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FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes

https://doi.org/10.1093/bioinformatics/btg455
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Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1006/geno.2002.6698openalex-snapshot
Profiling Gene Expression Using Onto-Express
inferredcites →https://doi.org/10.1007/0-306-47598-7_7openalex-snapshot
Supervised Neural Networks for Clustering Conditions in DNA Array Data After Reducing Noise by Clustering Gene Expression Profiles
inferredcites →https://doi.org/10.1007/978-0-387-34569-7openalex-snapshot
Methods of Microarray Data Analysis V
inferredcites →https://doi.org/10.1038/75556openalex-snapshot
Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/88213openalex-snapshot
A literature network of human genes for high-throughput analysis of gene expression
inferredcites →https://doi.org/10.1038/ng1033openalex-snapshot
From patterns to pathways: gene expression data analysis comes of age
inferredcites →https://doi.org/10.1093/bib/3.2.154openalex-snapshot
Information extraction in molecular biology
inferredcites →https://doi.org/10.1093/bioinformatics/btf877openalex-snapshot
Identifying differentially expressed genes using false discovery rate controlling procedures
inferredcites →https://doi.org/10.1093/nar/gkg591openalex-snapshot
GEPAS: a web-based resource for microarray gene expression data analysis
inferredcites →https://doi.org/10.1101/gr.116402openalex-snapshot
Using Text Analysis to Identify Functionally Coherent Gene Groups
inferredcites →https://doi.org/10.1111/j.2517-6161.1995.tb02031.xopenalex-snapshot
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
inferredcites →https://doi.org/10.1142/9789812799623_0044openalex-snapshot
EXPLORING GENE EXPRESSION DATA WITH CLASS SCORES
inferredcites →https://doi.org/10.1186/1471-2105-3-35openalex-snapshot
FunSpec: a web-based cluster interpreter for yeast
inferredcites →https://doi.org/10.1186/gb-2003-4-1-r7openalex-snapshot
MAPPFinder: using Gene Ontology and GenMAPP to create a global gene-expression profile from microarray data
inferredcites →https://doi.org/10.1214/aos/1013699998openalex-snapshot
The control of the false discovery rate in multiple testing under dependency
inferredcites →https://doi.org/10.1214/ss/1056397487openalex-snapshot
Multiple Hypothesis Testing in Microarray Experiments
inferredcites →https://doi.org/10.2307/2291234openalex-snapshot
Resampling-Based Multiple Testing.

What points at this work

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inferred← citeshttps://doi.org/10.1016/b978-0-323-91810-7.00009-1openalex-snapshot
Transcriptomics and genetic engineering
inferred← citeshttps://doi.org/10.1016/b978-0-444-62650-9.00016-6openalex-snapshot
Omics Data Integration in Systems Biology
inferred← citeshttps://doi.org/10.1016/b978-012088387-5/50018-2openalex-snapshot
Juvenile and Steroid Hormones in Drosophila melanogaster Longevity
inferred← citeshttps://doi.org/10.1016/j.ab.2006.03.023openalex-snapshot
Strategies for comparing gene expression profiles from different microarray platforms: Application to a case–control experiment
inferred← citeshttps://doi.org/10.1016/j.accinf.2012.08.002openalex-snapshot
How AIS can progress along with ontology research in IS
inferred← citeshttps://doi.org/10.1016/j.actatropica.2007.10.013openalex-snapshot
Exploring functional genomics for drug target and therapeutics discovery in Plasmodia
inferred← citeshttps://doi.org/10.1016/j.ajog.2006.05.002openalex-snapshot
Gene expression profiling of mid to late secretory phase endometrial biopsies from women with menstrual complaint
inferred← citeshttps://doi.org/10.1016/j.ajpath.2012.10.025openalex-snapshot
Differential Gene Expression of Medullary Thyroid Carcinoma Reveals Specific Markers Associated with Genetic Conditions
inferred← citeshttps://doi.org/10.1016/j.anireprosci.2006.09.004openalex-snapshot
Differentially expressed transcripts in shell glands from low and high egg production strains of chickens using cDNA microarrays
