On the public citation graph

Utopia documents: linking scholarly literature with research data

https://doi.org/10.1093/bioinformatics/btq383
0 signed · 105 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/cfg.359openalex-snapshot
UTOPIA—user‐friendly tools for operating informatics applications
inferredcites →https://doi.org/10.1002/jemt.20618openalex-snapshot
Embedding 3D models of biological specimens in PDF publications
inferredcites →https://doi.org/10.1007/978-3-540-69828-9_15openalex-snapshot
Bio2RDF : A Semantic Web Atlas of Post Genomic Knowledge about Human and Mouse
inferredcites →https://doi.org/10.1007/978-3-540-76298-0_52openalex-snapshot
DBpedia: A Nucleus for a Web of Open Data
inferredcites →https://doi.org/10.1016/j.febslet.2008.01.066openalex-snapshot
Interaction between fortilin and transforming growth factor‐beta stimulated clone‐22 (TSC‐22) prevents apoptosis via the destabilization of TSC‐22
inferredcites →https://doi.org/10.1016/j.febslet.2008.02.071openalex-snapshot
Linking entries in protein interaction database to structured text: The FEBS Letters experiment
inferredcites →https://doi.org/10.1016/j.tibs.2008.06.004openalex-snapshot
Grasping molecular structures through publication-integrated 3D models
inferredcites →https://doi.org/10.1038/438900aopenalex-snapshot
Internet encyclopaedias go head to head
inferredcites →https://doi.org/10.1038/443379bopenalex-snapshot
Statistical flaw trips up study of bad stats
inferredcites →https://doi.org/10.1038/nbt0609-508openalex-snapshot
Reflect: augmented browsing for the life scientist
inferredcites →https://doi.org/10.1038/nbt1346openalex-snapshot
The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration
inferredcites →https://doi.org/10.1038/npre.2009.3092.1openalex-snapshot
The future of annotation/biocuration
inferredcites →https://doi.org/10.1042/bj20091474openalex-snapshot
Calling International Rescue: knowledge lost in literature and data landslide!
inferredcites →https://doi.org/10.1087/095315107x243884openalex-snapshot
ALPSP/Charlesworth Awards 2007
inferredcites →https://doi.org/10.1093/nar/gkg095openalex-snapshot
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
inferredcites →https://doi.org/10.1093/nar/gki070openalex-snapshot
The Universal Protein Resource (UniProt)
inferredcites →https://doi.org/10.1093/nar/gkj120openalex-snapshot
The RCSB PDB information portal for structural genomics
inferredcites →https://doi.org/10.1093/nar/gkl950openalex-snapshot
MINT: the Molecular INTeraction database
inferredcites →https://doi.org/10.1093/nar/gkn317openalex-snapshot
BioLit: integrating biological literature with databases
inferredcites →https://doi.org/10.1093/nar/gkn664openalex-snapshot
The Universal Protein Resource (UniProt) 2009
inferredcites →https://doi.org/10.1093/nar/gkp896openalex-snapshot
KEGG for representation and analysis of molecular networks involving diseases and drugs
inferredcites →https://doi.org/10.1126/science.1157784openalex-snapshot
Strategic Reading, Ontologies, and the Future of Scientific Publishing
inferredcites →https://doi.org/10.1186/1471-2105-10-s6-s19openalex-snapshot
Visualising biological data: a semantic approach to tool and database integration
inferredcites →https://doi.org/10.1186/1471-2105-8-17openalex-snapshot
Publishing perishing? Towards tomorrow's information architecture
inferredcites →https://doi.org/10.1371/journal.pcbi.0010034openalex-snapshot
Will a Biological Database Be Different from a Biological Journal?
