On the public citation graph

gargammel: a sequence simulator for ancient DNA

https://doi.org/10.1093/bioinformatics/btw670

0 signed · 147 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.

Claim with ORCID

Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.

See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1038/emboj.2009.222openalex-snapshot

The Neandertal genome and ancient DNA authenticity

inferredcites →https://doi.org/10.1038/nature13025openalex-snapshot

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

inferredcites →https://doi.org/10.1073/pnas.0704665104openalex-snapshot

Patterns of damage in genomic DNA sequences from a Neandertal

inferredcites →https://doi.org/10.1093/bioinformatics/btr708openalex-snapshot

ART: a next-generation sequencing read simulator

inferredcites →https://doi.org/10.1093/bioinformatics/btt193openalex-snapshot

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot

Testing for Ancient Admixture between Closely Related Populations

inferredcites →https://doi.org/10.1093/sysbio/syw059openalex-snapshot

Evolutionary Patterns and Processes: Lessons from Ancient DNA

inferredcites →https://doi.org/10.1186/1471-2164-13-178openalex-snapshot

Improving ancient DNA read mapping against modern reference genomes

inferredcites →https://doi.org/10.1371/journal.pone.0078575openalex-snapshot

Ligation Bias in Illumina Next-Generation DNA Libraries: Implications for Sequencing Ancient Genomes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.12688/openreseurope.14936.1zenodo-depositor-declared

MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes

inferred← citeshttps://doi.org/10.12688/openreseurope.14936.2zenodo-depositor-declared

MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes

inferred← citeshttps://doi.org/10.12688/openreseurope.14936.3zenodo-depositor-declared

MTaxi: A comparative tool for taxon identification of ultra low coverage ancient genomes

inferred← citeshttps://doi.org/10.1002/9781119487845.ch10openalex-snapshot

Population Genomic Analyses of DNA from Ancient Remains

inferred← citeshttps://doi.org/10.1002/ece3.6925openalex-snapshot

Using in silico predicted ancestral genomes to improve the efficiency of paleogenome reconstruction

inferred← citeshttps://doi.org/10.1002/ece3.7056openalex-snapshot

An efficient pipeline for ancient DNA mapping and recovery of endogenous ancient DNA from whole‐genome sequencing data

inferred← citeshttps://doi.org/10.1002/edn3.593openalex-snapshot

Enriching barcoding markers in environmental samples utilizing a phylogenetic probe design: Insights from mock communities

inferred← citeshttps://doi.org/10.1007/13836_2018_17openalex-snapshot

Ancient RNA

inferred← citeshttps://doi.org/10.1007/978-1-4939-9176-1_17openalex-snapshot

Authentication and Assessment of Contamination in Ancient DNA

inferred← citeshttps://doi.org/10.1007/s00239-026-10347-yopenalex-snapshot

Co-mutation Based Genetic Networks to Infer Temporal Mutation Dynamics in Ancient Human Mitochondrial Genomes

inferred← citeshttps://doi.org/10.1016/j.cell.2020.04.046openalex-snapshot

Illuminating Genetic Mysteries of the Dead Sea Scrolls

inferred← citeshttps://doi.org/10.1016/j.cell.2021.03.039openalex-snapshot

The genomic history of the Aegean palatial civilizations

inferred← citeshttps://doi.org/10.1016/j.cell.2025.04.015openalex-snapshot

Tracing the evolutionary history of the CCR5delta32 deletion via ancient and modern genomes

inferred← citeshttps://doi.org/10.1016/j.cub.2021.06.027openalex-snapshot

Human inbreeding has decreased in time through the Holocene

inferred← citeshttps://doi.org/10.1016/j.cub.2022.02.027openalex-snapshot

Probing the genomic limits of de-extinction in the Christmas Island rat

inferred← citeshttps://doi.org/10.1016/j.cub.2024.03.051openalex-snapshot

Colonial-driven extinction of the blue antelope despite genomic adaptation to low population size

inferred← citeshttps://doi.org/10.1016/j.isci.2023.108066openalex-snapshot

Review: Computational analysis of human skeletal remains in ancient DNA and forensic genetics

