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PmliPred: a method based on hybrid model and fuzzy decision for plant miRNA–lncRNA interaction prediction
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Outgoing claims: the papers this work cites, builds on, or argues with.
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New advances of lncRNAs in liver fibrosis, with specific focus on lncRNA–miRNA interactions
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Transcriptome signatures of tomato leaf induced by Phytophthora infestans and functional identification of transcription factor SpWRKY3
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RNA-directed DNA methylation in plants
inferredcites →https://doi.org/10.1007/s11033-013-2852-4openalex-snapshot
An integrated evolutionary analysis of miRNA–lncRNA in mammals
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Generalized Needleman–Wunsch algorithm for the recognition of T-cell epitopes
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Non-Coding RNAs and Their Roles in Stress Response in Plants
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Beyond one-hot encoding: Lower dimensional target embedding
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Review of ensembles of multi-label classifiers: Models, experimental study and prospects
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Predicting miRNA-lncRNA interactions and recognizing their regulatory roles in stress response of plants
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RNA Pol IV and V in gene silencing: Rebel polymerases evolving away from Pol II's rules
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A novel hybrid approach based on fuzzy multi-criteria decision-making tools for assessing sustainable alternatives of power generation in San Andrés Island
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mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide
inferredcites →https://doi.org/10.1038/ng2079openalex-snapshot
Target mimicry provides a new mechanism for regulation of microRNA activity
inferredcites →https://doi.org/10.1038/s41438-018-0017-2openalex-snapshot
Function identification of miR482b, a negative regulator during tomato resistance to Phytophthora infestans
inferredcites →https://doi.org/10.1038/s41438-018-0096-0openalex-snapshot
Tomato lncRNA23468 functions as a competing endogenous RNA to modulate NBS-LRR genes by decoying miR482b in the tomato-Phytophthora infestans interaction
inferredcites →https://doi.org/10.1038/s41598-018-24271-9openalex-snapshot
Recurrent Neural Networks for Multivariate Time Series with Missing Values
inferredcites →https://doi.org/10.1038/srep16946openalex-snapshot
Genome-wide analysis of tomato long non-coding RNAs and identification as endogenous target mimic for microRNA in response to TYLCV infection
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A disaggregated freight transport market model based on agents and fuzzy logic
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RNA regulatory networks in animals and plants: a long noncoding RNA perspective
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Prediction of lncRNAs and their interactions with nucleic acids: benchmarking bioinformatics tools
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Pattern recognition analysis on long noncoding RNAs: a tool for prediction in plants
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DeepMirTar: a deep-learning approach for predicting human miRNA targets
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inferredcites →https://doi.org/10.1093/nar/gkl243openalex-snapshot
RNAhybrid: microRNA target prediction easy, fast and flexible
inferredcites →https://doi.org/10.1093/nar/gkv1215openalex-snapshot
GREENC: a Wiki-based database of plant lncRNAs
inferredcites →https://doi.org/10.1093/nar/gkw679openalex-snapshot
Identify bilayer modules via pseudo-3D clustering: applications to miRNA-gene bilayer networks
inferredcites →https://doi.org/10.1093/nar/gky1141openalex-snapshot
miRBase: from microRNA sequences to function
inferredcites →https://doi.org/10.1093/nar/gkz969openalex-snapshot
NPInter v4.0: an integrated database of ncRNA interactions
inferredcites →https://doi.org/10.1093/pcp/pcv201openalex-snapshot
CANTATAdb: A Collection of Plant Long Non-Coding RNAs
inferredcites →https://doi.org/10.1094/phyto-04-19-0137-ropenalex-snapshot
Genome-Wide Identification of lncRNAs and Analysis of ceRNA Networks During Tomato Resistance to Phytophthora infestans
inferredcites →https://doi.org/10.1104/pp.113.215962openalex-snapshot
Widespread Long Noncoding RNAs as Endogenous Target Mimics for MicroRNAs in Plants
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Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis
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Wheat miR9678 Affects Seed Germination by Generating Phased siRNAs and Modulating Abscisic Acid/Gibberellin Signaling
inferredcites →https://doi.org/10.1111/tpj.13408openalex-snapshot
Comparative transcriptome analysis between resistant and susceptible tomato allows the identification of lnc RNA 16397 conferring resistance to Phytophthora infestans by co‐expressing glutaredoxin
inferredcites →https://doi.org/10.1111/tpj.14173openalex-snapshot
LncRNA33732‐respiratory burst oxidase module associated with WRKY1 in tomato‐ Phytophthora infestans interactions
inferredcites →https://doi.org/10.1186/s12859-018-2441-6openalex-snapshot
Detection of long non–coding RNA homology, a comparative study on alignment and alignment–free metrics
inferredcites →https://doi.org/10.1186/s12864-018-5227-3openalex-snapshot
Prediction of plant-derived xenomiRs from plant miRNA sequences using random forest and one-dimensional convolutional neural network models
inferredcites →https://doi.org/10.1371/journal.pone.0053823openalex-snapshot
Systematic Transcriptome Wide Analysis of lncRNA-miRNA Interactions
inferredcites →https://doi.org/10.1371/journal.pone.0098958openalex-snapshot
Identification of Maize Long Non-Coding RNAs Responsive to Drought Stress
inferredcites →https://doi.org/10.3389/fgene.2019.00236openalex-snapshot
Simultaneous Interrogation of Cancer Omics to Identify Subtypes With Significant Clinical Differences
inferredcites →https://doi.org/10.3389/fgene.2019.00462openalex-snapshot
LncRRIsearch: A Web Server for lncRNA-RNA Interaction Prediction Integrated With Tissue-Specific Expression and Subcellular Localization Data
inferredcites →https://doi.org/10.3389/fgene.2019.00758openalex-snapshot
Predicting lncRNA-miRNA Interaction via Graph Convolution Auto-Encoder
inferredcites →https://doi.org/10.3390/cells8060521openalex-snapshot
A Hybrid Prediction Method for Plant lncRNA-Protein Interaction
inferredcites →https://doi.org/10.3390/genes10040273openalex-snapshot
Prediction of Long Non-Coding RNAs Based on Deep Learning
inferredcites →https://doi.org/10.3390/ijms20051070openalex-snapshot
RPITER: A Hierarchical Deep Learning Framework for ncRNA–Protein Interaction Prediction
inferredcites →https://doi.org/10.4161/rna.26312openalex-snapshot
RNA-directed DNA methylation in plants
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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PmliHFM: Predicting Plant miRNA-lncRNA Interactions with Hybrid Feature Mining Network
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sORFPred: A Method Based on Comprehensive Features and Ensemble Learning to Predict the sORFs in Plant LncRNAs
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LPI-SKMSC: Predicting LncRNA–Protein Interactions with Segmented k-mer Frequencies and Multi-space Clustering
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Plant lncRNA-miRNA Interaction Prediction Based on Counterfactual Heterogeneous Graph Attention Network
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