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Biological network comparison using graphlet degree distribution

https://doi.org/10.1093/bioinformatics/btl301

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Towards a proteome-scale map of the human protein–protein interaction network

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Effect of sampling on topology predictions of protein-protein interaction networks

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Unraveling protein interaction networks with near-optimal efficiency

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Evolutionary conservation of motif constituents in the yeast protein interaction network

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Network motifs in the transcriptional regulation network of Escherichia coli

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Random Geometric Graphs

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Efficient sampling algorithm for estimating subgraph concentrations and detecting network motifs

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Modeling interactome: scale-free or geometric?

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Online Predicted Human Interaction Database

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Efficient estimation of graphlet frequency distributions in protein–protein interaction networks

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ON A CLASS OF SKEW DISTRIBUTION FUNCTIONS

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BIND--The Biomolecular Interaction Network Database

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BIND: the Biomolecular Interaction Network Database

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Human protein reference database as a discovery resource for proteomics

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Scaling and percolation in the small-world network model

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Spectral analysis and the dynamic response of complex networks

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Scale-Rich Metabolic Networks

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Specificity and Stability in Topology of Protein Networks

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Superfamilies of Evolved and Designed Networks

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A Protein Interaction Map of Drosophila melanogaster

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A Map of the Interactome Network of the Metazoan C. elegans

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Emergence of Scaling in Random Networks

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Network Motifs: Simple Building Blocks of Complex Networks

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Introduction to Graph Theory

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On the evolution of random graphs

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Towards a Theory of Scale-Free Graphs: Definition, Properties, and Implications (Extended Version)

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Network analysis of the NetHealth data: exploring co-evolution of individuals’ social network positions and physical activities

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Appraising discrepancies and similarities in semantic networks using concept-centered subnetworks

inferred← citeshttps://doi.org/10.1007/s41109-021-00434-yopenalex-snapshot

Testing biological network motif significance with exponential random graph models

inferred← citeshttps://doi.org/10.1007/s41109-022-00496-6openalex-snapshot

Improving accuracy of expected frequency of uncertain roles based on efficient ensembling

inferred← citeshttps://doi.org/10.1007/s41109-023-00551-wopenalex-snapshot

Surrogate explanations for role discovery on graphs

inferred← citeshttps://doi.org/10.1007/s41109-026-00812-4openalex-snapshot

Counting subgraphs in multiplex networks

inferred← citeshttps://doi.org/10.1007/s41403-021-00306-yopenalex-snapshot

Topological Analysis on Multi-scenario Graphs: Applications Toward Discerning Variability in SARS-CoV-2 and Topic Similarity in Research

inferred← citeshttps://doi.org/10.1007/s41468-023-00125-wopenalex-snapshot

Heat diffusion distance processes: a statistically founded method to analyze graph data sets

inferred← citeshttps://doi.org/10.1007/s44248-025-00032-8openalex-snapshot

A powerful lens for temporal network analysis: temporal motifs

inferred← citeshttps://doi.org/10.1016/b978-0-12-408103-1.00018-2openalex-snapshot

Systems and Network Pharmacology Strategies for Pancreatic Ductal Adenocarcinoma Therapy

inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20429-9openalex-snapshot

Alignment of Protein-Protein Interaction Networks

inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20486-xopenalex-snapshot

Algorithms for Graph and Network Analysis: Clustering and Search of Motifs in Graphs

inferred← citeshttps://doi.org/10.1016/b978-0-12-819350-1.00013-xopenalex-snapshot

Protein interaction networks

inferred← citeshttps://doi.org/10.1016/b978-0-12-824521-7.00008-9openalex-snapshot

Multi-case-based reasoning by syntactic-semantic alignment and discourse analysis

inferred← citeshttps://doi.org/10.1016/b978-0-323-85713-0.00016-5openalex-snapshot