inferredcites →https://doi.org/10.1371/journal.pcbi.1000361openalex-snapshot
Adventures in Semantic Publishing: Exemplar Semantic Enhancements of a Research Article

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3199160openalex-extracted
inferred← citeshttps://doi.org/10.2139/ssrn.3199184openalex-extracted
inferred← citeshttps://doi.org/10.1002/9781118617151.ch38openalex-snapshot
Automated Annotation of Scientific Documents: Increasing Access to Biological Knowledge
inferred← citeshttps://doi.org/10.1002/9781119970606.ch4openalex-snapshot
Data Integration: Towards Understanding Biological Complexity
inferred← citeshttps://doi.org/10.1002/asi.23917openalex-snapshot
Theory and practice of data citation
inferred← citeshttps://doi.org/10.1002/ece3.1547openalex-snapshot
rBEF data: documenting data exchange and analysis for a collaborative data management platform
inferred← citeshttps://doi.org/10.1002/minf.201200034openalex-snapshot
Open Drug Discovery Teams: A Chemistry Mobile App for Collaboration
inferred← citeshttps://doi.org/10.1007/978-3-319-03524-6_29openalex-snapshot
Semantic Annotation of Scholarly Documents and Citations
inferred← citeshttps://doi.org/10.1007/978-3-319-04777-5_5openalex-snapshot
The Semantic Publishing and Referencing Ontologies
inferred← citeshttps://doi.org/10.1007/978-3-319-08425-1_6openalex-snapshot
Preliminary Analysis of Data Sources Interlinking
inferred← citeshttps://doi.org/10.1007/978-3-319-12024-9_10openalex-snapshot
Semantify CEUR-WS Proceedings: Towards the Automatic Generation of Highly Descriptive Scholarly Publishing Linked Datasets
inferred← citeshttps://doi.org/10.1007/978-3-319-25518-7_15openalex-snapshot
On the Automated Generation of Scholarly Publishing Linked Datasets: The Case of CEUR-WS Proceedings
inferred← citeshttps://doi.org/10.1007/978-3-319-41754-7_14openalex-snapshot
Disentangling the Structure of Tables in Scientific Literature
inferred← citeshttps://doi.org/10.1007/978-3-319-93692-5_3openalex-snapshot
Hybrid Filtering Approach for Linked Open Data Exploration Applied to a Scholar Object Linking System
inferred← citeshttps://doi.org/10.1007/978-3-642-28267-6_18openalex-snapshot
Managing Entire Lifecycles of e-Science Applications in the GridSpace2 Virtual Laboratory – From Motivation through Idea to Operable Web-Accessible Environment Built on Top of PL-Grid e-Infrastructure
inferred← citeshttps://doi.org/10.1007/978-3-642-34222-6_16openalex-snapshot
SOLE: Linking Research Papers with Science Objects
inferred← citeshttps://doi.org/10.1007/s00799-013-0106-7openalex-snapshot
A vision towards Scientific Communication Infrastructures
inferred← citeshttps://doi.org/10.1007/s10708-011-9431-9openalex-snapshot
Making journal articles ‘live’: turning academic writing into scientific dialog
inferred← citeshttps://doi.org/10.1007/s10758-025-09846-6openalex-snapshot
Conceptual Map as a Tool for Evaluation in Complexity Science: Usage and Limitations
inferred← citeshttps://doi.org/10.1007/s11306-013-0564-3openalex-snapshot
An analysis of a ‘community-driven’ reconstruction of the human metabolic network
inferred← citeshttps://doi.org/10.1016/b978-1-84334-709-5.50018-1openalex-snapshot
References
inferred← citeshttps://doi.org/10.1016/j.biotechadv.2014.12.012openalex-snapshot
Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications
inferred← citeshttps://doi.org/10.1016/j.drudis.2013.07.014openalex-snapshot
Metabolomics and systems pharmacology: why and how to model the human metabolic network for drug discovery
inferred← citeshttps://doi.org/10.1016/j.ecolind.2015.01.003openalex-snapshot
Digital repository of associations between environmental variables: A new resource to facilitate knowledge synthesis
inferred← citeshttps://doi.org/10.1016/j.eswa.2026.133839openalex-snapshot
The DocLap integrated system for understanding multi-page scholarly documents
inferred← citeshttps://doi.org/10.1016/j.procs.2011.04.064openalex-snapshot
The Collage Authoring Environment
