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https://doi.org/10.1093/bioinformatics/btu426
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/jcc.20084openalex-snapshot
UCSF Chimera—A visualization system for exploratory research and analysis
inferredcites →https://doi.org/10.1016/0263-7855(96)00018-5openalex-snapshot
VMD: Visual molecular dynamics
inferredcites →https://doi.org/10.1016/s1359-6446(04)03363-xopenalex-snapshot
The case for open-source software in drug discovery
inferredcites →https://doi.org/10.1038/scientificamerican0666-42openalex-snapshot
Molecular Model-Building by Computer
inferredcites →https://doi.org/10.1109/tvcg.2006.115openalex-snapshot
Ambient Occlusion and Edge Cueing for Enhancing Real Time Molecular Visualization

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1002/pro.4899openalex-snapshot
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MHC2AffyPred : A machine‐learning approach to estimate affinity of MHC class II peptides based on structural interaction fingerprints
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inferred← citeshttps://doi.org/10.1002/slct.202501603openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/slct.73117openalex-snapshot
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inferred← citeshttps://doi.org/10.1002/wrna.1473openalex-snapshot
Translation initiation by cap‐dependent ribosome recruitment: Recent insights and open questions
inferred← citeshttps://doi.org/10.1007/10_2021_183openalex-snapshot
Human–Device Interaction in the Life Science Laboratory
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Site-Specific Incorporation of Non-canonical Amino Acids by Amber Stop Codon Suppression in Escherichia coli
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Solution X-Ray Scattering for Membrane Proteins
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Computational Modeling of DYRK1A Inhibitors as Potential Anti-Alzheimer Agents
inferred← citeshttps://doi.org/10.1007/978-1-4939-6737-7_6openalex-snapshot
Determination of Structure and Micellar Interactions of Small Antimicrobial Peptides by Solution-State NMR
inferred← citeshttps://doi.org/10.1007/978-1-4939-7366-8_4openalex-snapshot
YASARA: A Tool to Obtain Structural Guidance in Biocatalytic Investigations
inferred← citeshttps://doi.org/10.1007/978-1-4939-9446-5_12openalex-snapshot
In Silico Approaches for TRP Channel Modulation
inferred← citeshttps://doi.org/10.1007/978-3-030-02634-9_4openalex-snapshot
Biological 3D Structural Databases
inferred← citeshttps://doi.org/10.1007/978-3-030-36592-9_21openalex-snapshot
High-Performance Hybrid Computing for Bioinformatic Analysis of Protein Superfamilies
inferred← citeshttps://doi.org/10.1007/978-3-030-57456-7_18openalex-snapshot
Molecular Dynamics Simulations and in silico Analysis of Supramolecular Self-assembled Structures
inferred← citeshttps://doi.org/10.1007/978-3-031-52385-4_26openalex-snapshot
In-Silico Analysis of the High-Risk Missense Variants in PTH1R Gene and Association with Primary Failure of Tooth Eruption (PFE)
inferred← citeshttps://doi.org/10.1007/978-3-031-56496-3_5openalex-snapshot
Studies of the Interaction Dynamics in Albumin–Chondroitin Sulfate Systems by Recurrence Method
inferred← citeshttps://doi.org/10.1007/978-3-032-09101-7_37openalex-snapshot
Investigations of the Interactions of Glu-Glu-Arg, Glu-Pro-Arg and Pro-Arg-Pro Tripeptides That Have Anti-Cancer Properties with Human Serum Albumin by Molecular Docking Studies
inferred← citeshttps://doi.org/10.1007/978-3-319-32695-5_11openalex-snapshot
A New Flexible Protocol for Docking Studies
inferred← citeshttps://doi.org/10.1007/978-3-319-62027-5_8openalex-snapshot
Molecular Dynamics and Morphing Protocols for High Accuracy Molecular Docking
inferred← citeshttps://doi.org/10.1007/978-3-319-75474-1_4openalex-snapshot
Priming Time: How Cellular Proteases Arm Coronavirus Spike Proteins
inferred← citeshttps://doi.org/10.1007/978-3-319-78658-2_4openalex-snapshot
Fragment Based Molecular Dynamics for Drug Design
inferred← citeshttps://doi.org/10.1007/978-94-024-1069-3_7openalex-snapshot
Prediction of Protein Aggregation and Amyloid Formation
inferred← citeshttps://doi.org/10.1007/978-981-15-6275-4_32openalex-snapshot
Bioinformatics in Plant Pathology
inferred← citeshttps://doi.org/10.1007/s00203-026-04797-7openalex-snapshot
Computational examination of magainin-I-KL mediated disruption of E. coli biofilms via CsgA amyloid interference
inferred← citeshttps://doi.org/10.1007/s00204-022-03434-8openalex-snapshot
In silico analysis decodes transthyretin (TTR) binding and thyroid disrupting effects of per- and polyfluoroalkyl substances (PFAS)
inferred← citeshttps://doi.org/10.1007/s00216-017-0735-6openalex-snapshot
