On the public citation graph
RNA-Seq gene expression estimation with read mapping uncertainty
0 signed · 1227 inferred · view as graph
Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.
Is this your work? Sign in with ORCID and put your name on the
claims that are yours.
Reference health. See whether every reference in this work resolves to a
known work and none has been retracted — and get a dated CiteStamped
badge you can embed.
What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/978-3-540-87361-7_5openalex-snapshot
Exact Transcriptome Reconstruction from Short Sequence Reads
inferredcites →https://doi.org/10.1016/j.cell.2008.03.029openalex-snapshot
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
inferredcites →https://doi.org/10.1016/j.ygeno.2007.11.003openalex-snapshot
A rescue strategy for multimapping short sequence tags refines surveys of transcriptional activity by CAGE
inferredcites →https://doi.org/10.1038/nmeth.1223openalex-snapshot
Stem cell transcriptome profiling via massive-scale mRNA sequencing
inferredcites →https://doi.org/10.1038/nmeth.1226openalex-snapshot
Mapping and quantifying mammalian transcriptomes by RNA-Seq
inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot
RNA-Seq: a revolutionary tool for transcriptomics
inferredcites →https://doi.org/10.1093/bioinformatics/bth924openalex-snapshot
Statistical modeling of sequencing errors in SAGE libraries
inferredcites →https://doi.org/10.1093/bioinformatics/btn571openalex-snapshot
Cross-hybridization modeling on Affymetrix exon arrays
inferredcites →https://doi.org/10.1093/bioinformatics/btp113openalex-snapshot
Statistical inferences for isoform expression in RNA-Seq
inferredcites →https://doi.org/10.1093/nar/6.7.2601openalex-snapshot
A strategy of DNA sequencing employing computer programs
inferredcites →https://doi.org/10.1093/nar/gkn425openalex-snapshot
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
inferredcites →https://doi.org/10.1101/gr.079558.108openalex-snapshot
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
inferredcites →https://doi.org/10.1111/j.2517-6161.1977.tb01600.xopenalex-snapshot
Maximum Likelihood from Incomplete Data Via the EM Algorithm
inferredcites →https://doi.org/10.1126/science.1158441openalex-snapshot
The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing
inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
inferredcites →https://doi.org/10.2144/000112900openalex-snapshot
Profiling the HeLa S3 Transcriptome using Randomly Primed cDNA and Massively Parallel Short-Read Sequencing
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1016/j.phytochem.2020.112460zenodo-depositor-declared
Transcriptome analysis of Paris polyphylla var. yunnanensis illuminates the biosynthesis and accumulation of steroidal saponins in rhizomes and leaves
inferred← citeshttps://doi.org/10.2139/ssrn.4643388openalex-extracted
Comprehensive Analyses of M1A Regulator-Mediated Modification Patterns in Lower-Grade Glioma
inferred← citeshttps://doi.org/10.3897/mbmg.9.144935zenodo-depositor-declared
Markers or metagenomes: sequencing marine eukaryotic DNA for better biodiversity surveys
inferred← citeshttps://doi.org/10.1002/1878-0261.12319openalex-snapshot
Basal‐like breast cancer engages tumor‐supportive macrophages via secreted factors induced by extracellular S100A4
inferred← citeshttps://doi.org/10.1002/3527600906.mcb.200400023.pub2openalex-snapshot
Computational Biology
inferred← citeshttps://doi.org/10.1002/9780470744307.gat232openalex-snapshot
Next‐Generation Sequencing: A Revolutionary Tool for Toxicogenomics
inferred← citeshttps://doi.org/10.1002/9781119272182.ch11openalex-snapshot
Computational Methods for Transcript Assembly from RNA‐SEQ Reads
inferred← citeshttps://doi.org/10.1002/9781119970606.ch7openalex-snapshot
Transcriptomic Technologies and Statistical Data Analysis
inferred← citeshttps://doi.org/10.1002/adbi.202101151openalex-snapshot
Single‐Cell Sequencing to Unveil the Mystery of Embryonic Development
inferred← citeshttps://doi.org/10.1002/agj2.20649openalex-snapshot
Identification microRNAs and target genes in Tibetan hulless barley to BLS infection
inferred← citeshttps://doi.org/10.1002/bit.26290openalex-snapshot
Evaluation of two public genome references for chinese hamster ovary cells in the context of rna‐seq based gene expression analysis
inferred← citeshttps://doi.org/10.1002/cncr.29959openalex-snapshot
In‐depth characterization of the salivary adenoid cystic carcinoma transcriptome with emphasis on dominant cell type
inferred← citeshttps://doi.org/10.1002/cphy.c160003openalex-snapshot
Undiscovered Physiology of Transcript and Protein Networks
inferred← citeshttps://doi.org/10.1002/csc2.70133openalex-snapshot