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.739992openalex-snapshot
Molecular characterization of four genes encoding abalone insulin-related peptides and their roles in regulation of hemolymph glucose in the Pacific abalone Haliotis discus hannai
inferred← citeshttps://doi.org/10.1016/j.aquatox.2017.11.010openalex-snapshot
Effects of two-hour exposure to environmental and high concentrations of methylmercury on the transcriptome of the macrophyte Elodea nuttallii
inferred← citeshttps://doi.org/10.1016/j.aquatox.2018.07.010openalex-snapshot
Toxicogenomic responses of low level anticancer drug exposures in Daphnia magna
inferred← citeshttps://doi.org/10.1016/j.artmed.2007.08.002openalex-snapshot
Gene Ontology analysis in multiple gene clusters under multiple hypothesis testing framework
inferred← citeshttps://doi.org/10.1016/j.artmed.2008.08.003openalex-snapshot
Formulating and testing hypotheses in functional genomics
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2016.06.007openalex-snapshot
Global regulation of alternative RNA splicing by the SR-rich protein RBM39
inferred← citeshttps://doi.org/10.1016/j.bbamcr.2005.09.005openalex-snapshot
Potentials and pitfalls of DNA array analysis of the endothelial stress response
inferred← citeshttps://doi.org/10.1016/j.bbapap.2006.10.016openalex-snapshot
Prion infection-impaired functional blocks identified by proteomics enlighten the targets and the curing pathways of an anti-prion drug
inferred← citeshttps://doi.org/10.1016/j.bbrc.2009.03.124openalex-snapshot
Comparative proteome analysis using amine-reactive isobaric tagging reagents coupled with 2D LC/MS/MS in 3T3-L1 adipocytes following hypoxia or normoxia
inferred← citeshttps://doi.org/10.1016/j.bbrc.2015.08.071openalex-snapshot
Identification of a PEAK1/ZEB1 signaling axis during TGFβ/fibronectin-induced EMT in breast cancer
inferred← citeshttps://doi.org/10.1016/j.biosystems.2014.06.001openalex-snapshot
An efficient method of exploring simulation models by assimilating literature and biological observational data
inferred← citeshttps://doi.org/10.1016/j.brainres.2011.12.001openalex-snapshot
Expression profiling of synaptic microRNAs from the adult rat brain identifies regional differences and seizure-induced dynamic modulation
inferred← citeshttps://doi.org/10.1016/j.brainres.2012.05.036openalex-snapshot
Brain transcriptomic profiling in idiopathic and LRRK2-associated Parkinson's disease
inferred← citeshttps://doi.org/10.1016/j.canlet.2007.01.012openalex-snapshot
Genome-wide expression analysis using microarray identified complex signaling pathways modulated by hypoxia in nasopharyngeal carcinoma
inferred← citeshttps://doi.org/10.1016/j.cbpc.2017.03.008openalex-snapshot
Acute toxicity, bioaccumulation and effects of dietary transfer of silver from brine shrimp exposed to PVP/PEI-coated silver nanoparticles to zebrafish
inferred← citeshttps://doi.org/10.1016/j.ccr.2010.04.026openalex-snapshot
Integrative Genomic and Proteomic Analyses Identify Targets for Lkb1-Deficient Metastatic Lung Tumors
inferred← citeshttps://doi.org/10.1016/j.cellsig.2009.03.015openalex-snapshot
C3G silencing enhances STI-571-induced apoptosis in CML cells through p38 MAPK activation, but it antagonizes STI-571 inhibitory effect on survival
inferred← citeshttps://doi.org/10.1016/j.celrep.2012.11.024openalex-snapshot
Poised RNA Polymerase II Changes over Developmental Time and Prepares Genes for Future Expression
inferred← citeshttps://doi.org/10.1016/j.chemolab.2010.06.004openalex-snapshot
A multiway approach to data integration in systems biology based on Tucker3 and N-PLS
inferred← citeshttps://doi.org/10.1016/j.cirep.2024.200144openalex-snapshot
Gene expression profiles of white bass (Morone chrysops) and hybrid striped bass (M. chrysops x M. saxatilis) gill tissue following Flavobacterium covae infection
inferred← citeshttps://doi.org/10.1016/j.clinbiochem.2005.12.005openalex-snapshot
Molecular characterization of the developmental gene in eyes: Through data-mining on integrated transcriptome databases