inferred← citeshttps://doi.org/10.1016/j.quaint.2020.11.019openalex-snapshot

Do I have something in my teeth? The trouble with genetic analyses of diet from archaeological dental calculus

inferred← citeshttps://doi.org/10.1038/s41431-023-01430-9openalex-snapshot

Record-matching of STR profiles with fragmentary genomic SNP data

inferred← citeshttps://doi.org/10.1038/s41467-024-53920-zopenalex-snapshot

Exploring the potential of dental calculus to shed light on past human migrations in Oceania

inferred← citeshttps://doi.org/10.1038/s41467-025-66343-1openalex-snapshot

Palaeogenomics suggest domesticated camelid herding and wild camelid hunting in early pastoralist societies in the Atacama Desert

inferred← citeshttps://doi.org/10.1038/s41467-026-72977-6openalex-snapshot

Ground squirrel coprolites preserve complex archives of ancient environmental DNA over 700,000 years

inferred← citeshttps://doi.org/10.1038/s41586-021-03532-0openalex-snapshot

Reconstruction of ancient microbial genomes from the human gut

inferred← citeshttps://doi.org/10.1038/s41586-025-09192-8openalex-snapshot

The spatiotemporal distribution of human pathogens in ancient Eurasia

inferred← citeshttps://doi.org/10.1038/s41598-020-64312-wopenalex-snapshot

Targeted analysis of polymorphic loci from low-coverage shotgun sequence data allows accurate genotyping of HLA genes in historical human populations

inferred← citeshttps://doi.org/10.1038/s41598-020-75163-wopenalex-snapshot

A systematic investigation of human DNA preservation in medieval skeletons

inferred← citeshttps://doi.org/10.1038/s41598-024-56584-3openalex-snapshot

Assessing the impact of post-mortem damage and contamination on imputation performance in ancient DNA

inferred← citeshttps://doi.org/10.1038/s41598-024-64818-7openalex-snapshot

Metagenomic and paleopathological analyses of a historic documented collection explore ancient dental calculus as a diagnostic tool

inferred← citeshttps://doi.org/10.1038/s41598-024-82449-wopenalex-snapshot

Ancient DNA HLA typing reveals significant shifts in frequency in Europe since the Neolithic

inferred← citeshttps://doi.org/10.1038/s43586-020-00011-0openalex-snapshot

Ancient DNA analysis

inferred← citeshttps://doi.org/10.1073/pnas.2532064123openalex-snapshot

MHC-I diversity enables rapid adaptation during a viral pandemic in wild rabbit populations

inferred← citeshttps://doi.org/10.1088/1742-6596/1391/1/012045openalex-snapshot

Novel approach for accurate detection of contaminating human mitochondrial DNA in next-generation sequencing data

inferred← citeshttps://doi.org/10.1093/bfgp/elz033openalex-snapshot

A broad survey of DNA sequence data simulation tools

inferred← citeshttps://doi.org/10.1093/bib/bbab076openalex-snapshot

Systematic benchmark of ancient DNA read mapping

inferred← citeshttps://doi.org/10.1093/bib/bbae646openalex-snapshot

Filtering out the noise: metagenomic classifiers optimize ancient DNA mapping

inferred← citeshttps://doi.org/10.1093/bioadv/vbag113openalex-snapshot

How low can you go? Establishing detection limits for rare eukaryotes in Southern Ocean sedimentary ancient DNA

inferred← citeshttps://doi.org/10.1093/bioinformatics/btad041openalex-snapshot

NGSNGS: next-generation simulator for next-generation sequencing data

inferred← citeshttps://doi.org/10.1093/bioinformatics/btae436openalex-snapshot

Unravelling reference bias in ancient DNA datasets

inferred← citeshttps://doi.org/10.1093/bioinformatics/btag004openalex-snapshot

sedimix : a workflow for the analysis of hominin nuclear DNA sequences from sediments

inferred← citeshttps://doi.org/10.1093/bioinformatics/btag155openalex-snapshot

FALCON2: compression-based metagenomic classification of ancient viruses

inferred← citeshttps://doi.org/10.1093/bioinformatics/btz660openalex-snapshot

A likelihood method for estimating present-day human contamination in ancient male samples using low-depth X-chromosome data

