brachypodium
inferredcites →https://doi.org/10.1007/978-3-642-31442-1_14openalex-snapshot
The Early Stages of Polyploidy: Rapid and Repeated Evolution in Tragopogon
inferredcites →https://doi.org/10.1007/s12686-011-9548-7openalex-snapshot
STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method
inferredcites →https://doi.org/10.1016/j.flora.2015.08.001openalex-snapshot
Assessment of genetic diversity and population structure of Tunisian populations of Brachypodium hybridum by SSR markers
inferredcites →https://doi.org/10.1016/j.tplants.2014.05.002openalex-snapshot
Update on the genomics and basic biology of Brachypodium
inferredcites →https://doi.org/10.1016/j.ympev.2018.06.003openalex-snapshot
Reconstructing the origins and the biogeography of species’ genomes in the highly reticulate allopolyploid-rich model grass genus Brachypodium using minimum evolution, coalescence and maximum likelihood approaches
inferredcites →https://doi.org/10.1017/s0016672301005158openalex-snapshot
Molecular Diversity, Structure and Domestication of Grasses
inferredcites →https://doi.org/10.1038/hdy.2011.51openalex-snapshot
Increased inbreeding and strong kinship structure in Taxus baccata estimated from both AFLP and SSR data
inferredcites →https://doi.org/10.1038/nature08747openalex-snapshot
Genome sequencing and analysis of the model grass Brachypodium distachyon
inferredcites →https://doi.org/10.1038/nature09916openalex-snapshot
Ancestral polyploidy in seed plants and angiosperms
inferredcites →https://doi.org/10.1038/nrg.2017.26openalex-snapshot
The evolutionary significance of polyploidy
inferredcites →https://doi.org/10.1093/aob/mcr277openalex-snapshot
The more the better? The role of polyploidy in facilitating plant invasions
inferredcites →https://doi.org/10.1093/aob/mcr294openalex-snapshot
Evolution and taxonomic split of the model grass Brachypodium distachyon
inferredcites →https://doi.org/10.1093/aob/mcw239openalex-snapshot
Diversity and association of phenotypic and metabolomic traits in the close model grassesBrachypodium distachyon,B. staceiandB. hybridum
inferredcites →https://doi.org/10.1093/bioinformatics/btm233openalex-snapshot
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot
Inference of Population Structure Using Multilocus Genotype Data
inferredcites →https://doi.org/10.1093/jhered/esn088openalex-snapshot
Simultaneous Estimation of Null Alleles and Inbreeding Coefficients
inferredcites →https://doi.org/10.1093/molbev/msl018openalex-snapshot
A Chloroplast Genealogy of Hordeum (Poaceae): Long-Term Persisting Haplotypes, Incomplete Lineage Sorting, Regional Extinction, and the Consequences for Phylogenetic Inference
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1105/tpc.114.128439openalex-snapshot
Evolution of the BBAA Component of Bread Wheat during Its History at the Allohexaploid Level
inferredcites →https://doi.org/10.1105/tpc.18.00083openalex-snapshot
Brachypodium: A Monocot Grass Model Genus for Plant Biology
inferredcites →https://doi.org/10.1111/1755-0998.12719openalex-snapshot
StructureSelector : A web‐based software to select and visualize the optimal number of clusters using multiple methods
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/j.1365-294x.2008.04060.xopenalex-snapshot
The phylogeographical history of the Iberian steppe plant Ferula loscosii (Apiaceae): a test of the abundant‐centre hypothesis
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04225.xopenalex-snapshot
Strong population structure characterizes weediness gene evolution in the invasive grass species Brachypodium distachyon
inferredcites →https://doi.org/10.1111/j.1469-1809.1983.tb00993.xopenalex-snapshot
Estimation of fixation indices and gene diversities
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03748.xopenalex-snapshot
Exploiting the Brachypodium Tool Box in cereal and grass research
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1111/jbi.14281openalex-snapshot
The detection of disease clustering and a generalized regression approach.
inferredcites →https://doi.org/10.1111/jse.12253openalex-snapshot
Pure polyploidy: Closing the gaps in autopolyploid research
inferredcites →https://doi.org/10.1111/nph.13698openalex-snapshot
On the relative abundance of autopolyploids and allopolyploids
inferredcites →https://doi.org/10.1111/nph.13755openalex-snapshot
Transcriptome‐derived evidence supports recent polyploidization and a major phylogeographic division in T rithuria submersa ( H ydatellaceae, N ymphaeales)
inferredcites →https://doi.org/10.1111/nph.14276openalex-snapshot
Double trouble: taxonomy and definitions of polyploidy
inferredcites →https://doi.org/10.1111/nph.14926openalex-snapshot
Comparative plastome genomics and phylogenomics of Brachypodium: flowering time signatures, introgression and recombination in recently diverged ecotypes
inferredcites →https://doi.org/10.1111/plb.12639openalex-snapshot
How much do we know about the frequency of hybridisation and polyploidy in the Mediterranean region?
