On the public citation graph

Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

0 signed · 108 inferred · view as graph

Inferred edges come from two machine sources: sweeps of open repository metadata (mostly SSRN and Zenodo), and a bulk OpenAlex citation snapshot. Every row below is labelled with the one it came from. Neither is a complete citation index — absence here is not evidence of absence.

Is this your work? Sign in with ORCID and put your name on the claims that are yours.
Claim with ORCID
Reference health. See whether every reference in this work resolves to a known work and none has been retracted — and get a dated CiteStamped badge you can embed.
See reference health

What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/pl00007853openalex-snapshot
Chemotherapy-induced peripheral neuropathy
inferredcites →https://doi.org/10.1016/0020-7101(95)01135-2openalex-snapshot
A new drug classification for computer systems: the ATC extension code
inferredcites →https://doi.org/10.1016/bs.pmch.2017.12.003openalex-snapshot
Big Data in Drug Discovery
inferredcites →https://doi.org/10.1016/j.amjcard.2020.09.012openalex-snapshot
Relation of Statin Use Prior to Admission to Severity and Recovery Among COVID-19 Inpatients
inferredcites →https://doi.org/10.1016/j.cell.2017.10.049openalex-snapshot
A Next Generation Connectivity Map: L1000 Platform and the First 1,000,000 Profiles
inferredcites →https://doi.org/10.1016/j.celrep.2021.108959openalex-snapshot
Drug repurposing screens reveal cell-type-specific entry pathways and FDA-approved drugs active against SARS-Cov-2
inferredcites →https://doi.org/10.1016/j.cels.2017.11.001openalex-snapshot
The Library of Integrated Network-Based Cellular Signatures NIH Program: System-Level Cataloging of Human Cells Response to Perturbations
inferredcites →https://doi.org/10.1016/j.cmet.2020.06.015openalex-snapshot
In-Hospital Use of Statins Is Associated with a Reduced Risk of Mortality among Individuals with COVID-19
inferredcites →https://doi.org/10.1016/j.ijantimicag.2020.105951openalex-snapshot
Coronavirus disease 2019 (COVID-19): current status and future perspectives
inferredcites →https://doi.org/10.1016/j.jbi.2012.06.005openalex-snapshot
Cross-terminology mapping challenges: A demonstration using medication terminological systems
inferredcites →https://doi.org/10.1016/j.jgg.2018.07.002openalex-snapshot
The DrugPattern tool for drug set enrichment analysis and its prediction for beneficial effects of oxLDL on type 2 diabetes
inferredcites →https://doi.org/10.1016/j.patter.2020.100090openalex-snapshot
The COVID-19 Drug and Gene Set Library
inferredcites →https://doi.org/10.1016/j.patter.2021.100213openalex-snapshot
Appyters: Turning Jupyter Notebooks into data-driven web apps
inferredcites →https://doi.org/10.1021/acsmedchemlett.0c00521openalex-snapshot
Identification of 14 Known Drugs as Inhibitors of the Main Protease of SARS-CoV-2
inferredcites →https://doi.org/10.1021/ci010132ropenalex-snapshot
Reoptimization of MDL Keys for Use in Drug Discovery
inferredcites →https://doi.org/10.1038/nbt1068openalex-snapshot
A small molecule–kinase interaction map for clinical kinase inhibitors
inferredcites →https://doi.org/10.1038/ncomms12846openalex-snapshot
Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd
inferredcites →https://doi.org/10.1038/ncomms13768openalex-snapshot
Correction: Corrigendum: Flux of signalling endosomes undergoing axonal retrograde transport is encoded by presynaptic activity and TrkB
inferredcites →https://doi.org/10.1038/nm.4306openalex-snapshot
The Drug Repurposing Hub: a next-generation drug library and information resource
inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
inferredcites →https://doi.org/10.1038/nrd.2018.168openalex-snapshot
Drug repurposing: progress, challenges and recommendations
inferredcites →https://doi.org/10.1038/nrd1468openalex-snapshot
Drug repositioning: identifying and developing new uses for existing drugs
inferredcites →https://doi.org/10.1038/nrd3681openalex-snapshot
Diagnosing the decline in pharmaceutical R&D efficiency
inferredcites →https://doi.org/10.1038/nrd4609openalex-snapshot
An analysis of the attrition of drug candidates from four major pharmaceutical companies
inferredcites →https://doi.org/10.1038/nri3755openalex-snapshot