Transcriptome and small RNA changes in response to coinfection with SPCSV and SPFMV during sweet potato storage root sprouting
inferred← citeshttps://doi.org/10.1002/gcc.22238openalex-snapshot
Global transcriptome and sequenome analysis of formalin‐fixed salivary epithelial–myoepithelial carcinoma specimens
inferred← citeshttps://doi.org/10.1002/gepi.22246openalex-snapshot
Modelling RNA‐Seq data with a zero‐inflated mixture Poisson linear model
inferred← citeshttps://doi.org/10.1002/ggn2.202200024openalex-snapshot
Transcriptomics for Clinical and Experimental Biology Research: Hang on a Seq
inferred← citeshttps://doi.org/10.1002/glia.24108openalex-snapshot
N‐myc downstream regulated family member 1 ( NDRG1 ) is enriched in myelinating oligodendrocytes and impacts myelin degradation in response to demyelination
inferred← citeshttps://doi.org/10.1002/hep.31324openalex-snapshot
Disulfide High‐Mobility Group Box 1 Drives Ischemia‐Reperfusion Injury in Human Liver Transplantation
inferred← citeshttps://doi.org/10.1002/j.2040-4603.2016.tb00730.xopenalex-snapshot
Undiscovered Physiology of Transcript and Protein Networks
inferred← citeshttps://doi.org/10.1002/jcb.28201openalex-snapshot
Construction and analysis of dysregulated lncRNA‐associated ceRNA network in colorectal cancer
inferred← citeshttps://doi.org/10.1002/jcp.28994openalex-snapshot
Dysregulated N6‐methyladenosine methylation writer METTL3 contributes to the proliferation and migration of gastric cancer
inferred← citeshttps://doi.org/10.1002/jobm.201600660openalex-snapshot
Transcriptional analysis of the adaptation ofUstilago maydisduring growth under nitrogen fixation conditions
inferred← citeshttps://doi.org/10.1002/mc.22592openalex-snapshot
TGFβ signaling confers sorafenib resistance via induction of multiple RTKs in hepatocellular carcinoma cells
inferred← citeshttps://doi.org/10.1002/mgg3.1512openalex-snapshot
Screening lncRNAs with diagnostic and prognostic value for human stomach adenocarcinoma based on machine learning and mRNA‐lncRNA co‐expression network analysis
inferred← citeshttps://doi.org/10.1002/mgg3.693openalex-snapshot
Transcriptome analysis identifies metallothionein as biomarkers to predict recurrence in hepatocellular cacinoma
inferred← citeshttps://doi.org/10.1002/mnfr.70573openalex-snapshot
The Dietary Protein Source Modulates Obesity Development and Induces Distinct Plasma Lipid Profiles and Transcriptome Profiles in Liver and Adipose Tissue
inferred← citeshttps://doi.org/10.1002/pmic.201000650openalex-snapshot
Abacus: A computational tool for extracting and pre‐processing spectral count data for label‐free quantitative proteomic analysis
inferred← citeshttps://doi.org/10.1002/pmic.202100005openalex-snapshot
SWATH‐MS and MRM: Quantification of Ras‐related proteins in HIV‐1 infected and methamphetamine‐exposed human monocyte‐derived macrophages (hMDM)
inferred← citeshttps://doi.org/10.1002/pul2.12434openalex-snapshot
Transcriptome analyses reveal common immune system dysregulation in PAH patients and Kcnk3‐deficient rats
inferred← citeshttps://doi.org/10.1002/trc2.12013openalex-snapshot
A precision medicine framework using artificial intelligence for the identification and confirmation of genomic biomarkers of response to an Alzheimer's disease therapy: Analysis of the blarcamesine (ANAVEX2‐73) Phase 2a clinical study
inferred← citeshttps://doi.org/10.1002/yea.3685openalex-snapshot
Identification of uncharacterized proteins potentially localized to mitochondria (UPMs) in Saccharomyces cerevisiae using a fluorescent protein unstable in the cytoplasm
inferred← citeshttps://doi.org/10.1007/978-1-0716-0849-4_9openalex-snapshot
Statistical and Bioinformatics Analysis of Data from Bulk and Single-Cell RNA Sequencing Experiments
inferred← citeshttps://doi.org/10.1007/978-1-0716-1960-5_6openalex-snapshot
Emerging Bioinformatics Methods and Resources in Drug Toxicology
inferred← citeshttps://doi.org/10.1007/978-1-4614-0782-9_10openalex-snapshot
Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design
inferred← citeshttps://doi.org/10.1007/978-1-4939-0835-6_11openalex-snapshot
Methods to Detect Transcribed Pseudogenes: RNA-Seq Discovery Allows Learning Through Features
inferred← citeshttps://doi.org/10.1007/978-1-4939-4035-6_14openalex-snapshot
Bioinformatics Pipeline for Transcriptome Sequencing Analysis
inferred← citeshttps://doi.org/10.1007/978-1-4939-7659-1_12openalex-snapshot
Single-Cell RNA Sequencing of Glioblastoma Cells
inferred← citeshttps://doi.org/10.1007/978-1-4939-7834-2_3openalex-snapshot
A Guide for Designing and Analyzing RNA-Seq Data
inferred← citeshttps://doi.org/10.1007/978-1-4939-8561-6_1openalex-snapshot
Identifying Bacterial Strains from Sequencing Data
inferred← citeshttps://doi.org/10.1007/978-1-4939-9728-2_16openalex-snapshot