inferred← citeshttps://doi.org/10.1093/dnares/dsy029openalex-snapshot

ARIADNA: machine learning method for ancient DNA variant discovery

inferred← citeshttps://doi.org/10.1093/g3journal/jkaf172openalex-snapshot

Estimating allele frequencies, ancestry proportions and genotype likelihoods in the presence of mapping bias

inferred← citeshttps://doi.org/10.1093/gbe/evaf251openalex-snapshot

Mapping the Genomic Limits of De-Extinction in the Face of Ancient DNA Degradation

inferred← citeshttps://doi.org/10.1093/gigascience/giz025openalex-snapshot

DamMet: ancient methylome mapping accounting for errors, true variants, and post-mortem DNA damage

inferred← citeshttps://doi.org/10.1093/molbev/msae203openalex-snapshot

soibean : High-Resolution Taxonomic Identification of Ancient Environmental DNA Using Mitochondrial Pangenome Graphs

inferred← citeshttps://doi.org/10.1093/molbev/msaf006openalex-snapshot

Read Length Dominates Phylogenetic Placement Accuracy of Ancient DNA Reads

inferred← citeshttps://doi.org/10.1093/molbev/msaf305openalex-snapshot

Quick Analysis of Sedimentary Ancient DNA Using quicksand

inferred← citeshttps://doi.org/10.1099/mgen.0.000123openalex-snapshot

Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes

inferred← citeshttps://doi.org/10.1101/2020.05.20.106971openalex-snapshot

A systematic investigation of human DNA preservation in medieval skeletons

inferred← citeshttps://doi.org/10.1101/2021.12.16.472923openalex-snapshot

Reconstructing mitochondrial genomes from ancient DNA through iterative mapping: an evaluation of software, parameters, and bait reference

inferred← citeshttps://doi.org/10.1101/2022.05.06.490351openalex-snapshot

Metagenomic analysis of coprolites from three Late Pleistocene megaherbivores from the Southwestern United States

inferred← citeshttps://doi.org/10.1101/2022.06.28.497888openalex-snapshot

Benchmarking freely available human leukocyte antigen typing algorithms across varying genes, coverages and typing resolutions

inferred← citeshttps://doi.org/10.1101/2022.12.06.519264openalex-snapshot

metaDMG – A Fast and Accurate Ancient DNA Damage Toolkit for Metagenomic Data

inferred← citeshttps://doi.org/10.1101/2023.06.15.23290026openalex-snapshot

Tracing the evolutionary path of the CCR5delta32 deletion via ancient and modern genomes

inferred← citeshttps://doi.org/10.1101/2023.07.17.549303openalex-snapshot

Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA

inferred← citeshttps://doi.org/10.1101/2023.09.28.560049openalex-snapshot

Simulation-based Benchmarking of Ancient Haplotype Inference for Detecting Population Structure

inferred← citeshttps://doi.org/10.1101/2023.10.06.561165openalex-snapshot

The spatiotemporal distribution of human pathogens in ancient Eurasia and the emergence of zoonotic diseases

inferred← citeshttps://doi.org/10.1101/2023.10.18.563027openalex-snapshot

Exploring archaeogenetic studies of dental calculus to shed light on past human migrations in Oceania

inferred← citeshttps://doi.org/10.1101/2024.01.23.576660openalex-snapshot

READv2: Advanced and user-friendly detection of biological relatedness in archaeogenomics

inferred← citeshttps://doi.org/10.1101/2024.08.09.607291openalex-snapshot

CarpeDeam: A De Novo Metagenome Assembler for Heavily Damaged Ancient Datasets

inferred← citeshttps://doi.org/10.1101/2024.09.18.613623openalex-snapshot

An efficient pipeline for creating metagenomic-assembled genomes from ancient oral microbiomes

inferred← citeshttps://doi.org/10.1101/2025.03.31.646431openalex-snapshot

Refining filtering criteria for accurate taxonomic classification of ancient metagenomic data