25-Hydroxycholesterols in innate and adaptive immunity
inferredcites →https://doi.org/10.1038/s41392-020-00292-7openalex-snapshot
COVID-19-activated SREBP2 disturbs cholesterol biosynthesis and leads to cytokine storm
inferredcites →https://doi.org/10.1038/s41586-020-2012-7openalex-snapshot
A pneumonia outbreak associated with a new coronavirus of probable bat origin
inferredcites →https://doi.org/10.1038/s41586-020-2577-1openalex-snapshot
Discovery of SARS-CoV-2 antiviral drugs through large-scale compound repurposing
inferredcites →https://doi.org/10.1038/s41587-021-00839-1openalex-snapshot
Biological activity-based modeling identifies antiviral leads against SARS-CoV-2
inferredcites →https://doi.org/10.1038/s41598-020-58174-5openalex-snapshot
First annulus formation in the European anchovy; a two-stage approach for robust validation
inferredcites →https://doi.org/10.1038/s41598-020-70143-6openalex-snapshot
In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication
inferredcites →https://doi.org/10.1073/pnas.0506580102openalex-snapshot
Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
inferredcites →https://doi.org/10.1073/pnas.0711741105openalex-snapshot
Discovery of a selective inhibitor of oncogenic B-Raf kinase with potent antimelanoma activity
inferredcites →https://doi.org/10.1073/pnas.2105815118openalex-snapshot
Morphological cell profiling of SARS-CoV-2 infection identifies drug repurposing candidates for COVID-19
inferredcites →https://doi.org/10.1080/23808993.2019.1617632openalex-snapshot
Use of big data in drug development for precision medicine: an update
inferredcites →https://doi.org/10.1093/ajcp/41.1.93bopenalex-snapshot
Progress in Medicinal Chemistry
inferredcites →https://doi.org/10.1093/bioinformatics/btv536openalex-snapshot
Drug-set enrichment analysis: a novel tool to investigate drug mode of action
inferredcites →https://doi.org/10.1093/bioinformatics/btw168openalex-snapshot
Drug-induced adverse events prediction with the LINCS L1000 data
inferredcites →https://doi.org/10.1093/bioinformatics/bty060openalex-snapshot
L1000FWD: fireworks visualization of drug-induced transcriptomic signatures
inferredcites →https://doi.org/10.1093/ehjcvp/pvaa042openalex-snapshot
Statin therapy in COVID-19 infection
inferredcites →https://doi.org/10.1093/ehjcvp/pvaa055openalex-snapshot
Statin therapy in COVID-19 infection: much more than a single pathway
inferredcites →https://doi.org/10.1093/gigascience/giw014openalex-snapshot
A dataset of images and morphological profiles of 30 000 small-molecule treatments using the Cell Painting assay
inferredcites →https://doi.org/10.1093/nar/30.1.163openalex-snapshot
PharmGKB: the Pharmacogenetics Knowledge Base
inferredcites →https://doi.org/10.1093/nar/gkh063openalex-snapshot
The KEGG resource for deciphering the genome
inferredcites →https://doi.org/10.1093/nar/gkp937openalex-snapshot
STITCH 2: an interaction network database for small molecules and proteins
inferredcites →https://doi.org/10.1093/nar/gkv1075openalex-snapshot
The SIDER database of drugs and side effects
inferredcites →https://doi.org/10.1093/nar/gkv951openalex-snapshot
PubChem Substance and Compound databases
inferredcites →https://doi.org/10.1093/nar/gkw377openalex-snapshot
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
inferredcites →https://doi.org/10.1093/nar/gkw993openalex-snapshot
DrugCentral: online drug compendium
inferredcites →https://doi.org/10.1093/nar/gkx1037openalex-snapshot
DrugBank 5.0: a major update to the DrugBank database for 2018
inferredcites →https://doi.org/10.1093/nar/gky1033openalex-snapshot
PubChem 2019 update: improved access to chemical data
inferredcites →https://doi.org/10.1093/nar/gky1055openalex-snapshot
The Gene Ontology Resource: 20 years and still GOing strong
inferredcites →https://doi.org/10.1093/nar/gky294openalex-snapshot
An update on PUG-REST: RESTful interface for programmatic access to PubChem
inferredcites →https://doi.org/10.1093/nar/gkz393openalex-snapshot
Geneshot: search engine for ranking genes from arbitrary text queries
inferredcites →https://doi.org/10.1093/nar/gkz401openalex-snapshot
WebGestalt 2019: gene set analysis toolkit with revamped UIs and APIs
inferredcites →https://doi.org/10.1101/2020.03.25.008482openalex-snapshot