Single-Cell Transcriptome Analysis of T Cells
inferred← citeshttps://doi.org/10.1007/978-1-4939-9802-9_4openalex-snapshot
Guidelines for Bioinformatics and the Statistical Analysis of Omic Data
inferred← citeshttps://doi.org/10.1007/978-1-4939-9802-9_5openalex-snapshot
Transcriptomic Approaches for Muscle Biology and Disorders
inferred← citeshttps://doi.org/10.1007/978-1-61779-501-5_17openalex-snapshot
Massively Parallel Sequencing Technology in Pathogenic Microbes
inferred← citeshttps://doi.org/10.1007/978-1-61779-839-9_7openalex-snapshot
Detection and Quantification of Alternative Splicing Variants Using RNA-seq
inferred← citeshttps://doi.org/10.1007/978-1-62703-980-2_26openalex-snapshot
Methods to Study Splicing from High-Throughput RNA Sequencing Data
inferred← citeshttps://doi.org/10.1007/978-3-030-23400-3_4openalex-snapshot
Cluster Bean [Cyamopsis tetragonoloba (L.) Taub] Breeding
inferred← citeshttps://doi.org/10.1007/978-3-030-48555-9_3openalex-snapshot
Genomics and Bioinformatics in Biological Discovery and Pharmaceutical Development
inferred← citeshttps://doi.org/10.1007/978-3-030-80352-0_2openalex-snapshot
Modern Approaches for Transcriptome Analyses in Plants
inferred← citeshttps://doi.org/10.1007/978-3-319-07212-8_8openalex-snapshot
Mapping of Expression Quantitative Trait Loci Using RNA-seq Data
inferred← citeshttps://doi.org/10.1007/978-3-319-07953-0_17openalex-snapshot
SVEM: A Structural Variant Estimation Method Using Multi-mapped Reads on Breakpoints
inferred← citeshttps://doi.org/10.1007/978-3-319-38782-6_7openalex-snapshot
HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads
inferred← citeshttps://doi.org/10.1007/978-3-319-44332-4_4openalex-snapshot
Managing NGS Differential Expression Uncertainty with Fuzzy Sets
inferred← citeshttps://doi.org/10.1007/978-3-319-60021-5_24openalex-snapshot
Functional Genomics in Wine Yeast: DNA Arrays and Next Generation Sequencing
inferred← citeshttps://doi.org/10.1007/978-3-642-12683-3_26openalex-snapshot
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments
inferred← citeshttps://doi.org/10.1007/978-3-642-15294-8_17openalex-snapshot
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data
inferred← citeshttps://doi.org/10.1007/978-3-642-21260-4_37openalex-snapshot
Accurate Estimation of Gene Expression Levels from DGE Sequencing Data
inferred← citeshttps://doi.org/10.1007/978-3-642-23038-7_19openalex-snapshot
Maximum Likelihood Estimation of Incomplete Genomic Spectrum from HTS Data
inferred← citeshttps://doi.org/10.1007/978-3-642-29627-7_12openalex-snapshot
A Robust Method for Transcript Quantification with RNA-seq Data
inferred← citeshttps://doi.org/10.1007/978-81-322-1184-6_3openalex-snapshot
Next-Generation Sequencing (NGS): A Revolutionary Technology in Pharmacogenomics and Personalized Medicine
inferred← citeshttps://doi.org/10.1007/978-94-017-7450-5_1openalex-snapshot
The Analyses of Global Gene Expression and Transcription Factor Regulation
inferred← citeshttps://doi.org/10.1007/978-981-16-4866-3_19openalex-snapshot
Omics Data Analysis Tools for Biomarker Discovery and the Tutorial
inferred← citeshttps://doi.org/10.1007/978-981-95-5183-5_2openalex-snapshot
RNA Sequencing Platforms and Bioinformatics Tools
inferred← citeshttps://doi.org/10.1007/s00011-022-01571-5openalex-snapshot
Bioinformatics analysis for identifying micro-RNAs, long noncoding RNAs, transcription factors, and immune genes regulatory networks in diabetic cardiomyopathy using an integrated bioinformatics analysis
inferred← citeshttps://doi.org/10.1007/s00122-025-04820-3openalex-snapshot
Genetic dissection of foxtail millet bristles using combined QTL mapping and RNA-seq
inferred← citeshttps://doi.org/10.1007/s00240-024-01534-xopenalex-snapshot
Deficient butyrate metabolism in the intestinal microbiome is a potential risk factor for recurrent kidney stone disease
inferred← citeshttps://doi.org/10.1007/s00253-022-12182-9openalex-snapshot
Identification of polyketide synthase genes required for aspinolide biosynthesis in Trichoderma arundinaceum
inferred← citeshttps://doi.org/10.1007/s00284-025-04680-6openalex-snapshot
Characterization and Genomic Analysis of the First Phage Infecting Vibrio hyugaensis, vB_VhyS_SJ1
inferred← citeshttps://doi.org/10.1007/s00284-025-04694-0openalex-snapshot
Transcriptomic Analysis of the Interaction Between Sake Yeast and Kuratsuki Bacillus in Co-Culture
inferred← citeshttps://doi.org/10.1007/s00300-017-2228-7openalex-snapshot
Examination of gene repertoires and physiological responses to iron and light limitation in Southern Ocean diatoms
inferred← citeshttps://doi.org/10.1007/s00343-020-0241-0openalex-snapshot
Positive selection analysis reveals the deep-sea adaptation of a hadal sea cucumber (Paelopatides sp.) to the Mariana Trench