From big data to complex network: a navigation through the maze of drug–target interaction

inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00181-0openalex-snapshot

Algorithms for Graph and Network Analysis: Clustering and Search of Motifs in Graphs

inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00199-8openalex-snapshot

Alignment of Protein-Protein Interaction Networks

inferred← citeshttps://doi.org/10.1016/j.amc.2015.02.042openalex-snapshot

A comparative analysis of the Tanimoto index and graph edit distance for measuring the topological similarity of trees

inferred← citeshttps://doi.org/10.1016/j.apsb.2015.09.005openalex-snapshot

Prediction of the anti-inflammatory mechanisms of curcumin by module-based protein interaction network analysis

inferred← citeshttps://doi.org/10.1016/j.bbrc.2014.01.151openalex-snapshot

Integration, visualization and analysis of human interactome

inferred← citeshttps://doi.org/10.1016/j.cogsys.2018.08.008openalex-snapshot

Graph matching approach and generalized median graph for automatic labeling of cortical sulci with parallel and distributed algorithms

inferred← citeshttps://doi.org/10.1016/j.comnet.2019.107070openalex-snapshot

An improved multi-objective evolutionary algorithm for detecting communities in complex networks with graphlet measure

inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2020.107415openalex-snapshot

ScGSLC: An unsupervised graph similarity learning framework for single-cell RNA-seq data clustering

inferred← citeshttps://doi.org/10.1016/j.compeleceng.2022.107835openalex-snapshot

Structural–Temporal embedding of large-scale dynamic networks with parallel implementation

inferred← citeshttps://doi.org/10.1016/j.copbio.2010.01.003openalex-snapshot

Data integration and analysis of biological networks

inferred← citeshttps://doi.org/10.1016/j.csbj.2014.08.008openalex-snapshot

The role of protein interaction networks in systems biomedicine

inferred← citeshttps://doi.org/10.1016/j.csbj.2021.12.044openalex-snapshot

PSNtools for standalone and web-based structure network analyses of conformational ensembles

inferred← citeshttps://doi.org/10.1016/j.dam.2019.01.011openalex-snapshot

A method for computing local contributions to graph energy based on Estrada–Benzi approach

inferred← citeshttps://doi.org/10.1016/j.dib.2025.111776openalex-snapshot

Graphlet decomposition dataset of Tallinn’s road network from January 2020 OpenStreetMap data

inferred← citeshttps://doi.org/10.1016/j.ecoenv.2026.119869openalex-snapshot

Evaluating machine learning models for predicting pesticide toxicity to honey bees

inferred← citeshttps://doi.org/10.1016/j.eswa.2019.112883openalex-snapshot

A comparative study on network alignment techniques

inferred← citeshttps://doi.org/10.1016/j.eti.2025.104026openalex-snapshot

Industrial symbiosis networks supporting circularity: Understanding complexity, cyclicality and resilience

inferred← citeshttps://doi.org/10.1016/j.fmre.2022.04.013openalex-snapshot

Simulating rise and fall cycles of Vietnam empires

inferred← citeshttps://doi.org/10.1016/j.future.2021.02.005openalex-snapshot

DGSD: Distributed graph representation via graph statistical properties

inferred← citeshttps://doi.org/10.1016/j.future.2021.05.006openalex-snapshot

Detecting evolutionary stages of events on social media: A graph-kernel-based approach

inferred← citeshttps://doi.org/10.1016/j.genrep.2020.100658openalex-snapshot

Screening and identification of potential prognostic biomarkers in bladder urothelial carcinoma: Evidence from bioinformatics analysis

inferred← citeshttps://doi.org/10.1016/j.heliyon.2022.e10222openalex-snapshot

Review and assessment of Boolean approaches for inference of gene regulatory networks

inferred← citeshttps://doi.org/10.1016/j.inffus.2025.103284openalex-snapshot

GL-BKGNN: Graphlet-based Bi-Kernel Interpretable Graph Neural Networks

inferred← citeshttps://doi.org/10.1016/j.ins.2016.01.074openalex-snapshot

Fifty years of graph matching, network alignment and network comparison

inferred← citeshttps://doi.org/10.1016/j.jclepro.2020.123955openalex-snapshot

Input-output networks considering graphlet-based analysis for production optimization: Application in ethylene plants

inferred← citeshttps://doi.org/10.1016/j.jcss.2019.05.004openalex-snapshot

Structural sparsity of complex networks: Bounded expansion in random models and real-world graphs

inferred← citeshttps://doi.org/10.1016/j.jenvman.2025.125284openalex-snapshot

Impacts of Belo Monte dam on fish co-occurrence and artisanal fishing

inferred← citeshttps://doi.org/10.1016/j.joi.2024.101553openalex-snapshot

How do network embeddedness and knowledge stock influence collaboration dynamics? Evidence from patents

