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Plasmids Related to the Symbiotic Nitrogen Fixation Are Not Only Cooperated Functionally but Also May Have Evolved over a Time Span in Family Rhizobiaceae
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/cbic.201600373openalex-snapshot
Interkingdom Responses to Bacterial Quorum Sensing Signals Regulate Frequency and Rate of Nodulation in Legume–Rhizobia Symbiosis
inferredcites →https://doi.org/10.1007/978-3-319-64982-5_6openalex-snapshot
Rhizobium in Rice Yield and Growth Enhancement
inferredcites →https://doi.org/10.1007/s11104-015-2389-5openalex-snapshot
Arabinose and protocatechuate catabolism genes are important for growth of Rhizobium leguminosarum biovar viciae in the pea rhizosphere
inferredcites →https://doi.org/10.1007/s13199-016-0462-3openalex-snapshot
Recent changes to the classification of symbiotic, nitrogen-fixing, legume-associating bacteria: a review
inferredcites →https://doi.org/10.1007/s13199-017-0476-5openalex-snapshot
Plasmids impact on rhizobia-legumes symbiosis in diverse environments
inferredcites →https://doi.org/10.1007/s13353-014-0220-2openalex-snapshot
Functional relationships between plasmids and their significance for metabolism and symbiotic performance of Rhizobium leguminosarum bv. trifolii
inferredcites →https://doi.org/10.1016/j.ejsobi.2011.12.003openalex-snapshot
Curing of a non-symbiotic plasmid of the Rhizobium tropici strain CIAT 899 affected nodule occupancy and competitiveness of the bacteria in symbiosis with common beans
inferredcites →https://doi.org/10.1016/j.pbi.2017.12.001openalex-snapshot
Symbiotic nitrogen fixation by rhizobia — the roots of a success story
inferredcites →https://doi.org/10.1016/j.plasmid.2018.03.001openalex-snapshot
Comparative analysis of rhizobial chromosomes and plasmids to estimate their evolutionary relationships
inferredcites →https://doi.org/10.1016/j.syapm.2014.12.002openalex-snapshot
Taxonomy of rhizobia and agrobacteria from the Rhizobiaceae family in light of genomics
inferredcites →https://doi.org/10.1016/j.tig.2008.12.004openalex-snapshot
Estimating the size of the bacterial pan-genome
inferredcites →https://doi.org/10.1016/j.tim.2009.12.010openalex-snapshot
Introducing the bacterial ‘chromid’: not a chromosome, not a plasmid
inferredcites →https://doi.org/10.1016/j.tim.2012.04.003openalex-snapshot
Plasmid-mediated horizontal gene transfer is a coevolutionary process
inferredcites →https://doi.org/10.1016/j.tim.2015.10.007openalex-snapshot
Symbiosis within Symbiosis: Evolving Nitrogen-Fixing Legume Symbionts
inferredcites →https://doi.org/10.1016/j.ympev.2016.11.009openalex-snapshot
The underlying mechanisms of genetic innovation and speciation in the family Corynebacteriaceae: A phylogenomics approach
inferredcites →https://doi.org/10.1016/s0168-9525(01)02522-7openalex-snapshot
Eubacterial phylogeny based on translational apparatus proteins
inferredcites →https://doi.org/10.1038/417244aopenalex-snapshot
A non-hyperthermophilic ancestor for Bacteria
inferredcites →https://doi.org/10.1038/ncomms12219openalex-snapshot
Metabolic modelling reveals the specialization of secondary replicons for niche adaptation in Sinorhizobium meliloti
inferredcites →https://doi.org/10.1038/nrg1603openalex-snapshot
Phylogenomics and the reconstruction of the tree of life
inferredcites →https://doi.org/10.1038/nrmicro.2017.171openalex-snapshot
Rhizobia: from saprophytes to endosymbionts
inferredcites →https://doi.org/10.1038/nrmicro2091openalex-snapshot
Symbiotic use of pathogenic strategies: rhizobial protein secretion systems
inferredcites →https://doi.org/10.1038/s41467-018-07641-9openalex-snapshot
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
inferredcites →https://doi.org/10.1073/pnas.0600912103openalex-snapshot
Eukaryotic control on bacterial cell cycle and differentiation in the Rhizobium –legume symbiosis
inferredcites →https://doi.org/10.1073/pnas.1417797112openalex-snapshot
Rhizobial peptidase HrrP cleaves host-encoded signaling peptides and mediates symbiotic compatibility
inferredcites →https://doi.org/10.1073/pnas.1721395115openalex-snapshot
Comparative genomics of the nonlegume Parasponia reveals insights into evolution of nitrogen-fixing rhizobium symbioses
inferredcites →https://doi.org/10.1093/bioinformatics/19.2.301openalex-snapshot
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
inferredcites →https://doi.org/10.1093/bioinformatics/bti403openalex-snapshot
VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data
inferredcites →https://doi.org/10.1093/bioinformatics/btm585openalex-snapshot
Choosing BLAST options for better detection of orthologs as reciprocal best hits
inferredcites →https://doi.org/10.1093/bioinformatics/btr623openalex-snapshot
BadiRate: estimating family turnover rates by likelihood-based methods
inferredcites →https://doi.org/10.1093/bioinformatics/btu153openalex-snapshot
Prokka: rapid prokaryotic genome annotation
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TimeTree: A Resource for Timelines, Timetrees, and Divergence Times
inferredcites →https://doi.org/10.1093/molbev/msy248openalex-snapshot
Chromids Aid Genome Expansion and Functional Diversification in the Family Burkholderiaceae
inferredcites →https://doi.org/10.1093/nar/30.7.1575openalex-snapshot