inferred← citeshttps://doi.org/10.1007/s00414-019-02127-9openalex-snapshot
Whole genome and transcriptome sequencing of post-mortem cardiac tissues from sudden cardiac death victims identifies a gene regulatory variant in NEXN
inferred← citeshttps://doi.org/10.1007/s00418-022-02122-zopenalex-snapshot
Enhanced oxidative phosphorylation of IgG plasma cells can contribute to hypoxia in the mucosa of active ulcerative colitis
inferred← citeshttps://doi.org/10.1007/s00425-018-2983-xopenalex-snapshot
Circular RNA architecture and differentiation during leaf bud to young leaf development in tea (Camellia sinensis)
inferred← citeshttps://doi.org/10.1007/s00705-021-05087-xopenalex-snapshot
Complete genome sequence analysis of a novel coguvirus isolated from Paris polyphylla var. yunnanensis
inferred← citeshttps://doi.org/10.1007/s00792-020-01214-9openalex-snapshot
A multi-omic screening approach for the discovery of thermoactive glycoside hydrolases
inferred← citeshttps://doi.org/10.1007/s10126-021-10052-5openalex-snapshot
A Novel Dop2/Invertebrate-Type Dopamine Signaling System Potentially Mediates Stress, Female Reproduction, and Early Development in the Pacific Oyster (Crassostrea gigas)
inferred← citeshttps://doi.org/10.1007/s10142-019-00720-0openalex-snapshot
Evaluation of circulating leukocyte transcriptome and its relationship with immune function and blood markers in dairy cows during the transition period
inferred← citeshttps://doi.org/10.1007/s10265-021-01338-9openalex-snapshot
Metabolome and transcriptome profiling of Theobroma cacao provides insights into the molecular basis of pod color variation
inferred← citeshttps://doi.org/10.1007/s10577-017-9561-0openalex-snapshot
The hnRNP Q-like gene is retroinserted into the B chromosomes of the cichlid fish Astatotilapia latifasciata
inferred← citeshttps://doi.org/10.1007/s10725-018-0444-yopenalex-snapshot
Transcriptome profiles reveal new regulatory factors of anthocyanin accumulation in a novel purple-colored cherry tomato cultivar Jinling Moyu
inferred← citeshttps://doi.org/10.1007/s10867-021-09581-wopenalex-snapshot
Analysis of the effects of magnetic levitation to simulate microgravity environment on the Arp2/3 complex pathway in macrophage
inferred← citeshttps://doi.org/10.1007/s11033-014-3513-yopenalex-snapshot
Comparative transcriptomic analysis to identify differentially expressed genes in fat tissue of adult Berkshire and Jeju Native Pig using RNA-seq
inferred← citeshttps://doi.org/10.1007/s11060-019-03372-zopenalex-snapshot
Identification and validation of a 21-mRNA prognostic signature in diffuse lower-grade gliomas
inferred← citeshttps://doi.org/10.1007/s11103-011-9811-zopenalex-snapshot
RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis
inferred← citeshttps://doi.org/10.1007/s11103-014-0179-8openalex-snapshot
Characterization of mango (Mangifera indica L.) transcriptome and chloroplast genome
inferred← citeshttps://doi.org/10.1007/s11103-025-01592-8openalex-snapshot
Transcriptomic analysis of wrinkled leaf development of Tai-cai (Brassica rapa var. tai-tsai) and its synthetic allotetraploid via RNA and miRNA sequencing
inferred← citeshttps://doi.org/10.1007/s11105-025-01650-xopenalex-snapshot
A Comparative Transcriptome Analysis Reveals the Genes Associated with Differential Volatile Compound Contents in the Fruit of Prunus mume Cultivars
inferred← citeshttps://doi.org/10.1007/s11255-019-02096-3openalex-snapshot
SAMD5 mRNA was overexpressed in prostate cancer and can predict biochemical recurrence after radical prostatectomy
inferred← citeshttps://doi.org/10.1007/s11262-025-02182-yopenalex-snapshot
RNA-viromics unveils diverse RNA viral communities in Large-billed crows and Northern Ravens
inferred← citeshttps://doi.org/10.1007/s11427-011-4255-xopenalex-snapshot
Overview of available methods for diverse RNA-Seq data analyses
inferred← citeshttps://doi.org/10.1007/s11523-016-0431-zopenalex-snapshot
Evaluation of FGFR3 as a Therapeutic Target in Head and Neck Squamous Cell Carcinoma
inferred← citeshttps://doi.org/10.1007/s11626-017-0198-2openalex-snapshot
Identification of key genes fluctuated induced by avian leukemia virus (ALV-J) infection in chicken cells
inferred← citeshttps://doi.org/10.1007/s11704-022-2011-yopenalex-snapshot
AE-TPGG: a novel autoencoder-based approach for single-cell RNA-seq data imputation and dimensionality reduction
inferred← citeshttps://doi.org/10.1007/s11802-027-6632-5openalex-snapshot
Genomic Characterization of vB_PaeP_P39, a Mitomycin C-Induced Temperate Phage of Pseudomonas aeruginosa Representing a Putative Viral Family Within Caudoviricetes
inferred← citeshttps://doi.org/10.1007/s12064-013-0178-3openalex-snapshot
A model based criterion for gene expression calls using RNA-seq data