Broad anti-coronaviral activity of FDA approved drugs against SARS-CoV-2 in vitro and SARS-CoV in vivo
inferredcites →https://doi.org/10.1101/2020.04.21.054387openalex-snapshot
Identification of potential treatments for COVID-19 through artificial intelligence-enabled phenomic analysis of human cells infected with SARS-CoV-2
inferredcites →https://doi.org/10.1101/2020.07.12.199687openalex-snapshot
Modulating the transcriptional landscape of SARS-CoV-2 as an effective method for developing antiviral compounds
inferredcites →https://doi.org/10.1126/scitranslmed.3003377openalex-snapshot
Data-Driven Prediction of Drug Effects and Interactions
inferredcites →https://doi.org/10.1128/aac.00819-20openalex-snapshot
Identification of Antiviral Drug Candidates against SARS-CoV-2 from FDA-Approved Drugs
inferredcites →https://doi.org/10.1128/jvi.01218-20openalex-snapshot
Broad Anti-coronavirus Activity of Food and Drug Administration-Approved Drugs against SARS-CoV-2 In Vitro and SARS-CoV In Vivo
inferredcites →https://doi.org/10.1155/2015/624627openalex-snapshot
Vitamin A, Cancer Treatment and Prevention: The New Role of Cellular Retinol Binding Proteins
inferredcites →https://doi.org/10.1186/1471-2105-14-128openalex-snapshot
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
inferredcites →https://doi.org/10.1186/1758-2946-6-s1-o15openalex-snapshot
Combining pharmacophore- and MD-based modelling for phase II metabolism prediction
inferredcites →https://doi.org/10.1186/s13321-014-0043-5openalex-snapshot
UniChem: extension of InChI-based compound mapping to salt, connectivity and stereochemistry layers
inferredcites →https://doi.org/10.21203/rs.3.rs-23951/v1openalex-snapshot
Identification of inhibitors of SARS-CoV-2 in-vitro cellular toxicity in human (Caco-2) cells using a large scale drug repurposing collection
inferredcites →https://doi.org/10.2139/ssrn.3678908openalex-snapshot
Drug Repurposing Screens Reveal FDA Approved Drugs Active Against SARS-CoV-2
inferredcites →https://doi.org/10.2307/2340521openalex-snapshot
On the Interpretation of χ 2 from Contingency Tables, and the Calculation of P
inferredcites →https://doi.org/10.2337/diaclin.23.1.9openalex-snapshot
Management of Diabetic Peripheral Neuropathy
inferredcites →https://doi.org/10.3109/10428199709050886openalex-snapshot
Vindesine in the Treatment of Leukaemia
inferredcites →https://doi.org/10.3389/fimmu.2020.586572openalex-snapshot
Identification of Potent and Safe Antiviral Therapeutic Candidates Against SARS-CoV-2
inferredcites →https://doi.org/10.3389/fphar.2020.592737openalex-snapshot
Drug Repurposing Screen for Compounds Inhibiting the Cytopathic Effect of SARS-CoV-2
inferredcites →https://doi.org/10.48550/arxiv.1201.0490openalex-snapshot
Scikit-learn: Machine Learning in Python
inferredcites →https://doi.org/10.7554/elife.26726openalex-snapshot
Systematic integration of biomedical knowledge prioritizes drugs for repurposing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.4890101openalex-extracted
Mechanism-Free Repurposing of Drugs For C9orf72-Related ALS/FTD Using Large-Scale Genomic Data
inferred← citeshttps://doi.org/10.1002/cpz1.355openalex-snapshot
Getting Started with the IDG KMC Datasets and Tools
inferred← citeshttps://doi.org/10.1007/978-981-99-2287-1_51openalex-snapshot
Pharmacology Database and Analysis Based on Cloud Computing Technology
inferred← citeshttps://doi.org/10.1007/s10822-026-00798-2openalex-snapshot
AI-driven drug–target interaction prediction: current progress, challenges, and future roadmap for precision medicine
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.04.058openalex-snapshot
A mini-review on perturbation modelling across single-cell omic modalities
inferred← citeshttps://doi.org/10.1016/j.ejmech.2025.117269openalex-snapshot
Progress of machine learning in the application of small molecule druggability prediction
inferred← citeshttps://doi.org/10.1016/j.jii.2024.100562openalex-snapshot
Industry 4.0 technologies adoption for digital transition in drug discovery and development: A review
inferred← citeshttps://doi.org/10.1016/j.neuropharm.2024.109837openalex-snapshot
Phosphoproteomics implicates glutamatergic and dopaminergic signalling in the antidepressant-like properties of the iron chelator deferiprone