An efficient algorithm for large-scale detection of protein families
inferredcites →https://doi.org/10.1093/nar/gkr1044openalex-snapshot
IMG: the integrated microbial genomes database and comparative analysis system
inferredcites →https://doi.org/10.1093/nar/gkr483openalex-snapshot
KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases
inferredcites →https://doi.org/10.1093/nar/gkw1092openalex-snapshot
KEGG: new perspectives on genomes, pathways, diseases and drugs
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026311openalex-snapshot
The Glutamine Synthetases of Rhizobia: Phylogenetics and Evolutionary Implications
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1094/mpmi-09-15-0215-ropenalex-snapshot
Multiplicity of Sulfate and Molybdate Transporters and Their Role in Nitrogen Fixation in Rhizobium leguminosarum bv. viciae Rlv3841
inferredcites →https://doi.org/10.1098/rsob.140133openalex-snapshot
Bacterial genospecies that are not ecologically coherent: population genomics ofRhizobium leguminosarum
inferredcites →https://doi.org/10.1099/mic.0.057281-0openalex-snapshot
Glycerol utilization by Rhizobium leguminosarum requires an ABC transporter and affects competition for nodulation
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1111/1462-2920.13415openalex-snapshot
Population genomics of the symbiotic plasmids of sympatric nitrogen‐fixing Rhizobium species associated with Phaseolus vulgaris
inferredcites →https://doi.org/10.1111/j.1365-2699.2011.02644.xopenalex-snapshot
Evolutionary islands in the Andes: persistence and isolation explain high endemism in Andean dry tropical forests
inferredcites →https://doi.org/10.1111/j.1462-5822.2011.01736.xopenalex-snapshot
Symbiosis specificity in the legume - rhizobial mutualism
inferredcites →https://doi.org/10.1111/j.1744-7909.2010.00899.xopenalex-snapshot
Molecular Analysis of Legume Nodule Development and Autoregulation
inferredcites →https://doi.org/10.1126/science.1226521openalex-snapshot
Real-Time Evolution of New Genes by Innovation, Amplification, and Divergence
inferredcites →https://doi.org/10.1126/science.aat1743openalex-snapshot
Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis
inferredcites →https://doi.org/10.1128/aem.00515-09openalex-snapshot
Rhizobiumsp. Strain NGR234 Possesses a Remarkable Number of Secretion Systems
inferredcites →https://doi.org/10.1128/aem.00542-11openalex-snapshot
Biodiversity and Biogeography of Rhizobia Associated with Soybean Plants Grown in the North China Plain
inferredcites →https://doi.org/10.1128/aem.03037-13openalex-snapshot
Replicon-Dependent Differentiation of Symbiosis-Related Genes in Sinorhizobium Strains Nodulating Glycine max
inferredcites →https://doi.org/10.1128/jb.01758-12openalex-snapshot
The tRNA arg Gene and engA Are Essential Genes on the 1.7-Mb pSymB Megaplasmid of Sinorhizobium meliloti and Were Translocated Together from the Chromosome in an Ancestral Strain
inferredcites →https://doi.org/10.1128/mmbr.00019-17openalex-snapshot
The Divided Bacterial Genome: Structure, Function, and Evolution
inferredcites →https://doi.org/10.1128/mmbr.67.4.574-592.2003openalex-snapshot
Quorum Sensing in Nitrogen-Fixing Rhizobia
inferredcites →https://doi.org/10.1146/annurev-arplant-050312-120235openalex-snapshot
Transport and Metabolism in Legume-Rhizobia Symbioses
inferredcites →https://doi.org/10.1146/annurev-genet-110410-132549openalex-snapshot
The Rules of Engagement in the Legume-Rhizobial Symbiosis
inferredcites →https://doi.org/10.1186/1471-2105-10-421openalex-snapshot
BLAST+: architecture and applications
inferredcites →https://doi.org/10.1186/1471-2148-11-341openalex-snapshot
Diversification of land plants: insights from a family-level phylogenetic analysis
inferredcites →https://doi.org/10.1186/1471-2164-15-500openalex-snapshot
Genome sequencing of two Neorhizobium galegae strains reveals a noeT gene responsible for the unusual acetylation of the nodulation factors
inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
inferredcites →https://doi.org/10.1186/gb-2011-12-10-r106openalex-snapshot
Adaptation of Rhizobium leguminosarumto pea, alfalfa and sugar beet rhizospheres investigated by comparative transcriptomics
inferredcites →https://doi.org/10.1371/journal.pgen.1001284openalex-snapshot
Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes
inferredcites →https://doi.org/10.1371/journal.pgen.1004742openalex-snapshot
Examination of Prokaryotic Multipartite Genome Evolution through Experimental Genome Reduction
inferredcites →https://doi.org/10.4014/jmb.0906.06042openalex-snapshot
Movement of Rhizobia inside Tobacco and Lifestyle Alternation from Endophytes to Free-living Rhizobia on leaves
inferredcites →https://doi.org/10.4137/ebo.s39070openalex-snapshot
Estimating Divergence Times and Substitution Rates in Rhizobia
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Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1016/j.cels.2023.09.002openalex-snapshot
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Guidelines for the description of rhizobial symbiovars
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Updated taxonomy of the family Rhizobiaceae with proposals for 8 novel genera and 32 novel combinations
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