inferred← citeshttps://doi.org/10.1007/s12094-018-02029-zopenalex-snapshot
Identification a novel set of 6 differential expressed genes in prostate cancer that can potentially predict biochemical recurrence after curative surgery
inferred← citeshttps://doi.org/10.1007/s12253-017-0341-0openalex-snapshot
Clinical Implications of NRAS Overexpression in Resectable Pancreatic Adenocarcinoma Patients
inferred← citeshttps://doi.org/10.1007/s12275-016-6233-2openalex-snapshot
On the study of microbial transcriptomes using second- and third-generation sequencing technologies
inferred← citeshttps://doi.org/10.1007/s12275-020-9536-2openalex-snapshot
STATR: A simple analysis pipeline of Ribo-Seq in bacteria
inferred← citeshttps://doi.org/10.1007/s12561-011-9052-3openalex-snapshot
A Hierarchical Bayesian Model for Estimating and Inferring Differential Isoform Expression for Multi-sample RNA-Seq Data
inferred← citeshttps://doi.org/10.1007/s12561-012-9064-7openalex-snapshot
Statistical and Computational Methods for High-Throughput Sequencing Data Analysis of Alternative Splicing
inferred← citeshttps://doi.org/10.1007/s12561-012-9068-3openalex-snapshot
eQTL Mapping Using RNA-seq Data
inferred← citeshttps://doi.org/10.1007/s12561-016-9182-8openalex-snapshot
Unit-Free and Robust Detection of Differential Expression from RNA-Seq Data
inferred← citeshttps://doi.org/10.1007/s13042-016-0497-zopenalex-snapshot
PBSeq: Modeling base-level bias to estimate gene and isoform expression for RNA-seq data
inferred← citeshttps://doi.org/10.1007/s13205-024-04084-6openalex-snapshot
Identification of differentially expressed miRNAs between male sterile and fertile floral buds in watermelon (Citrullus lanatus L.) via high-throughput sequencing
inferred← citeshttps://doi.org/10.1007/s13721-020-00280-5openalex-snapshot
Identification of potential Parkinson’s disease biomarkers using computational biology approaches
inferred← citeshttps://doi.org/10.1007/s13721-025-00612-3openalex-snapshot
A comprehensive survey of gene co-expression network analysis: methods, tools, challenges, and future directions
inferred← citeshttps://doi.org/10.1007/s40484-017-0126-1openalex-snapshot
PMTDS: a computational method based on genetic interaction networks for Precision Medicine Target‐Drug Selection in cancer
inferred← citeshttps://doi.org/10.1007/s40484-020-0208-3openalex-snapshot
A censored‐Poisson model based approach to the analysis of RNA‐seq data
inferred← citeshttps://doi.org/10.1007/s42995-025-00347-0openalex-snapshot
Deciphering the sexually dimorphic endocrine regulatory network of Pacific white shrimp (Litopenaeus vannamei) after unilateral eyestalk ablation
inferred← citeshttps://doi.org/10.1016/b978-0-12-409547-2.14269-6openalex-snapshot
Nucleic Acids: RNA Identification and Quantification Via Next-Generation Sequencing
inferred← citeshttps://doi.org/10.1016/b978-0-12-801238-3.64209-5openalex-snapshot
Bioinformatics in Toxicology: Statistical Methods for Supervised Learning in High-Dimensional Omics Data
inferred← citeshttps://doi.org/10.1016/b978-0-12-809633-8.20211-2openalex-snapshot
Differential Expression From Microarray and RNA-seq Experiments
inferred← citeshttps://doi.org/10.1016/b978-0-12-820595-2.00017-5openalex-snapshot
Deciphering the animal genomics using bioinformatics approaches
inferred← citeshttps://doi.org/10.1016/b978-0-323-95488-4.10022-1openalex-snapshot
Bioinformatics in Toxicology: Statistical Methods for Supervised Learning in High-Dimensional Omics Data
inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00207-4openalex-snapshot
Next Generation Sequence Analysis
inferred← citeshttps://doi.org/10.1016/b978-0-444-62651-6.00015-5openalex-snapshot
Analysis of Deep Sequencing Data
inferred← citeshttps://doi.org/10.1016/j.actbio.2014.03.031openalex-snapshot
Evolution of the tyrosinase gene family in bivalve molluscs: Independent expansion of the mantle gene repertoire
inferred← citeshttps://doi.org/10.1016/j.agwat.2024.108675openalex-snapshot
Advantageous spike-to-stem competition for assimilates contributes to the reduction in grain number loss in wheat spikes under water deficit stress
inferred← citeshttps://doi.org/10.1016/j.ajhg.2014.01.019openalex-snapshot
An Expressed Retrogene of the Master Embryonic Stem Cell Gene POU5F1 Is Associated with Prostate Cancer Susceptibility
inferred← citeshttps://doi.org/10.1016/j.ajhg.2015.05.002openalex-snapshot
Polymorphisms in a Putative Enhancer at the 10q21.2 Breast Cancer Risk Locus Regulate NRBF2 Expression
inferred← citeshttps://doi.org/10.1016/j.ajhg.2024.03.007openalex-snapshot
The clinical utility and diagnostic implementation of human subject cell transdifferentiation followed by RNA sequencing