Study on oligomerization of glutamate decarboxylase from Lactobacillus brevis using asymmetrical flow field-flow fractionation (AF4) with light scattering techniques
inferred← citeshttps://doi.org/10.1007/s00232-025-00363-2openalex-snapshot
Predicting Toxicity of Insect Venom-Derived Antimicrobial Peptides Using MD Simulations: A Comparative Study of Multi-Component and Realistic Mammalian Membrane Models
inferred← citeshttps://doi.org/10.1007/s00239-024-10219-3openalex-snapshot
Structural Insights into Cold-Active Lipase from Glaciozyma antarctica PI12: Alphafold2 Prediction and Molecular Dynamics Simulation
inferred← citeshttps://doi.org/10.1007/s00249-021-01557-xopenalex-snapshot
The importance of hydrophobic interactions in the structure of transcription systems
inferred← citeshttps://doi.org/10.1007/s00253-017-8309-2openalex-snapshot
Identification, expression and characterization of an R-ω-transaminase from Capronia semiimmersa
inferred← citeshttps://doi.org/10.1007/s00253-017-8393-3openalex-snapshot
Metagenome-derived haloalkane dehalogenases with novel catalytic properties
inferred← citeshttps://doi.org/10.1007/s00253-018-8823-xopenalex-snapshot
Xylo- and arabinoxylooligosaccharides from wheat bran by endoxylanases, utilisation by probiotic bacteria, and structural studies of the enzymes
inferred← citeshttps://doi.org/10.1007/s00253-018-9068-4openalex-snapshot
Phage display-derived antibody fragments against conserved regions of VacA toxin of Helicobacter pylori
inferred← citeshttps://doi.org/10.1007/s00253-018-9328-3openalex-snapshot
A hydroquinone-specific screening system for directed P450 evolution
inferred← citeshttps://doi.org/10.1007/s00253-019-09674-6openalex-snapshot
Selection of a fully human single domain antibody specific to Helicobacter pylori urease
inferred← citeshttps://doi.org/10.1007/s00253-020-10760-3openalex-snapshot
Catalytically-active inclusion bodies for biotechnology—general concepts, optimization, and application
inferred← citeshttps://doi.org/10.1007/s00277-019-03691-1openalex-snapshot
In silico and in vitro evaluation of the impact of mutations in non-severe haemophilia A patients on assay discrepancies
inferred← citeshttps://doi.org/10.1007/s00344-025-11714-7openalex-snapshot
Distinct N6-Substituted Adenosine Derivatives Exhibit Receptor-Specific Anticytokinin Action by Unknown Non-competitive Mechanism
inferred← citeshttps://doi.org/10.1007/s00401-019-01976-3openalex-snapshot
Loss of DPP6 in neurodegenerative dementia: a genetic player in the dysfunction of neuronal excitability
inferred← citeshttps://doi.org/10.1007/s00425-020-03516-wopenalex-snapshot
Dehydroquinate dehydratase/shikimate dehydrogenases involved in gallate biosynthesis of the aluminum-tolerant tree species Eucalyptus camaldulensis
inferred← citeshttps://doi.org/10.1007/s00436-017-5417-yopenalex-snapshot
Myosin B of Plasmodium falciparum (PfMyoB): in silico prediction of its three-dimensional structure and its possible interaction with MTIP
inferred← citeshttps://doi.org/10.1007/s00449-022-02790-0openalex-snapshot
Simultaneously improving the specific activity and thermostability of α-amylase BLA by rational design
inferred← citeshttps://doi.org/10.1007/s00705-023-05726-5openalex-snapshot
Unravelling the epidemiological diversity of Zika virus by analyzing key protein variations
inferred← citeshttps://doi.org/10.1007/s00726-016-2376-zopenalex-snapshot
Collapsin response mediator protein 2: high-resolution crystal structure sheds light on small-molecule binding, post-translational modifications, and conformational flexibility
inferred← citeshttps://doi.org/10.1007/s00726-021-02947-3openalex-snapshot
d-Amino acid substituted peptides as potential alternatives of homochiral l-configurations
inferred← citeshttps://doi.org/10.1007/s00775-018-1616-yopenalex-snapshot
Structure and dynamics of Helicobacter pylori nickel-chaperone HypA: an integrated approach using NMR spectroscopy, functional assays and computational tools
inferred← citeshttps://doi.org/10.1007/s00775-026-02176-7openalex-snapshot
Spectroscopic evaluation of the interaction of myoglobin with biomedically relevant compounds
inferred← citeshttps://doi.org/10.1007/s00894-020-04459-5openalex-snapshot
Molecular basis of the beta-lactamase protein using comparative modelling, drug screening and molecular dynamics studies to understand the resistance of β-lactam antibiotics
inferred← citeshttps://doi.org/10.1007/s00894-020-04652-6openalex-snapshot
Unravelling the molecular effect of ocellatin-1, F1, K1 and S1, the frog-skin antimicrobial peptides to enhance its therapeutics—quantum and molecular mechanical approaches
inferred← citeshttps://doi.org/10.1007/s00894-020-4350-7openalex-snapshot