inferredcites →https://doi.org/10.1126/science.aar7191openalex-snapshot
Shifting the limits in wheat research and breeding using a fully annotated reference genome
inferredcites →https://doi.org/10.1139/g2012-039openalex-snapshot
Validation of microsatellite markers for cytotype discrimination in the model grass Brachypodium distachyon
inferredcites →https://doi.org/10.1177/117693430500100003openalex-snapshot
Arlequin (version 3.0): An integrated software package for population genetics data analysis
inferredcites →https://doi.org/10.1186/1471-2229-9-88openalex-snapshot
Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon
inferredcites →https://doi.org/10.1186/s12862-017-0996-xopenalex-snapshot
Environmental isolation explains Iberian genetic diversity in the highly homozygous model grass Brachypodium distachyon
inferredcites →https://doi.org/10.1371/journal.pone.0051058openalex-snapshot
A DNA Barcoding Method to Discriminate between the Model Plant Brachypodium distachyon and Its Close Relatives B. stacei and B. hybridum (Poaceae)
inferredcites →https://doi.org/10.1371/journal.pone.0167171openalex-snapshot
Recreating Stable Brachypodium hybridum Allotetraploids by Uniting the Divergent Genomes of B. distachyon and B. stacei
inferredcites →https://doi.org/10.1534/genetics.105.042788openalex-snapshot
A Bayesian Approach for Discriminating Among Alternative Inheritance Hypotheses in Plant Polyploids: The Allotetraploid Origin of Genus Borderea (Dioscoreaceae)
inferredcites →https://doi.org/10.1534/genetics.108.089581openalex-snapshot
Natural Genetic Variation ofArabidopsis thalianaIs Geographically Structured in the Iberian Peninsula
inferredcites →https://doi.org/10.2307/2399224openalex-snapshot
Polyploidy, Hybridization, and the Invasion of New Habitats
inferredcites →https://doi.org/10.3389/fevo.2018.00117openalex-snapshot
The “Polyploid Hop”: Shifting Challenges and Opportunities Over the Evolutionary Lifespan of Genome Duplications
inferredcites →https://doi.org/10.3732/ajb.0800345openalex-snapshot
Multiple origins promote the ecological amplitude of allopolyploid Aegilops (Poaceae)
inferredcites →https://doi.org/10.3732/ajb.1500128openalex-snapshot
Environmental niche variation and evolutionary diversification of the Brachypodium distachyon grass complex species in their native circum‐Mediterranean range
inferredcites →https://doi.org/10.3732/ajb.1500501openalex-snapshot
Polyploidy: Pitfalls and paths to a paradigm
inferredcites →https://doi.org/10.3835/plantgenome2015.08.0074openalex-snapshot
Population Structure in the Model Grass Brachypodium distachyon Is Highly Correlated with Flowering Differences across Broad Geographic Areas
inferredcites →https://doi.org/10.7717/peerj.2407openalex-snapshot
Genetic structure and diversity of the selfing model grass Brachypodium stacei (Poaceae) in Western Mediterranean: out of the Iberian Peninsula and into the islands

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.722.2.1zenodo-depositor-declared
On the taxonomy and nomenclature of the annual species of the Brachypodium distachyon grass complex (Gramineae, Pooideae)
inferred← citeshttps://doi.org/10.1007/s10530-025-03707-0openalex-snapshot
Exploring genomic diversity and reproductive strategies in three expansion phases of the superdominant Brachypodium rupestre in high mountain grasslands
inferred← citeshttps://doi.org/10.1073/pnas.2304848120openalex-snapshot
Scattered differentiation of unlinked loci across the genome underlines ecological divergence of the selfing grass Brachypodium stacei
inferred← citeshttps://doi.org/10.1080/23818107.2023.2222458openalex-snapshot
Development of SRAP markers to evaluate the genetic variability in Brachypodium distachyon complex
inferred← citeshttps://doi.org/10.1093/aob/mcae096openalex-snapshot
Ploidy as a leaky reproductive barrier: mechanisms, rates and evolutionary significance of interploidy gene flow
inferred← citeshttps://doi.org/10.1101/2025.05.13.653784openalex-snapshot
On the taxonomy and nomenclature of the annual species of the Brachypodium distachyon grass complex (Gramineae, Pooideae)
inferred← citeshttps://doi.org/10.1111/mec.16207openalex-snapshot
Migration without interbreeding: Evolutionary history of a highly selfing Mediterranean grass inferred from whole genomes
inferred← citeshttps://doi.org/10.1111/mec.17513openalex-snapshot
Repeated migration, interbreeding and bottlenecking shaped the phylogeography of the selfing grass Brachypodium stacei
inferred← citeshttps://doi.org/10.1111/plb.13775openalex-snapshot
Impact of barriers on Cyrno‐Sardinian endemisms: A comparative study of population genetics and phylogeography within taxa of Centranthus sect. Nervosae (Caprifoliaceae)
inferred← citeshttps://doi.org/10.1111/tpj.15650openalex-snapshot
Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
inferred← citeshttps://doi.org/10.1186/s12870-026-08570-2openalex-snapshot
Plastome evolution in annual Brachypodium species reveals widespread heteroplasmy and chloroplast capture, lineage-specific codon usage bias, and low positive selection
inferred← citeshttps://doi.org/10.22541/au.164864228.85785532/v1openalex-snapshot
Broad adaptive genetic differentiation in forage quality traits but similar phenotypic plasticity in Tunisian populations of Brachypodium hybridum in response to phosphorus deficiency
inferred← citeshttps://doi.org/10.33612/diss.858147466openalex-snapshot
The angle of repose: Facilitation and its effects on the Brachypodium distachyon grass complex
inferred← citeshttps://doi.org/10.7717/peerj.20787openalex-snapshot
The genetic structure of a Brachypodium hybridum population in a patchy arid landscape is independent of neighboring perennials and stable over two consecutive years
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