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2025.743464openalex-snapshot
Cardiac transcriptomic analysis of thermal stress and recovery reveals dynamic metabolic regulation in the Zhikong scallop (Chlamys farreri)
inferred← citeshttps://doi.org/10.1016/j.bbadis.2020.165956openalex-snapshot
Transcriptome analysis provides new molecular signatures in sporadic Cerebral Cavernous Malformation endothelial cells
inferred← citeshttps://doi.org/10.1016/j.bbamcr.2019.06.019openalex-snapshot
Development and epigenetic plasticity of murine Müller glia
inferred← citeshttps://doi.org/10.1016/j.canlet.2012.11.010openalex-snapshot
Opportunities and methods for studying alternative splicing in cancer with RNA-Seq
inferred← citeshttps://doi.org/10.1016/j.cbd.2015.01.006openalex-snapshot
Spatial patterns in markers of contaminant exposure, glucose and glycogen metabolism, and immunological response in juvenile winter flounder (Pseudoplueronectes americanus)
inferred← citeshttps://doi.org/10.1016/j.cbpa.2012.12.008openalex-snapshot
Transcriptomics in the RNA-seq era
inferred← citeshttps://doi.org/10.1016/j.cbpc.2021.109086openalex-snapshot
miR-217 through SIRT1 regulates the immunotoxicity of cadmium in Cyprinus carpio
inferred← citeshttps://doi.org/10.1016/j.cca.2025.120747openalex-snapshot
One‑carbon pathway gene expression analyses in blood samples of subjects with trisomy 21
inferred← citeshttps://doi.org/10.1016/j.ccell.2018.03.006openalex-snapshot
lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer
inferred← citeshttps://doi.org/10.1016/j.ccell.2022.07.006openalex-snapshot
Precise reconstruction of the TME using bulk RNA-seq and a machine learning algorithm trained on artificial transcriptomes
inferred← citeshttps://doi.org/10.1016/j.ccell.2025.07.011openalex-snapshot
Integrative analysis of lung adenocarcinoma across diverse ethnicities and exposures
inferred← citeshttps://doi.org/10.1016/j.cell.2019.06.036openalex-snapshot
CAG Repeat Not Polyglutamine Length Determines Timing of Huntington’s Disease Onset
inferred← citeshttps://doi.org/10.1016/j.cell.2023.07.013openalex-snapshot
Pan-cancer analysis of post-translational modifications reveals shared patterns of protein regulation
inferred← citeshttps://doi.org/10.1016/j.cell.2024.10.030openalex-snapshot
A Zea genus-specific micropeptide controls kernel dehydration in maize
inferred← citeshttps://doi.org/10.1016/j.cell.2026.08.025openalex-snapshot
scBaseCount: An AI agent-curated, standardized, auto-updated single-cell data repository
inferred← citeshttps://doi.org/10.1016/j.celrep.2012.08.002openalex-snapshot
Identification of the Hemogenic Endothelial Progenitor and Its Direct Precursor in Human Pluripotent Stem Cell Differentiation Cultures
inferred← citeshttps://doi.org/10.1016/j.celrep.2014.12.052openalex-snapshot
Ancient Transposable Elements Transformed the Uterine Regulatory Landscape and Transcriptome during the Evolution of Mammalian Pregnancy
inferred← citeshttps://doi.org/10.1016/j.celrep.2018.08.093openalex-snapshot
Endogenous rRNA Sequence Variation Can Regulate Stress Response Gene Expression and Phenotype
inferred← citeshttps://doi.org/10.1016/j.celrep.2019.01.041openalex-snapshot
RNA-Seq Signatures Normalized by mRNA Abundance Allow Absolute Deconvolution of Human Immune Cell Types
inferred← citeshttps://doi.org/10.1016/j.celrep.2024.114107openalex-snapshot
Physical and functional interaction among Irf8 enhancers during dendritic cell differentiation
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115661openalex-snapshot
The m C methyltransferase NSUN2 promotes progression of acute myeloid leukemia by regulating serine metabolism
inferred← citeshttps://doi.org/10.1016/j.cels.2016.10.012openalex-snapshot
Modeling Enzyme Processivity Reveals that RNA-Seq Libraries Are Biased in Characteristic and Correctable Ways
inferred← citeshttps://doi.org/10.1016/j.cels.2017.04.007openalex-snapshot
PROBer Provides a General Toolkit for Analyzing Sequencing-Based Toeprinting Assays
inferred← citeshttps://doi.org/10.1016/j.cels.2019.10.005openalex-snapshot
Detecting, Categorizing, and Correcting Coverage Anomalies of RNA-Seq Quantification
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2022.105684openalex-snapshot
Integrated COVID-19 Predictor: Differential expression analysis to reveal potential biomarkers and prediction of coronavirus using RNA-Seq profile data
inferred← citeshttps://doi.org/10.1016/j.csbj.2014.09.004openalex-snapshot
RNA-Seq Data: A Complexity Journey
inferred← citeshttps://doi.org/10.1016/j.csbj.2020.06.014openalex-snapshot
Handling multi-mapped reads in RNA-seq
inferred← citeshttps://doi.org/10.1016/j.csbj.2022.09.003openalex-snapshot
Association of glioma CD44 expression with glial dynamics in the tumour microenvironment and patient prognosis