inferred← citeshttps://doi.org/10.1016/j.pbiomolbio.2023.02.003openalex-snapshot
A systematic review of artificial intelligence-based COVID-19 modeling on multimodal genetic information
inferred← citeshttps://doi.org/10.1016/j.xgen.2024.100679openalex-snapshot
Mechanism-free repurposing of drugs for C9orf72-related ALS/FTD using large-scale genomic data
inferred← citeshttps://doi.org/10.1038/s41556-026-02016-5openalex-snapshot
Targeting oncogenic FLT3 uncovers a ferroptosis vulnerability through selenocysteine recoding in acute myeloid leukaemia
inferred← citeshttps://doi.org/10.1038/s41598-024-55080-yopenalex-snapshot
Expression of the checkpoint kinase BUB1 is a predictor of response to cancer therapies
inferred← citeshttps://doi.org/10.1093/bioadv/vbac013openalex-snapshot
Gene and drug landing page aggregator
inferred← citeshttps://doi.org/10.1093/nar/gkac328openalex-snapshot
SigCom LINCS: data and metadata search engine for a million gene expression signatures
inferred← citeshttps://doi.org/10.1101/2023.03.03.530952openalex-snapshot
Sequence-based prediction of the solubility of peptides containing non-natural amino acids
inferred← citeshttps://doi.org/10.1101/2025.07.11.664427openalex-snapshot
SCOPE: Revealing Hidden Mechanisms in Phenotypic Screens Through Target and Pathway Enrichment
inferred← citeshttps://doi.org/10.1101/2025.08.12.669999openalex-snapshot
The Establishment of Cell-Type Specific Gene Regulation in the Sea Urchin Embryo
inferred← citeshttps://doi.org/10.1109/tcbbio.2025.3612275openalex-snapshot
Hyperbolic Nature of Differential Expression Signatures
inferred← citeshttps://doi.org/10.1186/s12859-022-04590-5openalex-snapshot
DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules
inferred← citeshttps://doi.org/10.1186/s12859-023-05343-8openalex-snapshot
Drug mechanism enrichment analysis improves prioritization of therapeutics for repurposing
inferred← citeshttps://doi.org/10.1186/s12864-024-10048-0openalex-snapshot
DendroX: multi-level multi-cluster selection in dendrograms
inferred← citeshttps://doi.org/10.1186/s12916-023-03182-1openalex-snapshot
Predicting drug response from single-cell expression profiles of tumours
inferred← citeshttps://doi.org/10.1186/s13073-023-01277-1openalex-snapshot
Combining a prioritization strategy and functional studies nominates 5’UTR variants underlying inherited retinal disease
inferred← citeshttps://doi.org/10.3390/biom12111641openalex-snapshot
Repurposable Drugs That Interact with Steroid Responsive Gene Targets for Inner Ear Disease
inferred← citeshttps://doi.org/10.3390/cancers17213488openalex-snapshot
Integrative Multi-Omics Analyses Reveal Mechanisms of Resistance to Hsp90β-Selective Inhibition
inferred← citeshttps://doi.org/10.3390/ijms25105319openalex-snapshot
DReAmocracy: A Method to Capitalise on Prior Drug Discovery Efforts to Highlight Candidate Drugs for Repurposing
inferred← citeshttps://doi.org/10.36227/techrxiv.24630747openalex-snapshot
Hyperbolic Manifold Learning on Differential Expression Signatures
inferred← citeshttps://doi.org/10.36227/techrxiv.24630747.v1openalex-snapshot
Hyperbolic Manifold Learning on Differential Expression Signatures
inferred← citeshttps://doi.org/10.3892/or.2022.8403openalex-snapshot
In vitro characterization and rational analog design of a novel inhibitor of telomerase assembly in MDA MB 231 breast cancer cell line
inferred← citeshttps://doi.org/10.4103/1673-5374.353486openalex-snapshot
Next generation drug connectivity mapping for acquiring therapeutic agents to differentially regulate myelination
inferred← citeshttps://doi.org/10.6084/m9.figshare.19204310openalex-snapshot
Additional file 1 of DrugShot: querying biomedical search terms to retrieve prioritized lists of small molecules
inferred← citeshttps://doi.org/10.6084/m9.figshare.26591531openalex-snapshot
Additional file 1 of Drug mechanism enrichment analysis improves prioritization of therapeutics for repurposing
inferred← citeshttps://doi.org/10.6084/m9.figshare.26648313openalex-snapshot
Additional file 1 of Predicting drug response from single-cell expression profiles of tumours
inferred← citeshttps://doi.org/10.6084/m9.figshare.26648316openalex-snapshot
Additional file 2 of Predicting drug response from single-cell expression profiles of tumours
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.