inferred← citeshttps://doi.org/10.1101/2025.11.07.687203openalex-snapshot

Metagenomic classification of ancient viruses

inferred← citeshttps://doi.org/10.1101/782755openalex-snapshot

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

inferred← citeshttps://doi.org/10.1111/1755-0998.13009openalex-snapshot

Index hopping on the Illumina HiseqX platform and its consequences for ancient DNA studies

inferred← citeshttps://doi.org/10.1111/1755-0998.13608openalex-snapshot

A theoretical analysis of taxonomic binning accuracy

inferred← citeshttps://doi.org/10.1111/1755-0998.13960openalex-snapshot

Benchmarking kinship estimation tools for ancient genomes using pedigree simulations

inferred← citeshttps://doi.org/10.1111/1755-0998.14036openalex-snapshot

A Snakemake Toolkit for the Batch Assembly, Annotation and Phylogenetic Analysis of Mitochondrial Genomes and Ribosomal Genes From Genome Skims of Museum Collections

inferred← citeshttps://doi.org/10.1111/2041-210x.13990openalex-snapshot

Iteratively mapping ancient DNA to reconstruct highly divergent mitochondrial genomes: An evaluation of software, parameters and bait reference

inferred← citeshttps://doi.org/10.1111/2041-210x.14006openalex-snapshot

ngs LCA —A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data

inferred← citeshttps://doi.org/10.1126/science.aaw8977openalex-snapshot

Diverse variola virus (smallpox) strains were widespread in northern Europe in the Viking Age

inferred← citeshttps://doi.org/10.1126/science.adt3880openalex-snapshot

Attenuation of virulence in Yersinia pestis across three plague pandemics

inferred← citeshttps://doi.org/10.1128/msystems.00080-18openalex-snapshot

Selection of Appropriate Metagenome Taxonomic Classifiers for Ancient Microbiome Research

inferred← citeshttps://doi.org/10.1128/msystems.01315-21openalex-snapshot

Ancient Metagenomic Studies: Considerations for the Wider Scientific Community

inferred← citeshttps://doi.org/10.1128/spectrum.02662-23openalex-snapshot

Exploring antimicrobial resistance determinants in the Neanderthal microbiome

inferred← citeshttps://doi.org/10.1146/annurev-genom-091416-035526openalex-snapshot

A Robust Framework for Microbial Archaeology

inferred← citeshttps://doi.org/10.1186/s12915-018-0581-9openalex-snapshot

Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences

inferred← citeshttps://doi.org/10.1186/s13059-019-1903-0openalex-snapshot

HOPS: automated detection and authentication of pathogen DNA in archaeological remains

inferred← citeshttps://doi.org/10.1186/s13059-020-02160-7openalex-snapshot

Removing reference bias and improving indel calling in ancient DNA data analysis by mapping to a sequence variation graph

inferred← citeshttps://doi.org/10.1186/s13059-023-03083-9openalex-snapshot

aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

inferred← citeshttps://doi.org/10.1186/s13059-024-03350-3openalex-snapshot

READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

inferred← citeshttps://doi.org/10.1186/s13059-024-03459-5openalex-snapshot

GenomeDelta: detecting recent transposable element invasions without repeat library

inferred← citeshttps://doi.org/10.1186/s13059-024-03462-wopenalex-snapshot

Pre-processing of paleogenomes: mitigating reference bias and postmortem damage in ancient genome data

inferred← citeshttps://doi.org/10.1186/s13059-025-03818-wopenalex-snapshot

ParaRef: a decontaminated reference database for parasite detection in ancient and modern metagenomic datasets

inferred← citeshttps://doi.org/10.1186/s13059-025-03839-5openalex-snapshot

CarpeDeam: a de novo metagenome assembler for heavily damaged ancient datasets

inferred← citeshttps://doi.org/10.1186/s13059-026-04016-yopenalex-snapshot

Evaluating the performance of ancient DNA genetic relatedness estimation methods using high-fidelity pedigree simulations

inferred← citeshttps://doi.org/10.1186/s13059-026-04242-4openalex-snapshot

COSIGT: population-scalable genotyping of complex loci from low-coverage sequencing data using pangenome graphs