inferred← citeshttps://doi.org/10.1016/j.jpdc.2013.12.010openalex-snapshot

Fast parallel algorithms for graph similarity and matching

inferred← citeshttps://doi.org/10.1016/j.mtadv.2023.100425openalex-snapshot

Automated characterization and classification of 3D microstructures: an application to 3D deformation twin networks in titanium

inferred← citeshttps://doi.org/10.1016/j.neucom.2013.04.027openalex-snapshot

Increasing the reliability of protein–protein interaction networks via non-convex semantic embedding

inferred← citeshttps://doi.org/10.1016/j.neucom.2020.12.075openalex-snapshot

NetKI: A kirchhoff index based statistical graph embedding in nearly linear time

inferred← citeshttps://doi.org/10.1016/j.neucom.2023.03.053openalex-snapshot

A multi-scale graph embedding method via multiple corpora

inferred← citeshttps://doi.org/10.1016/j.neucom.2023.126392openalex-snapshot

Learning graph representation by aggregating subgraphs via mutual information maximization

inferred← citeshttps://doi.org/10.1016/j.neunet.2025.107230openalex-snapshot

Multi-level social network alignment via adversarial learning and graphlet modeling

inferred← citeshttps://doi.org/10.1016/j.parco.2015.02.004openalex-snapshot

Parallel color-coding

inferred← citeshttps://doi.org/10.1016/j.patter.2026.101586openalex-snapshot

Graphlet- and motif-based link prediction in large networks

inferred← citeshttps://doi.org/10.1016/j.physa.2015.02.032openalex-snapshot

Noise-tolerant model selection and parameter estimation for complex networks

inferred← citeshttps://doi.org/10.1016/j.physa.2015.05.075openalex-snapshot

Hierarchical sequencing of online social graphs

inferred← citeshttps://doi.org/10.1016/j.physa.2019.04.265openalex-snapshot

Identifying similar networks using structural hierarchy

inferred← citeshttps://doi.org/10.1016/j.physa.2019.123353openalex-snapshot

Automatic generation of adaptive network models based on similarity to the desired complex network

inferred← citeshttps://doi.org/10.1016/j.physa.2022.127496openalex-snapshot

Network specialization: A topological mechanism for the emergence of cluster synchronization

inferred← citeshttps://doi.org/10.1016/j.physa.2023.128549openalex-snapshot

A Network Analysis of the Structure and Dynamics of FX Derivatives Markets

inferred← citeshttps://doi.org/10.1016/j.physrep.2019.12.004openalex-snapshot

Computational network biology: Data, models, and applications

inferred← citeshttps://doi.org/10.1016/j.procs.2012.09.009openalex-snapshot

The Generalized Feed-forward Loop Motif: Definition, Detection and Statistical Significance

inferred← citeshttps://doi.org/10.1016/j.socnet.2024.07.002openalex-snapshot

Exponential random graph models and pendant-triangle statistics

inferred← citeshttps://doi.org/10.1016/j.softx.2026.102578openalex-snapshot

MiNAA-WebApp: A web-based tool for the visualization and analysis of microbiome networks

inferred← citeshttps://doi.org/10.1016/j.tcs.2011.11.034openalex-snapshot

Extended dynamic subgraph statistics using h -index parameterized data structures

inferred← citeshttps://doi.org/10.1016/j.technovation.2026.103512openalex-snapshot

Does knowledge network dual embeddedness promote inter-firm technological collaboration? A multilevel network analysis of the artificial intelligence industry

inferred← citeshttps://doi.org/10.1016/j.tre.2014.08.005openalex-snapshot

Network similarity analysis of air navigation route systems

inferred← citeshttps://doi.org/10.1016/j.visinf.2023.06.004openalex-snapshot

WITHDRAWN: Visual analytics of multivariate networks with representation learning and composite variable construction

inferred← citeshttps://doi.org/10.1016/j.yhbeh.2012.09.013openalex-snapshot

A system biology approach to identify regulatory pathways underlying the neuroendocrine control of female puberty in rats and nonhuman primates

inferred← citeshttps://doi.org/10.1016/j.ymeth.2017.06.033openalex-snapshot

Modeling tumor progression via the comparison of stage-specific graphs

inferred← citeshttps://doi.org/10.1017/9781108649018openalex-snapshot

Quantitative Analysis of Ecological Networks

inferred← citeshttps://doi.org/10.1017/eds.2024.30openalex-snapshot

Graph characterization of higher-order structure in atmospheric chemical reaction mechanisms

showing the first 200 of 795

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