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Insights into the Ecological Diversification of the Hymenochaetales based on Comparative Genomics and Phylogenomics With an Emphasis onColtricia
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Stable isotope analyses reveal previously unknown trophic mode diversity in the Hymenochaetales
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ImageGP: An easy‐to‐use data visualization web server for scientific researchers
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Predicting Subcellular Localization of Proteins Based on their N-terminal Amino Acid Sequence
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Ectomycorrhizas of Coltricia and Coltriciella (Hymenochaetales, Basidiomycota) on Caesalpiniaceae, Dipterocarpaceae and Myrtaceae in Seychelles
inferredcites →https://doi.org/10.1007/s11557-022-01792-2openalex-snapshot
Three new Coltricia (Hymenochaetaceae, Basidiomycota) species from China based on morphological characters and molecular evidence
inferredcites →https://doi.org/10.1007/s13225-010-0066-9openalex-snapshot
Hymenochaetaceae (Basidiomycota) in China
inferredcites →https://doi.org/10.1007/s13225-019-00432-7openalex-snapshot
Resource diversity of Chinese macrofungi: edible, medicinal and poisonous species
inferredcites →https://doi.org/10.1007/s13225-019-00435-4openalex-snapshot
Notes, outline and divergence times of Basidiomycota
inferredcites →https://doi.org/10.1007/s13225-021-00496-4openalex-snapshot
Global diversity and systematics of Hymenochaetaceae with poroid hymenophore
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A Secreted Effector Protein of Laccaria bicolor Is Required for Symbiosis Development
inferredcites →https://doi.org/10.1016/j.fbr.2013.09.001openalex-snapshot
Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground
inferredcites →https://doi.org/10.1016/j.fecs.2022.100051openalex-snapshot
A comparison of polypore funga and species composition in forest ecosystems of China, North America, and Europe
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Genome comparison and transcriptome analysis of the invasive brown root rot pathogen, Phellinus noxius, from different geographic regions reveals potential enzymes associated with degradation of different wood substrates
inferredcites →https://doi.org/10.1016/j.jbiotec.2015.06.426openalex-snapshot
Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation
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Evolution and biogeography of gymnosperms
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Gene Ontology: tool for the unification of biology
inferredcites →https://doi.org/10.1038/nature06591openalex-snapshot
Terrestrial ecosystem carbon dynamics and climate feedbacks
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Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists
inferredcites →https://doi.org/10.1038/nmeth.3176openalex-snapshot
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Climatic controls of decomposition drive the global biogeography of forest-tree symbioses
inferredcites →https://doi.org/10.1038/s41587-019-0036-zopenalex-snapshot
SignalP 5.0 improves signal peptide predictions using deep neural networks
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Chapter 8. Biological Lignin Degradation
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Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
inferredcites →https://doi.org/10.1073/pnas.1817822116openalex-snapshot
Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi
inferredcites →https://doi.org/10.1073/pnas.1922539117openalex-snapshot
Fruiting body form, not nutritional mode, is the major driver of diversification in mushroom-forming fungi
inferredcites →https://doi.org/10.1073/pnas.2023738118openalex-snapshot
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inferredcites →https://doi.org/10.1080/10618600.1996.10474713openalex-snapshot
R: A Language for Data Analysis and Graphics
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inferredcites →https://doi.org/10.1080/23802359.2022.2078677openalex-snapshot
The complete mitochondrial genome of Porodaedalea mongolica (Hymenochaetaceae, Basidiomycota)
inferredcites →https://doi.org/10.1093/bioinformatics/19.2.301openalex-snapshot
r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot
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inferredcites →https://doi.org/10.1093/bioinformatics/btr011openalex-snapshot