inferred← citeshttps://doi.org/10.1016/j.cub.2019.04.029openalex-snapshot
Three Genes Define a Bacterial-Like Arsenic Tolerance Mechanism in the Arsenic Hyperaccumulating Fern Pteris vittata
inferred← citeshttps://doi.org/10.1016/j.cub.2020.10.004openalex-snapshot
Ancestral Role of Ecdysis-Related Neuropeptides in Animal Life Cycle Transitions
inferred← citeshttps://doi.org/10.1016/j.cub.2024.11.022openalex-snapshot
Tubulin sequence divergence is associated with the use of distinct microtubule regulators
inferred← citeshttps://doi.org/10.1016/j.dci.2024.105165openalex-snapshot
Transcriptome profiling of lumpfish (Cyclopterus lumpus) head kidney to Renibacterium salmoninarum at early and chronic infection stages
inferred← citeshttps://doi.org/10.1016/j.dci.2026.105700openalex-snapshot
Innate immune response of lumpfish (Cyclopterus lumpus) to oil-based and water-soluble adjuvants
inferred← citeshttps://doi.org/10.1016/j.dib.2024.111106openalex-snapshot
A replicated, whole-insect transcriptomic dataset for Nezara viridula (southern green stink bug) spanning developmental stadia and sexes
inferred← citeshttps://doi.org/10.1016/j.dib.2026.112532openalex-snapshot
A transcriptome sequence dataset characterizing eggs, nymphs and adults of Oxycarenus hyalinipennis, the cotton seed bug
inferred← citeshttps://doi.org/10.1016/j.ebiom.2018.11.053openalex-snapshot
Mapping of γ/δ T cells Reveals Vδ2 T cells Resistance to Senescence
inferred← citeshttps://doi.org/10.1016/j.ebiom.2023.104719openalex-snapshot
Machine learning identifies signatures of macrophage reactivity and tolerance that predict disease outcomes
inferred← citeshttps://doi.org/10.1016/j.ejphar.2023.176184openalex-snapshot
Highly potent, orally active novel small-molecule HPK1 inhibitor DS21150768 induces anti-tumor responses in multiple syngeneic tumor mouse models
inferred← citeshttps://doi.org/10.1016/j.exer.2021.108641openalex-snapshot
N-retinylidene-N-retinylethanolamine adduct induces expression of chronic inflammation cytokines in retinal pigment epithelium cells
inferred← citeshttps://doi.org/10.1016/j.fgb.2018.08.002openalex-snapshot
Effect of deletion of a trichothecene toxin regulatory gene on the secondary metabolism transcriptome of the saprotrophic fungus Trichoderma arundinaceum
inferred← citeshttps://doi.org/10.1016/j.fsi.2025.110359openalex-snapshot
Dual-seq transcriptomics of Aeromonas salmonicida infection in Atlantic salmon (Salmo salar) primary macrophages reveals lysosome and apoptosis impairments
inferred← citeshttps://doi.org/10.1016/j.fsi.2026.111739openalex-snapshot
Microgravity induces morphological and molecular reprogramming in Atlantic Salmon (Salmo salar) kidney cell line
inferred← citeshttps://doi.org/10.1016/j.gene.2014.05.059openalex-snapshot
Transcriptome analysis of grain-filling caryopses reveals the potential formation mechanism of the rice sugary mutant
inferred← citeshttps://doi.org/10.1016/j.gene.2014.06.005openalex-snapshot
Comparative transcriptomic analysis by RNA-seq to discern differential expression of genes in liver and muscle tissues of adult Berkshire and Jeju Native Pig
inferred← citeshttps://doi.org/10.1016/j.gene.2015.02.070openalex-snapshot
Genome-wide analysis reveals the differential regulations of mRNAs and miRNAs in Dorset and Small Tail Han sheep muscles
inferred← citeshttps://doi.org/10.1016/j.gene.2016.01.047openalex-snapshot
Genome-wide transcriptome analysis in the ovaries of two goats identifies differentially expressed genes related to fecundity
inferred← citeshttps://doi.org/10.1016/j.gene.2016.09.026openalex-snapshot
Identification of genes in the hypothalamus-pituitary-gonad axis in the brain of Amur sturgeons (Acipenser schrenckii) by comparative transcriptome analysis in relation to kisspeptin treatment
inferred← citeshttps://doi.org/10.1016/j.gene.2022.146557openalex-snapshot
Genome-wide identification of small interfering RNAs from sRNA libraries constructed from soybean cyst nematode resistant and susceptible cultivars
inferred← citeshttps://doi.org/10.1016/j.gene.2024.148994openalex-snapshot
Genome‑wide identification of circular RNAs and MAPKs reveals the regulatory networks in response to green peach aphid infestation in peach (Prunus persica)
inferred← citeshttps://doi.org/10.1016/j.gim.2021.09.001openalex-snapshot
Standardized practices for RNA diagnostics using clinically accessible specimens reclassifies 75% of putative splicing variants
inferred← citeshttps://doi.org/10.1016/j.gpb.2021.08.004openalex-snapshot
Convergent Usage of Amino Acids in Human Cancers as a Reversed Process of Tissue Development
inferred← citeshttps://doi.org/10.1016/j.gpb.2022.12.002openalex-snapshot
m6A Profile Dynamics Indicates Regulation of Oyster Development by m6A-RNA Epitranscriptomes