inferred← citeshttps://doi.org/10.1016/j.cmet.2007.03.007openalex-snapshot
Genome-wide Orchestration of Cardiac Functions by the Orphan Nuclear Receptors ERRα and γ
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2006.08.004openalex-snapshot
Identification of critical genes in microarray experiments by a Neuro-Fuzzy approach
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2014.08.023openalex-snapshot
Hierarchical closeness efficiently predicts disease genes in a directed signaling network
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2011.11.007openalex-snapshot
The multi-reference contrast method: Facilitating set enrichment analysis
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2015.03.031openalex-snapshot
Clustering high throughput biological data with B-MST, a minimum spanning tree based heuristic
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2017.07.015openalex-snapshot
Fusion of expression values and protein interaction information using multi-objective optimization for improving gene clustering
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2022.106314openalex-snapshot
YMLA: A comparative platform to carry out functional enrichment analysis for multiple gene lists in yeast
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.05.022openalex-snapshot
Genome-scale mechanistic modeling of signaling pathways made easy: A bioconductor/cytoscape/web server framework for the analysis of omic data
inferred← citeshttps://doi.org/10.1016/j.datak.2006.05.003openalex-snapshot
Measuring semantic similarity between Gene Ontology terms
inferred← citeshttps://doi.org/10.1016/j.dci.2011.01.001openalex-snapshot
Early response of bovine alveolar macrophages to infection with live and heat-killed Mycobacterium bovis
inferred← citeshttps://doi.org/10.1016/j.dib.2022.108602openalex-snapshot
RNA-seq datasets of field rapeseed (Brassica napus) cultures conditioned by Elice16Indures® biostimulator
inferred← citeshttps://doi.org/10.1016/j.dib.2022.108710openalex-snapshot
Heavy metal tolerance in Scopelophila cataractae: Transcriptomic and epigenetic datasets
inferred← citeshttps://doi.org/10.1016/j.dnarep.2009.02.001openalex-snapshot
X-irradiation and bystander effects induce similar changes of transcript profiles in most functional pathways in human melanoma cells
inferred← citeshttps://doi.org/10.1016/j.ebiom.2017.03.001openalex-snapshot
Molecular Evidence for Differential Long-term Outcomes of Early Life Severe Acute Malnutrition
inferred← citeshttps://doi.org/10.1016/j.envexpbot.2022.104970openalex-snapshot
Molecular basis of intraspecific differentiation for heavy metal tolerance in the copper moss Scopelophila cataractae
inferred← citeshttps://doi.org/10.1016/j.eswa.2007.08.007openalex-snapshot
Similar genes discovery system (SGDS): Application for predicting possible pathways by using GO semantic similarity measure
inferred← citeshttps://doi.org/10.1016/j.exger.2008.06.013openalex-snapshot
Short-term consumption of a resveratrol-containing nutraceutical mixture mimics gene expression of long-term caloric restriction in mouse heart
inferred← citeshttps://doi.org/10.1016/j.exphem.2010.04.018openalex-snapshot
Identification of defects in the transcriptional program during lineage-specific in vitro differentiation of CD34+ cells selected from patients with both low- and high-risk myelodysplastic syndrome
inferred← citeshttps://doi.org/10.1016/j.fertnstert.2010.04.063openalex-snapshot
A genomic diagnostic tool for human endometrial receptivity based on the transcriptomic signature
inferred← citeshttps://doi.org/10.1016/j.fertnstert.2011.07.1088openalex-snapshot
Adenomyosis does not affect implantation, but is associated with miscarriage in patients undergoing oocyte donation
inferred← citeshttps://doi.org/10.1016/j.fsi.2022.03.033openalex-snapshot
Comprehensive transcriptome profiling and functional analysis of the meagre (Argyrosomus regius) immune system
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