A fast, lock-free approach for efficient parallel counting of occurrences of k -mers
inferredcites →https://doi.org/10.1093/bioinformatics/btt086openalex-snapshot
QUAST: quality assessment tool for genome assemblies
inferredcites →https://doi.org/10.1093/bioinformatics/btt476openalex-snapshot
The MaSuRCA genome assembler
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/bioinformatics/btx153openalex-snapshot
GenomeScope: fast reference-free genome profiling from short reads
inferredcites →https://doi.org/10.1093/gbe/evz181openalex-snapshot
Evidence of Extensive Intraspecific Noncoding Reshuffling in a 169-kb Mitochondrial Genome of a Basidiomycetous Fungus
inferredcites →https://doi.org/10.1093/molbev/msaa301openalex-snapshot
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msy179openalex-snapshot
Rapid Divergence of Genome Architectures Following the Origin of an Ectomycorrhizal Symbiosis in the Genus Amanita
inferredcites →https://doi.org/10.1093/molbev/msz189openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gkg015openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gkn663openalex-snapshot
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics
inferredcites →https://doi.org/10.1093/nar/gku1223openalex-snapshot
Expanded microbial genome coverage and improved protein family annotation in the COG database
inferredcites →https://doi.org/10.1093/nar/gkv1070openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gky1085openalex-snapshot
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inferredcites →https://doi.org/10.1093/nar/gky995openalex-snapshot
The Pfam protein families database in 2019
inferredcites →https://doi.org/10.1105/tpc.18.00676openalex-snapshot
The Ectomycorrhizal Fungus Laccaria bicolor Produces Lipochitooligosaccharides and Uses the Common Symbiosis Pathway to Colonize Populus Roots
inferredcites →https://doi.org/10.1111/1462-2920.14727openalex-snapshot
Laccaria bicolor MiSSP8 is a small‐secreted protein decisive for the establishment of the ectomycorrhizal symbiosis
inferredcites →https://doi.org/10.1111/brv.12510openalex-snapshot
Fungal evolution: major ecological adaptations and evolutionary transitions
inferredcites →https://doi.org/10.1111/j.1365-2486.2009.01916.xopenalex-snapshot
Plant traits and wood fates across the globe: rotted, burned, or consumed?
inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03794.xopenalex-snapshot
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inferredcites →https://doi.org/10.1111/jse.12538openalex-snapshot
Development trends in taxonomy, with special reference to fungi
inferredcites →https://doi.org/10.1111/mec.14359openalex-snapshot
Comparative and population genomic landscape of Phellinus noxius : A hypervariable fungus causing root rot in trees
inferredcites →https://doi.org/10.1111/mec.16369openalex-snapshot
Population genomics of a forest fungus reveals high gene flow and climate adaptation signatures
inferredcites →https://doi.org/10.1111/nph.15281openalex-snapshot
The Hebeloma cylindrosporum HcPT2 Pi transporter plays a key role in ectomycorrhizal symbiosis
inferredcites →https://doi.org/10.1111/nph.17160openalex-snapshot
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
inferredcites →https://doi.org/10.1111/nph.17858openalex-snapshot
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales
inferredcites →https://doi.org/10.1111/nph.18365openalex-snapshot
Biogeographic history of a large clade of ectomycorrhizal fungi, the Russulaceae, in the Neotropics and adjacent regions
inferredcites →https://doi.org/10.1126/science.1153918openalex-snapshot
Extending Genomics to Natural Communities and Ecosystems
inferredcites →https://doi.org/10.1126/science.1221748openalex-snapshot
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes
inferredcites →https://doi.org/10.1128/microbiolspec.funk-0052-2016openalex-snapshot
Fungal Diversity Revisited: 2.2 to 3.8 Million Species
inferredcites →https://doi.org/10.1139/b84-132openalex-snapshot
Ectomycorrhizal associations in jack pine stands in northeastern Alberta
inferredcites →https://doi.org/10.1146/annurev-ecolsys-012021-114902openalex-snapshot
Evolution of the Mode of Nutrition in Symbiotic and Saprotrophic Fungi in Forest Ecosystems
inferredcites →https://doi.org/10.1186/s12862-018-1229-7openalex-snapshot
Evolutionary dynamics of host specialization in wood-decay fungi
inferredcites →https://doi.org/10.1186/s12864-022-08511-xopenalex-snapshot
