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MODEM: multi-omics data envelopment and mining in maize
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/j.1537-2197.1995.tb12679.xopenalex-snapshot
Spatial genetic structure of a tropical understory shrub, PSYCHOTRIA OFFICINALIS (RuBIACEAE)
inferredcites →https://doi.org/10.1007/s00122-010-1320-yopenalex-snapshot
Genetic analysis and characterization of a new maize association mapping panel for quantitative trait loci dissection
inferredcites →https://doi.org/10.1007/s00122-016-2716-0openalex-snapshot
Genome-wide association studies of drought-related metabolic changes in maize using an enlarged SNP panel
inferredcites →https://doi.org/10.1038/ncomms3832openalex-snapshot
RNA sequencing reveals the complex regulatory network in the maize kernel
inferredcites →https://doi.org/10.1038/ncomms4438openalex-snapshot
Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights
inferredcites →https://doi.org/10.1038/ng.2484openalex-snapshot
Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels
inferredcites →https://doi.org/10.1038/ng1702openalex-snapshot
A unified mixed-model method for association mapping that accounts for multiple levels of relatedness
inferredcites →https://doi.org/10.1073/pnas.1525244113openalex-snapshot
Open chromatin reveals the functional maize genome
inferredcites →https://doi.org/10.1086/502802openalex-snapshot
A Fast and Flexible Statistical Model for Large-Scale Population Genotype Data: Applications to Inferring Missing Genotypes and Haplotypic Phase
inferredcites →https://doi.org/10.1093/bioinformatics/btm308openalex-snapshot
TASSEL: software for association mapping of complex traits in diverse samples
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SOAP2: an improved ultrafast tool for short read alignment
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/database/bar030openalex-snapshot
Ensembl BioMarts: a hub for data retrieval across taxonomic space
inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot
Inference of Population Structure Using Multilocus Genotype Data
inferredcites →https://doi.org/10.1093/mp/sst080openalex-snapshot
A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics
inferredcites →https://doi.org/10.1093/nar/gkj011openalex-snapshot
Panzea: a database and resource for molecular and functional diversity in the maize genome
inferredcites →https://doi.org/10.1101/gr.094607.109openalex-snapshot
JBrowse: A next-generation genome browser
inferredcites →https://doi.org/10.1104/pp.114.240689openalex-snapshot
Dynamic Transcriptome Landscape of Maize Embryo and Endosperm Development
inferredcites →https://doi.org/10.1104/pp.15.00052openalex-snapshot
Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize
inferredcites →https://doi.org/10.1111/j.1365-313x.2011.04527.xopenalex-snapshot
Genome‐wide atlas of transcription during maize development
inferredcites →https://doi.org/10.1111/j.1471-8286.2005.01155.xopenalex-snapshot
genalex 6: genetic analysis in Excel. Population genetic software for teaching and research
inferredcites →https://doi.org/10.1126/science.1177837openalex-snapshot
A First-Generation Haplotype Map of Maize
inferredcites →https://doi.org/10.1155/2008/496957openalex-snapshot
MaizeGDB: The Maize Model Organism Database for Basic, Translational, and Applied Research
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1371/journal.pcbi.1000770openalex-snapshot
A Bayesian Framework to Account for Complex Non-Genetic Factors in Gene Expression Levels Greatly Increases Power in eQTL Studies
inferredcites →https://doi.org/10.1371/journal.pone.0000718openalex-snapshot
An “Electronic Fluorescent Pictograph” Browser for Exploring and Analyzing Large-Scale Biological Data Sets
inferredcites →https://doi.org/10.1371/journal.pone.0028334openalex-snapshot
A Large Maize (Zea mays L.) SNP Genotyping Array: Development and Germplasm Genotyping, and Genetic Mapping to Compare with the B73 Reference Genome
inferredcites →https://doi.org/10.1371/journal.pone.0142001openalex-snapshot
Genome-Wide Association Implicates Candidate Genes Conferring Resistance to Maize Rough Dwarf Disease in Maize
inferredcites →https://doi.org/10.2307/2445869openalex-snapshot
Spatial Genetic Structure of a Tropical Understory Shrub, Psychotria officinalis (Rubiaceae)
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Multi-Omics Data Mining Techniques: Algorithms and Software
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Overview of the Bioinformatics Databases and Tools for Genome Research and Crop Improvement
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Association mapping in plants in the post-GWAS genomics era
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ZEAMAP, a Comprehensive Database Adapted to the Maize Multi-Omics Era
inferred← citeshttps://doi.org/10.1016/j.jenvman.2024.123969openalex-snapshot