inferred← citeshttps://doi.org/10.12794/metadc2356162openalex-snapshot

Towards More Robust Metagenome Profiling: Modeling and Analysis

inferred← citeshttps://doi.org/10.1360/csb-2025-5786openalex-snapshot

Adaptation and evolution of ancient organisms from an epigenetic perspective

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010493openalex-snapshot

HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1010788openalex-snapshot

CONGA: Copy number variation genotyping in ancient genomes and low-coverage sequencing data

inferred← citeshttps://doi.org/10.1371/journal.pcbi.1011148openalex-snapshot

HaploCart: Human mtDNA haplogroup classification using a pangenomic reference graph

inferred← citeshttps://doi.org/10.1371/journal.pgen.1008302openalex-snapshot

The presence and impact of reference bias on population genomic studies of prehistoric human populations

inferred← citeshttps://doi.org/10.1371/journal.pone.0195491openalex-snapshot

Estimating genetic kin relationships in prehistoric populations

inferred← citeshttps://doi.org/10.1534/genetics.119.302057openalex-snapshot

Joint Estimates of Heterozygosity and Runs of Homozygosity for Modern and Ancient Samples

inferred← citeshttps://doi.org/10.21203/rs.3.rs-9406784/v1openalex-snapshot

Imputation and Maximum Likelihood Haplotype Refinement of Simulated Ancient Mitochondrial Genomes

inferred← citeshttps://doi.org/10.3389/fbinf.2023.1260486openalex-snapshot

Benchmarking software tools for trimming adapters and merging next-generation sequencing data for ancient DNA

inferred← citeshttps://doi.org/10.3389/fevo.2020.00105openalex-snapshot

Assessing DNA Sequence Alignment Methods for Characterizing Ancient Genomes and Methylomes

inferred← citeshttps://doi.org/10.3389/fevo.2022.888421openalex-snapshot

MetaDamage tool: Examining post-mortem damage in sedaDNA on a metagenomic scale

inferred← citeshttps://doi.org/10.3389/fgene.2021.619950openalex-snapshot

New Insights Into Mitochondrial DNA Reconstruction and Variant Detection in Ancient Samples

inferred← citeshttps://doi.org/10.3389/fgene.2026.1937765openalex-snapshot

The “mobile bricks” of human evolution: how transposable elements shaped human phenotypes

inferred← citeshttps://doi.org/10.3389/fimmu.2022.987655openalex-snapshot

Benchmarking freely available HLA typing algorithms across varying genes, coverages and typing resolutions

inferred← citeshttps://doi.org/10.3389/fmicb.2026.1603339openalex-snapshot

Refining filtering criteria of Kraken family of tools for accurate taxonomic profiling of ancient metagenomic data

inferred← citeshttps://doi.org/10.3390/genes14020479openalex-snapshot

Advancements and Challenges in Ancient DNA Research: Bridging the Global North–South Divide

inferred← citeshttps://doi.org/10.3390/genes9030157openalex-snapshot

Testing of Alignment Parameters for Ancient Samples: Evaluating and Optimizing Mapping Parameters for Ancient Samples Using the TAPAS Tool

inferred← citeshttps://doi.org/10.3390/microorganisms11102478openalex-snapshot

Benchmarking Metagenomic Classifiers on Simulated Ancient and Modern Metagenomic Data

inferred← citeshttps://doi.org/10.3791/63250openalex-snapshot

Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains

inferred← citeshttps://doi.org/10.3791/63250-vopenalex-snapshot

Optimized Bone Sampling Protocols for the Retrieval of Ancient DNA from Archaeological Remains

inferred← citeshttps://doi.org/10.47248//hpgg2404010005openalex-snapshot

Simulation-based benchmarking of ancient haplotype inference for detecting population structure

inferred← citeshttps://doi.org/10.47248/hpgg2404010001openalex-snapshot

GRUPS-rs, a high-performance ancient DNA genetic relatedness estimation software relying on pedigree simulations

