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RelEx—Relation extraction using dependency parse trees

https://doi.org/10.1093/bioinformatics/btl616

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What this work says

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Accurate unlexicalized parsing

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inferred← citeshttps://doi.org/10.1016/j.jbi.2007.11.008openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.theriogenology.2011.11.012openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.tibtech.2010.04.005openalex-snapshot

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inferred← citeshttps://doi.org/10.1016/j.ymeth.2014.10.026openalex-snapshot

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inferred← citeshttps://doi.org/10.1039/c2ib00126hopenalex-snapshot

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inferred← citeshttps://doi.org/10.1042/etls20190003openalex-snapshot

New advances in extracting and learning from protein–protein interactions within unstructured biomedical text data

inferred← citeshttps://doi.org/10.1049/cit2.12086openalex-snapshot

Multi‐head attention graph convolutional network model: End‐to‐end entity and relation joint extraction based on multi‐head attention graph convolutional network

inferred← citeshttps://doi.org/10.1049/joe.2019.1212openalex-snapshot

Using normal dictionaries to extract multiple semantic relationships

inferred← citeshttps://doi.org/10.1061/9780784482889.015openalex-snapshot

Syntactic Approach to Extracting Key Elements of Work Modification Cause in Change-Order Documents

inferred← citeshttps://doi.org/10.1089/cmb.2012.0009openalex-snapshot

Interaction Relation Ontology Learning

inferred← citeshttps://doi.org/10.1093/bib/bbaa054openalex-snapshot

Biomedical named entity recognition and linking datasets: survey and our recent development

inferred← citeshttps://doi.org/10.1093/bib/bbab282openalex-snapshot

Deep learning methods for biomedical named entity recognition: a survey and qualitative comparison

inferred← citeshttps://doi.org/10.1093/bib/bbac282openalex-snapshot

BioRED: a rich biomedical relation extraction dataset

inferred← citeshttps://doi.org/10.1093/bib/bbae132openalex-snapshot

Surveying biomedical relation extraction: a critical examination of current datasets and the proposal of a new resource

inferred← citeshttps://doi.org/10.1093/bib/bbm045openalex-snapshot

Frontiers of biomedical text mining: current progress

inferred← citeshttps://doi.org/10.1093/bib/bbr018openalex-snapshot

Combining literature text mining with microarray data: advances for system biology modeling

inferred← citeshttps://doi.org/10.1093/bib/bbt006openalex-snapshot

Biological network extraction from scientific literature: state of the art and challenges

inferred← citeshttps://doi.org/10.1093/bib/bbw001openalex-snapshot

Bridging semantics and syntax with graph algorithms—state-of-the-art of extracting biomedical relations

inferred← citeshttps://doi.org/10.1093/bioadv/vbae133openalex-snapshot

Evaluating GPT and BERT models for protein–protein interaction identification in biomedical text

inferred← citeshttps://doi.org/10.1093/bioinformatics/btaa993openalex-snapshot

A span-graph neural model for overlapping entity relation extraction in biomedical texts

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae552openalex-snapshot

STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae589openalex-snapshot

Learning to explain is a good biomedical few-shot learner

inferred← citeshttps://doi.org/10.1093/bioinformatics/btm544openalex-snapshot

Kernel approaches for genic interaction extraction

inferred← citeshttps://doi.org/10.1093/bioinformatics/btn631openalex-snapshot

Evaluating contributions of natural language parsers to protein–protein interaction extraction

inferred← citeshttps://doi.org/10.1093/bioinformatics/btp602openalex-snapshot

Evaluation of linguistic features useful in extraction of interactions from PubMed; Application to annotating known, high-throughput and predicted interactions in I2D

inferred← citeshttps://doi.org/10.1093/bioinformatics/btq620openalex-snapshot

A hybrid approach to extract protein–protein interactions

inferred← citeshttps://doi.org/10.1093/bioinformatics/bts042openalex-snapshot

Literature mining of host–pathogen interactions: comparing feature-based supervised learning and language-based approaches

inferred← citeshttps://doi.org/10.1093/bioinformatics/bts367openalex-snapshot

AutoBind: automatic extraction of protein–ligand-binding affinity data from biological literature

inferred← citeshttps://doi.org/10.1093/bioinformatics/btw486openalex-snapshot

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network

inferred← citeshttps://doi.org/10.1093/bioinformatics/btx060openalex-snapshot

RelExplain—integrating data and networks to explain biological processes

inferred← citeshttps://doi.org/10.1093/bioinformatics/bty152openalex-snapshot

Exploiting and assessing multi-source data for supervised biomedical named entity recognition

inferred← citeshttps://doi.org/10.1093/database/baae127openalex-snapshot

Enhancing biomedical relation extraction through data-centric and preprocessing-robust ensemble learning approach

inferred← citeshttps://doi.org/10.1093/database/bas052openalex-snapshot

PPInterFinder—a mining tool for extracting causal relations on human proteins from literature