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e27510openalex-snapshot
Comprehensive analyses of m1A regulator-mediated modification patterns determining prognosis in lower-grade glioma (running title: m1A in LGG)
inferred← citeshttps://doi.org/10.1016/j.ibmb.2020.103474openalex-snapshot
Linking omics and ecology to dissect interactions between the apple proliferation phytoplasma and its psyllid vector Cacopsylla melanoneura
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2026.154239openalex-snapshot
Identification and analysis of KRTAP5–1 as a prognostic biomarker for colorectal carcinoma
inferred← citeshttps://doi.org/10.1016/j.immuni.2026.05.016openalex-snapshot
Interleukin 23 promotes a pro-inflammatory Th17 cell state by stabilizing RORγt and suppressing glucocorticoid receptor activity
inferred← citeshttps://doi.org/10.1016/j.isci.2020.101956openalex-snapshot
Algorithms meet sequencing technologies – 10th edition of the RECOMB-Seq workshop
inferred← citeshttps://doi.org/10.1016/j.isci.2021.103439openalex-snapshot
Saline lakes on the Qinghai-Tibet Plateau harbor unique viral assemblages mediating microbial environmental adaption
inferred← citeshttps://doi.org/10.1016/j.it.2016.12.001openalex-snapshot
Single-Cell Genomics: Approaches and Utility in Immunology
inferred← citeshttps://doi.org/10.1016/j.jare.2023.02.002openalex-snapshot
Genome and haplotype provide insights into the population differentiation and breeding improvement of Gossypium barbadense
inferred← citeshttps://doi.org/10.1016/j.jbi.2015.05.019openalex-snapshot
Predicting censored survival data based on the interactions between meta-dimensional omics data in breast cancer
inferred← citeshttps://doi.org/10.1016/j.jenvman.2023.119144openalex-snapshot
Unraveling the antibiotic resistome in backwater zones of large cascade reservoirs: Co-occurrence patterns, horizontal transfer directions and health risks
inferred← citeshttps://doi.org/10.1016/j.jgg.2024.09.021openalex-snapshot
Time-course transcriptomic analysis reveals transcription factors involved in modulating nitrogen sensibility in maize
inferred← citeshttps://doi.org/10.1016/j.job.2025.100719openalex-snapshot
Solute carrier family 9 member A5 regulated by TGF-β is necessary for dental enamel formation
inferred← citeshttps://doi.org/10.1016/j.juro.2014.03.097openalex-snapshot
Prognostic Significance of Biallelic Loss of PTEN in Clear Cell Renal Cell Carcinoma
inferred← citeshttps://doi.org/10.1016/j.kint.2018.08.037openalex-snapshot
The proteome microenvironment determines the protective effect of preconditioning in cisplatin-induced acute kidney injury
inferred← citeshttps://doi.org/10.1016/j.margen.2016.11.005openalex-snapshot
De novo transcriptome assembly of the hydrocoral Millepora alcicornis (branching fire coral) from the Caribbean
inferred← citeshttps://doi.org/10.1016/j.margen.2021.100863openalex-snapshot
Description of four Millepora spp. transcriptomes and their potential to delimit the Caribbean fire coral species
inferred← citeshttps://doi.org/10.1016/j.mce.2015.10.011openalex-snapshot
Identification of a novel fusion transcript between human relaxin-1 (RLN1) and human relaxin-2 (RLN2) in prostate cancer
inferred← citeshttps://doi.org/10.1016/j.mce.2018.07.010openalex-snapshot
Transcriptomic analysis of mRNA expression and alternative splicing during mouse sex determination
inferred← citeshttps://doi.org/10.1016/j.molp.2017.12.007openalex-snapshot
Complete Pathway Elucidation and Heterologous Reconstitution of Rhodiola Salidroside Biosynthesis
inferred← citeshttps://doi.org/10.1016/j.molp.2020.06.005openalex-snapshot
MicroTom Metabolic Network: Rewiring Tomato Metabolic Regulatory Network throughout the Growth Cycle
inferred← citeshttps://doi.org/10.1016/j.molp.2022.07.003openalex-snapshot
Multi-omics analyses of 398 foxtail millet accessions reveal genomic regions associated with domestication, metabolite traits, and anti-inflammatory effects
inferred← citeshttps://doi.org/10.1016/j.neo.2017.05.002openalex-snapshot
UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses
inferred← citeshttps://doi.org/10.1016/j.neucom.2025.129708openalex-snapshot
scCDAN: Constraint domain adaptation network for cell type annotation across single cell RNA sequencing data
inferred← citeshttps://doi.org/10.1016/j.neuropharm.2022.109370openalex-snapshot
The mammalian purine salvage pathway as an exploitable route for cerebral bioenergetic support after brain injury
inferred← citeshttps://doi.org/10.1016/j.neurot.2024.e00517openalex-snapshot
Delayed atorvastatin delivery promotes recovery after experimental spinal cord injury
showing the first 200 of 1210 · page through all 1210
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.