Characterization of the inhibition mechanism of a tissuefactor inhibiting single-chain variable fragment: a combined computational approach
inferred← citeshttps://doi.org/10.1007/s00894-021-04750-zopenalex-snapshot
Analysis of natural compounds against the activity of SARS-CoV-2 NSP15 protein towards an effective treatment against COVID-19: a theoretical and computational biology approach
inferred← citeshttps://doi.org/10.1007/s00894-025-06458-wopenalex-snapshot
Influence of carboxymethyl chitosan chain length on its interaction with vitamin C and curcumin: molecular docking and molecular dynamic approach
inferred← citeshttps://doi.org/10.1007/s10123-019-00070-8openalex-snapshot
Molecular screening and genetic diversity analysis of anticancer Azurin-encoding and Azurin-like genes in human gut microbiome deduced through cultivation-dependent and cultivation-independent studies
inferred← citeshttps://doi.org/10.1007/s10337-025-04456-xopenalex-snapshot
An Assay for Isoprenaline HCl in a Pharmaceutical Injectable Formulation by RP-HPLC Method: A Molecular Docking and DFT Study of Isoprenaline HCl
inferred← citeshttps://doi.org/10.1007/s10528-023-10515-5openalex-snapshot
Homozygous Missense Variants in FOXI1 and TMPRSS3 Genes Associated with Non-syndromic Deafness in Moroccan Families
inferred← citeshttps://doi.org/10.1007/s10570-022-04865-3openalex-snapshot
Convertible cellulosic platforms with manageable loads of 1-hydroxybenzotriazole: their preparation and conductive behavior
inferred← citeshttps://doi.org/10.1007/s10695-020-00873-xopenalex-snapshot
Sequence analysis and spatiotemporal developmental distribution of the Cat-1-type transporter slc7a1a in zebrafish (Danio rerio)
inferred← citeshttps://doi.org/10.1007/s10709-023-00182-0openalex-snapshot
Physiological and genomic insights into abiotic stress of halophilic archaeon Natrinema altunense 4.1R isolated from a saline ecosystem of Tunisian desert
inferred← citeshttps://doi.org/10.1007/s10787-023-01333-7openalex-snapshot
Attenuation of CFA-induced chronic inflammation by a bicyclic monoterpene fenchone targeting inducible nitric oxide, prostaglandins, C-reactive protein and urea
inferred← citeshttps://doi.org/10.1007/s10787-024-01465-4openalex-snapshot
RETRACTED ARTICLE: Molecular insights of Eucalyptol (1,8-Cineole) as an anti-arthritic agent: in vivo and in silico analysis of IL-17, IL-10, NF-κB, 5-LOX and COX-2
inferred← citeshttps://doi.org/10.1007/s10787-024-01480-5openalex-snapshot
Arbutin attenuates CFA-induced arthritis by modulating expression levels of 5-LOX, NF‑κB, IL-17, PGE-2 and TNF-α
inferred← citeshttps://doi.org/10.1007/s10787-024-01569-xopenalex-snapshot
β-Citronellol: a potential anti-inflammatory and gastro-protective agent-mechanistic insights into its modulatory effects on COX-II, 5-LOX, eNOS, and ICAM-1 pathways through in vitro, in vivo, in silico, and network pharmacology studies
inferred← citeshttps://doi.org/10.1007/s10822-015-9878-8openalex-snapshot
Activity prediction of substrates in NADH-dependent carbonyl reductase by docking requires catalytic constraints and charge parameterization of catalytic zinc environment
inferred← citeshttps://doi.org/10.1007/s10822-017-0064-zopenalex-snapshot
Relative binding affinity prediction of farnesoid X receptor in the D3R Grand Challenge 2 using FEP+
inferred← citeshttps://doi.org/10.1007/s10822-023-00516-2openalex-snapshot
Insight on the mechanism of hexameric Pseudin-4 against bacterial membrane-mimetic environment
inferred← citeshttps://doi.org/10.1007/s10822-025-00661-wopenalex-snapshot
Fungal metabolite Ochratoxin A inhibits MrkD1P of multidrug-resistant Klebsiella pneumoniae: Integrated computational and in vitro validation
inferred← citeshttps://doi.org/10.1007/s10822-025-00682-5openalex-snapshot
Molecular structure, DFT computations, and docking studies of an imidazo[1,2-a]pyridine derivative containing 1,2,3-triazole and 4-bromophenyl moieties
inferred← citeshttps://doi.org/10.1007/s10853-018-03187-9openalex-snapshot
Bioinformatics and enzymatics investigation of Trametes laccase for optical biosensing application
inferred← citeshttps://doi.org/10.1007/s10853-022-07195-8openalex-snapshot
Drug repurposing for SARS-CoV-2: a high-throughput molecular docking, molecular dynamics, machine learning, and DFT study
inferred← citeshttps://doi.org/10.1007/s10858-026-00493-2openalex-snapshot
Solution NMR study of the titin I-band IgI domain I82 shows unusual conformational dynamics
inferred← citeshttps://doi.org/10.1007/s10867-023-09650-2openalex-snapshot
Structural insights into the pathogenicity of point mutations in human acyl-CoA dehydrogenase homotetramers
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