inferred← citeshttps://doi.org/10.1016/j.websem.2014.07.009openalex-snapshot
Theophrastus: On demand and real-time automatic annotation and exploration of (web) documents using open linked data
inferred← citeshttps://doi.org/10.1016/j.websem.2015.01.003openalex-snapshot
Using a suite of ontologies for preserving workflow-centric research objects
inferred← citeshttps://doi.org/10.1016/j.websem.2023.100797openalex-snapshot
SemanticHadith: An ontology-driven knowledge graph for the hadith corpus
inferred← citeshttps://doi.org/10.1017/cbo9780511989421.011openalex-snapshot
Additional knowledge-based analysis approaches
inferred← citeshttps://doi.org/10.1021/acs.chemrev.6b00851openalex-snapshot
Information Retrieval and Text Mining Technologies for Chemistry
inferred← citeshttps://doi.org/10.1038/nrg3337openalex-snapshot
Text-mining solutions for biomedical research: enabling integrative biology
inferred← citeshttps://doi.org/10.1039/d5tb01901jopenalex-snapshot
CD44 and mitochondria dual-targeted polydopamine nanoplatform for combined chemotherapy, photothermal ablation, and immunogenic cell death induction in liver cancer
inferred← citeshttps://doi.org/10.1093/bib/bbs054openalex-snapshot
Classification of metagenomic sequences: methods and challenges
inferred← citeshttps://doi.org/10.1093/nar/gkq1009openalex-snapshot
GPCRDB: information system for G protein-coupled receptors
inferred← citeshttps://doi.org/10.1093/nar/gkr960openalex-snapshot
NucleaRDB: information system for nuclear receptors
inferred← citeshttps://doi.org/10.1093/nar/gkv1178openalex-snapshot
GPCRdb: an information system for G protein-coupled receptors
inferred← citeshttps://doi.org/10.1108/ajim-01-2019-0019openalex-snapshot
Data-driven decision making in graduate students’ research topic selection
inferred← citeshttps://doi.org/10.1108/jd-12-2013-0166openalex-snapshot
Setting our bibliographic references free: towards open citation data
inferred← citeshttps://doi.org/10.1109/map.2014.6821774openalex-snapshot
Effective search and exploitation of electromagnetic knowledge in the web [EM programmer's notebook]
inferred← citeshttps://doi.org/10.1109/tvcg.2023.3241596openalex-snapshot
A Qualitative Interview Study of Distributed Tracing Visualisation: A Characterisation of Challenges and Opportunities
inferred← citeshttps://doi.org/10.1111/hequ.12259openalex-snapshot
A conducive environment? The role of need support in the higher education workplace and its effect on academics' experiences of research assessment in the UK
inferred← citeshttps://doi.org/10.1142/s0218213015400126openalex-snapshot
Exploiting Linked Data for Open and Configurable Named Entity Extraction
inferred← citeshttps://doi.org/10.1145/2494266.2494271openalex-snapshot
PDFX
inferred← citeshttps://doi.org/10.1145/2494266.2494319openalex-snapshot
Recognising document components in XML-based academic articles
inferred← citeshttps://doi.org/10.1145/2814864.2814887openalex-snapshot
Crowdsourced semantic annotation of scientific publications and tabular data in PDF
inferred← citeshttps://doi.org/10.1145/3209280.3229116openalex-snapshot
QuQn map
inferred← citeshttps://doi.org/10.1145/3313831.3376559openalex-snapshot
Chameleon: Bringing Interactivity to Static Digital Documents
inferred← citeshttps://doi.org/10.1145/3702976openalex-snapshot
Non-Linear Software Documentation with Interactive Code Examples
inferred← citeshttps://doi.org/10.1186/1471-2105-12-175openalex-snapshot
Toward an interactive article: integrating journals and biological databases
inferred← citeshttps://doi.org/10.1186/1471-2105-12-351openalex-snapshot
Knowledge engineering tools for reasoning with scientific observations and interpretations: a neural connectivity use case
inferred← citeshttps://doi.org/10.1186/1471-2105-12-362openalex-snapshot
Integrating GPCR-specific information with full text articles
inferred← citeshttps://doi.org/10.1186/1471-2105-12-s8-s4openalex-snapshot
BioCreative III interactive task: an overview