inferred← citeshttps://doi.org/10.1093/database/bau056openalex-snapshot

Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus

inferred← citeshttps://doi.org/10.1093/database/baw077openalex-snapshot

HITSZ_CDR: an end-to-end chemical and disease relation extraction system for BioCreative V

inferred← citeshttps://doi.org/10.1093/database/baw101openalex-snapshot

PIPE: a protein–protein interaction passage extraction module for BioCreative challenge

inferred← citeshttps://doi.org/10.1093/database/bay092openalex-snapshot

An end-to-end deep learning architecture for extracting protein–protein interactions affected by genetic mutations

inferred← citeshttps://doi.org/10.1093/jamia/ocab176openalex-snapshot

Distantly supervised biomedical relation extraction using piecewise attentive convolutional neural network and reinforcement learning

inferred← citeshttps://doi.org/10.1093/jamia/ocv092openalex-snapshot

Extracting relations from traditional Chinese medicine literature via heterogeneous entity networks

inferred← citeshttps://doi.org/10.1093/jamia/ocz141openalex-snapshot

Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning

inferred← citeshttps://doi.org/10.1101/2025.01.22.634367openalex-snapshot

Text Mining miRNA-gene Interactions for the mx-plore Platform

inferred← citeshttps://doi.org/10.1101/654475openalex-snapshot

PPPred: Classifying Protein-phenotype Co-mentions Extracted from Biomedical Literature

inferred← citeshttps://doi.org/10.1101/730085openalex-snapshot

Expanding a Database-derived Biomedical Knowledge Graph via Multi-relation Extraction from Biomedical Abstracts

inferred← citeshttps://doi.org/10.1109/access.2019.2927253openalex-snapshot

Deep Residual Convolutional Neural Network for Protein-Protein Interaction Extraction

inferred← citeshttps://doi.org/10.1109/access.2020.3014862openalex-snapshot

High-Precision Biomedical Relation Extraction for Reducing Human Curation Efforts in Industrial Applications

inferred← citeshttps://doi.org/10.1109/access.2023.3339552openalex-snapshot

Semi-Supervised Bootstrapped Syntax-Semantics-Based Approach for Agriculture Relation Extraction for Knowledge Graph Creation and Reasoning

inferred← citeshttps://doi.org/10.1109/artcom.2010.110openalex-snapshot

Exploring Text Semantics to Extract Key-Fragments for Model Answers

inferred← citeshttps://doi.org/10.1109/ase.2015.12openalex-snapshot

Development Emails Content Analyzer: Intention Mining in Developer Discussions (T)

inferred← citeshttps://doi.org/10.1109/bhi.2016.7455931openalex-snapshot

Toward patient-tailored summarization of lung cancer literature

inferred← citeshttps://doi.org/10.1109/bibe.2011.33openalex-snapshot

Evolutional Dependency Parse Trees for Biological Relation Extraction

inferred← citeshttps://doi.org/10.1109/bibe.2017.00-58openalex-snapshot

Protein-Protein Interaction Extraction from Text by Selecting Linguistic Features

inferred← citeshttps://doi.org/10.1109/bibm.2014.6999188openalex-snapshot

Improving Kernel-based protein-protein interaction extraction by unsupervised word representation

inferred← citeshttps://doi.org/10.1109/bibm.2014.6999208openalex-snapshot

A general instance representation architecture for protein-protein interaction extraction

inferred← citeshttps://doi.org/10.1109/bibm.2015.7359750openalex-snapshot

A transition-based model for jointly extracting drugs, diseases and adverse drug events

inferred← citeshttps://doi.org/10.1109/bibm55620.2022.9995458openalex-snapshot

Extraction of Gene Regulatory Relation Using BioBERT

inferred← citeshttps://doi.org/10.1109/bibmw.2011.6112438openalex-snapshot

An initial study of full parsing of clinical text using the Stanford Parser

inferred← citeshttps://doi.org/10.1109/bigdata55660.2022.10021099openalex-snapshot

Extracting Protein-Protein Interactions (PPIs) from Biomedical Literature using Attention-based Relational Context Information

inferred← citeshttps://doi.org/10.1109/bigdia53151.2021.9619716openalex-snapshot

Overview of Chinese electronic medical records Information Extraction

inferred← citeshttps://doi.org/10.1109/c2spca.2013.6749408openalex-snapshot

Semantics preserved concept based mining model

inferred← citeshttps://doi.org/10.1109/cbms.2012.6266367openalex-snapshot

Sequential pattern mining to discover relations between genes and rare diseases

inferred← citeshttps://doi.org/10.1109/ccai61966.2024.10603220openalex-snapshot

A Novel Technique for Extracting Entity Relations

inferred← citeshttps://doi.org/10.1109/cicn59264.2023.10402260openalex-snapshot

Extracting Course Text Entity Relationships Based on Improved Bert BiGRU Ratt Model

inferred← citeshttps://doi.org/10.1109/cifer.2014.6924053openalex-snapshot

From text to bank interrelation maps

inferred← citeshttps://doi.org/10.1109/cnsc.2014.6906675openalex-snapshot

Extraction of incremental information using query evaluator

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