Comprehensive approaches to heavy metal bioremediation: Integrating microbial insights and genetic innovations
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Identification of novel QTLs contributing to resistance against Aspergillus flavus in maize (Zea mays L.) using an enlarged genotype panel
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Multi-tissue transcriptome of Brycon amazonicus (Spix & Agassiz, 1829): insights into lipid metabolism in an Amazonian fish
inferred← citeshttps://doi.org/10.1016/j.molp.2025.04.008openalex-snapshot
Natural variations in the promoter of ZmDeSI2 encoding a deSUMOylating isopeptidase controls kernel methionine content in maize
inferred← citeshttps://doi.org/10.1016/j.xplc.2019.100010openalex-snapshot
The Past, Present, and Future of Maize Improvement: Domestication, Genomics, and Functional Genomic Routes toward Crop Enhancement
inferred← citeshttps://doi.org/10.1016/j.xplc.2021.100187openalex-snapshot
The utility of metabolomics as a tool to inform maize biology
inferred← citeshttps://doi.org/10.1038/s41477-022-01274-zopenalex-snapshot
Genome-wide dissection of changes in maize root system architecture during modern breeding
inferred← citeshttps://doi.org/10.1093/bib/bbac529openalex-snapshot
The hitchhikers’ guide to RNA sequencing and functional analysis
inferred← citeshttps://doi.org/10.1093/database/baaa044openalex-snapshot
MaizeCUBIC: a comprehensive variation database for a maize synthetic population
inferred← citeshttps://doi.org/10.1093/database/baad078openalex-snapshot
Maize Feature Store: A centralized resource to manage and analyze curated maize multi-omics features for machine learning applications
inferred← citeshttps://doi.org/10.1093/g3journal/jkab138openalex-snapshot
A capture-based assay for detection and characterization of transposon polymorphisms in maize
inferred← citeshttps://doi.org/10.1101/2024.02.26.582075openalex-snapshot
Prioritizing Maize Metabolic Gene Regulators through Multi-Omic Network Integration
inferred← citeshttps://doi.org/10.1101/2024.03.27.586967openalex-snapshot
On the contribution of genetic heterogeneity to complex traits
inferred← citeshttps://doi.org/10.1104/pp.17.00709openalex-snapshot
The Genetic Basis of Plant Architecture in 10 Maize Recombinant Inbred Line Populations
inferred← citeshttps://doi.org/10.1109/access.2020.2966590openalex-snapshot
Maize Carotenoid Gene Locus Mining Based on Conditional Gaussian Bayesian Network
inferred← citeshttps://doi.org/10.1109/tcbb.2018.2872993openalex-snapshot
Gene Regulatory Relationship Mining Using Improved Three-Phase Dependency Analysis Approach
inferred← citeshttps://doi.org/10.1111/pbi.12712openalex-snapshot
The genetic architecture of amino acids dissection by association and linkage analysis in maize
inferred← citeshttps://doi.org/10.1111/tpj.14193openalex-snapshot
Kernel size‐related genes revealed by an integrated eQTL analysis during early maize kernel development
inferred← citeshttps://doi.org/10.1111/tpj.14432openalex-snapshot
An allele of Zm PORB 2 encoding a protochlorophyllide oxidoreductase promotes tocopherol accumulation in both leaves and kernels of maize
inferred← citeshttps://doi.org/10.1155/2017/1813494openalex-snapshot
Verification of Three-Phase Dependency Analysis Bayesian Network Learning Method for Maize Carotenoid Gene Mining
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An embedded gene selection method using knockoffs optimizing neural network
inferred← citeshttps://doi.org/10.1186/s12870-018-1287-4openalex-snapshot
Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize
inferred← citeshttps://doi.org/10.1186/s12870-026-08986-wopenalex-snapshot
Genome-wide association study dissects the genetic architecture of kernel rate and its component traits in maize
inferred← citeshttps://doi.org/10.15406/jnhfe.2016.05.00164openalex-snapshot
Lysine Genetically Enriched Cereals for Improving Nutrition in Children Under 5 Years in Low- And Middle- Income Countries
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Multi-omics data integration and computational approaches to enhance gene annotations and decipher function
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State of the Field in Multi-Omics Research: From Computational Needs to Data Mining and Sharing
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WinRoots: A High-Throughput Cultivation and Phenotyping System for Plant Phenomics Studies Under Soil Stress
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Advances in “Omics” Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants
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Deciphering Pleiotropic Signatures of Regulatory SNPs in Zea mays L. Using Multi-Omics Data and Machine Learning Algorithms
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