inferred← citeshttps://doi.org/10.55730/1300-0152.2650openalex-snapshot

Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis

inferred← citeshttps://doi.org/10.6084/m9.figshare.26630542openalex-snapshot

Additional file 1 of aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

inferred← citeshttps://doi.org/10.6084/m9.figshare.26630548openalex-snapshot

Additional file 2 of aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

inferred← citeshttps://doi.org/10.6084/m9.figshare.26630551openalex-snapshot

Additional file 3 of aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

inferred← citeshttps://doi.org/10.6084/m9.figshare.26630554openalex-snapshot

Additional file 4 of aMeta: an accurate and memory-efficient ancient metagenomic profiling workflow

inferred← citeshttps://doi.org/10.6084/m9.figshare.26759471openalex-snapshot

Additional file 1 of READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

inferred← citeshttps://doi.org/10.6084/m9.figshare.26759474openalex-snapshot

Additional file 2 of READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

inferred← citeshttps://doi.org/10.6084/m9.figshare.26759477openalex-snapshot

Additional file 3 of READv2: advanced and user-friendly detection of biological relatedness in archaeogenomics

inferred← citeshttps://doi.org/10.64898/2026.01.28.702372openalex-snapshot

MAT-classifier: A memory-efficient pipeline for accurate genus-level profiling from ancient metagenomic data

inferred← citeshttps://doi.org/10.64898/2026.02.05.704023openalex-snapshot

Population-scalable genotyping from low-coverage sequencing data using pangenome graphs

inferred← citeshttps://doi.org/10.64898/2026.04.20.719564openalex-snapshot

DNAharvester: A Nextflow Pipeline for Analysing Highly Degraded DNA from Ancient and Historical Specimens

inferred← citeshttps://doi.org/10.64898/2026.06.17.732633openalex-snapshot

DeepCDS: Ab initio coding sequence prediction in prokaryotic short nucleotide sequences

inferred← citeshttps://doi.org/10.64898/2026.07.03.735781openalex-snapshot

Molecular Clock Dating of Ancient Environmental DNA Reveals Damage Beyond Deamination

inferred← citeshttps://doi.org/10.64898/2026.07.15.738373openalex-snapshot

Ancient whole genomes reveal regional selection during adaptation to Neolithic lifestyle in Western Eurasia

inferred← citeshttps://doi.org/10.64898/2026.09.24.754018openalex-snapshot

SCAR: Controlled mutations, ancient DNA damage, and fragmentation of fasta and fastq sequences

inferred← citeshttps://doi.org/10.70675/772b8260z73abz4d20za3c3zac997e1a9f2fopenalex-snapshot

Phylogeny and evolution of pigeons and doves (Columbidae) at different space and time scales

inferred← citeshttps://doi.org/10.70675/afd704b6z444cz4392z8f50z1695fba1c117openalex-snapshot

Epigenomic study on the domestication of the horse using ancient DNA

inferred← citeshttps://doi.org/10.7287/peerj.11845v0.1/reviews/1openalex-snapshot

Peer Review #1 of "PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.11845v0.1/reviews/2openalex-snapshot

Peer Review #2 of "PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.6594v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Assessing alignment-based taxonomic classification of ancient microbial DNA (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.6594v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Assessing alignment-based taxonomic classification of ancient microbial DNA (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.6594v0.2/reviews/1openalex-snapshot

Peer Review #1 of "Assessing alignment-based taxonomic classification of ancient microbial DNA (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.6594v0.2/reviews/2openalex-snapshot

Peer Review #2 of "Assessing alignment-based taxonomic classification of ancient microbial DNA (v0.2)"

inferred← citeshttps://doi.org/10.7717/peerj.11845openalex-snapshot

PyDamage: automated ancient damage identification and estimation for contigs in ancient DNA de novo assembly

inferred← citeshttps://doi.org/10.7717/peerj.12784openalex-snapshot

Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study

inferred← citeshttps://doi.org/10.7717/peerj.16770openalex-snapshot

Benchmarking a targeted 16S ribosomal RNA gene enrichment approach to reconstruct ancient microbial communities

inferred← citeshttps://doi.org/10.7717/peerj.6594openalex-snapshot

Assessing alignment-based taxonomic classification of ancient microbial DNA

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.