inferred← citeshttps://doi.org/10.1186/1741-7015-9-17openalex-snapshot
Effectively incorporating selected multimedia content into medical publications
inferred← citeshttps://doi.org/10.1186/1751-0473-7-7openalex-snapshot
Layout-aware text extraction from full-text PDF of scientific articles
inferred← citeshttps://doi.org/10.1186/2041-1480-3-s1-s1openalex-snapshot
Open semantic annotation of scientific publications using DOMEO
inferred← citeshttps://doi.org/10.1186/2041-1480-5-28openalex-snapshot
Micropublications: a semantic model for claims, evidence, arguments and annotations in biomedical communications
inferred← citeshttps://doi.org/10.1186/s13321-015-0057-7openalex-snapshot
Machines first, humans second: on the importance of algorithmic interpretation of open chemistry data
inferred← citeshttps://doi.org/10.1186/s40709-015-0032-5openalex-snapshot
Data integration in biological research: an overview
inferred← citeshttps://doi.org/10.12688/wellcomeopenres.10210.2openalex-snapshot
SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data
inferred← citeshttps://doi.org/10.14806/ej.17.b.270openalex-snapshot
Linking research data with scholarly publications
inferred← citeshttps://doi.org/10.14806/ej.17.b.300openalex-snapshot
EMBnet.journal 17 Suppl. B
inferred← citeshttps://doi.org/10.1515/9783110522334-037openalex-snapshot
The Opening Scholarly Communication in Social Sciences project OSCOSS
inferred← citeshttps://doi.org/10.1533/9781908818249.351openalex-snapshot
Utopia Documents: transforming how industrial scientists interact with the scientific literature
inferred← citeshttps://doi.org/10.1629/2048-7754.25.3.235openalex-snapshot
Green or gold? Open access after Finch
inferred← citeshttps://doi.org/10.18352/lq.8445openalex-snapshot
Enhanced Publications: Data Models and Information Systems
inferred← citeshttps://doi.org/10.2147/oab.s15581openalex-snapshot
In silico identification and characterization of novel drug targets and outer membrane proteins in the fish pathogen Edwardsiella tarda
inferred← citeshttps://doi.org/10.2174/1574893613666181114095736openalex-snapshot
Proteome Mining for the Identification of Putative Drug Targets For Human Pathogen Clostridium Tetani
inferred← citeshttps://doi.org/10.2481/dsj.14-030openalex-snapshot
Variables As Currency: Linking Meta-Analysis Research and Data Paths in Sciences
inferred← citeshttps://doi.org/10.31237/osf.io/mcdrnopenalex-snapshot
Publishing Reproducible Geoscientific Papers: Status quo, benefits, and opportunities
inferred← citeshttps://doi.org/10.3233/ds-170010openalex-snapshot
Genuine semantic publishing
inferred← citeshttps://doi.org/10.3233/sw-150177openalex-snapshot
The Document Components Ontology (DoCO)
inferred← citeshttps://doi.org/10.3233/sw-2012-0088openalex-snapshot
Applying linked data approaches to pharmacology: Architectural decisions and implementation
inferred← citeshttps://doi.org/10.4000/rfsic.4738openalex-snapshot
Écrilecture : la littératie informationnelle à la croisée de l’offre et des services des intermédiaires
inferred← citeshttps://doi.org/10.5281/zenodo.33715openalex-snapshot
Efforts towards accessible and reliable bioinformatics
inferred← citeshttps://doi.org/10.59350/b9b51-afy39openalex-snapshot
How to export, delete and move your Mendeley account and library #mendelete
inferred← citeshttps://doi.org/10.7287/peerj.524v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Fast and accurate semantic annotation of bioassays exploiting a hybrid of machine learning and user confirmation (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.524v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Fast and accurate semantic annotation of bioassays exploiting a hybrid of machine learning and user confirmation (v0.1)"
inferred← citeshttps://doi.org/10.7717/peerj.524openalex-snapshot
Fast and accurate semantic annotation of bioassays exploiting a hybrid of machine learning and user confirmation
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.