Genome sequencing of Inonotus obliquus reveals insights into candidate genes involved in secondary metabolite biosynthesis
inferredcites →https://doi.org/10.1186/s13059-019-1832-yopenalex-snapshot
OrthoFinder: phylogenetic orthology inference for comparative genomics
inferredcites →https://doi.org/10.1186/s13059-019-1905-yopenalex-snapshot
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
inferredcites →https://doi.org/10.32614/rj-2016-060openalex-snapshot
ggfortify: Unified Interface to Visualize Statistical Results of Popular R Packages
inferredcites →https://doi.org/10.3389/fmicb.2015.01278openalex-snapshot
Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins
inferredcites →https://doi.org/10.3389/fmicb.2022.907961openalex-snapshot
Phylogeny, Divergence Time Estimation and Biogeography of the Genus Onnia (Basidiomycota, Hymenochaetaceae)
inferredcites →https://doi.org/10.3390/jof7100787openalex-snapshot
The First Whole Genome Sequencing of Sanghuangporus sanghuang Provides Insights into Its Medicinal Application and Evolution
inferredcites →https://doi.org/10.3390/jof8030311openalex-snapshot
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species
inferredcites →https://doi.org/10.3732/ajb.1200416openalex-snapshot
Land plant evolutionary timeline: Gene effects are secondary to fossil constraints in relaxed clock estimation of age and substitution rates
inferredcites →https://doi.org/10.3897/mycokeys.38.28497openalex-snapshot
Multilocus phylogeny reveals taxonomic misidentification of the Schizopora paradoxa (KUC8140) representative genome
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Sparassis fanjingshanensis, a new species of Sparassidaceae from Fanjingshan National Nature Reserve in China
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Coltricia aridicola sp. nov. derived from the Coltricia perennis complex (Hymenochaetaceae) confirmed by molecular phylogeny
inferred← citeshttps://doi.org/10.11646/phytotaxa.661.3.5zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.3897/mycokeys.115.142433zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.3897/mycokeys.117.146236zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.3897/mycokeys.127.171179zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.3897/mycokeys.127.173104zenodo-depositor-declared
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inferred← citeshttps://doi.org/10.1007/s13225-025-00556-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.fecs.2024.100200openalex-snapshot
Polypore funga and species diversity in tropical forest ecosystems of Africa, America and Asia, and a comparison with temperate and boreal regions of the Northern Hemisphere
inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108286openalex-snapshot
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inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108632openalex-snapshot
Genomic insights into the transition from saprophytic to parasitic lifestyles in Hymenochaetales
inferred← citeshttps://doi.org/10.1038/s41598-025-91672-yopenalex-snapshot
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inferred← citeshttps://doi.org/10.1038/s44358-025-00107-zopenalex-snapshot
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inferred← citeshttps://doi.org/10.1080/00275514.2025.2559555openalex-snapshot
Two new species of Coltricia (Hymenochaetales, Basidiomycota) from West Africa based on morphological and molecular phylogenetic evidence
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Molecular and metabolites characterisation of Inonotus rickii: a medicinal mushroom from Western Ghats of India and its biological activities
inferred← citeshttps://doi.org/10.1080/21501203.2024.2391527openalex-snapshot
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Genome analysis of the esca-associated Basidiomycetes Fomitiporia mediterranea , Fomitiporia polymorpha , Inonotus vitis , and Tropicoporus texanus reveals virulence factor repertoires characteristic of white-rot fungi
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Morphological and molecular identification for four new species of wood-inhabiting Trechispora (Basidiomycota, Hydnodontaceae) from Yunnan-Guizhou Plateau, East Asia
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Phylogenetic and Taxonomic Analyses of Five New Wood-Inhabiting Fungi of Botryobasidium, Coltricia and Coltriciella (Basidiomycota) from China
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