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An Exploration into Fern Genome Space
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/tax.563001openalex-snapshot
Towards a phylogenetic nomenclature of Tracheophyta
inferredcites →https://doi.org/10.1006/anbo.1998.0730openalex-snapshot
Plant Genome Size Estimation by Flow Cytometry: Inter-laboratory Comparison*1
inferredcites →https://doi.org/10.1006/anbo.2000.1339openalex-snapshot
Nuclear DNA Amounts in Pteridophytes
inferredcites →https://doi.org/10.1007/bf00318471openalex-snapshot
Large size and complex structure of mitochondrial DNA in two nonflowering land plants
inferredcites →https://doi.org/10.1007/bf00939726openalex-snapshot
Assessment of gene copy number in the homosporous fernsCeratopteris thalictroides andC. richardii (Parkeriaceae) by restriction fragment length polymorphisms
inferredcites →https://doi.org/10.1007/s10577-011-9228-1openalex-snapshot
DNA content variation in monilophytes and lycophytes: large genomes that are not endopolyploid
inferredcites →https://doi.org/10.1016/j.pbi.2007.01.004openalex-snapshot
How many genes are there in plants (… and why are they there)?
inferredcites →https://doi.org/10.1016/j.pbi.2015.02.002openalex-snapshot
Progress, challenges and the future of crop genomes
inferredcites →https://doi.org/10.1016/s1360-1385(02)02375-0openalex-snapshot
Deciding among green plants for whole genome studies
inferredcites →https://doi.org/10.1017/cbo9780511541827.008openalex-snapshot
Evolution of the nuclear genome of ferns and lycophytes
inferredcites →https://doi.org/10.1023/a:1010233608680openalex-snapshot
Mirrored Genome Size Distributions in Monocot and Dicot Plants
inferredcites →https://doi.org/10.1038/35054555openalex-snapshot
Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants
inferredcites →https://doi.org/10.1038/nature02361openalex-snapshot
Ferns diversified in the shadow of angiosperms
inferredcites →https://doi.org/10.1038/nature12132openalex-snapshot
Architecture and evolution of a minute plant genome
inferredcites →https://doi.org/10.1038/nature12211openalex-snapshot
The Norway spruce genome sequence and conifer genome evolution
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1073/pnas.0811575106openalex-snapshot
The frequency of polyploid speciation in vascular plants
inferredcites →https://doi.org/10.1073/pnas.87.1.195openalex-snapshot
Defective chlorophyll a/b-binding protein genes in the genome of a homosporous fern.
inferredcites →https://doi.org/10.1073/pnas.88.5.1602openalex-snapshot
Gene silencing in a polyploid homosporous fern: paleopolyploidy revisited.
inferredcites →https://doi.org/10.1093/aob/mcf167openalex-snapshot
Nuclear DNA C-values in 30 Species Double the Familial Representation in Pteridophytes
inferredcites →https://doi.org/10.1093/aob/mci283openalex-snapshot
First Nuclear DNA C-values for 18 Eudicot Families
inferredcites →https://doi.org/10.1093/bfgp/elu005openalex-snapshot
Plant genome size variation: bloating and purging DNA
inferredcites →https://doi.org/10.1093/bioinformatics/btt054openalex-snapshot
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1101/gr.1784803openalex-snapshot
Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals
inferredcites →https://doi.org/10.1101/gr.2289704openalex-snapshot
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
inferredcites →https://doi.org/10.1101/gr.4100405openalex-snapshot
Differential methylation of genes and repeats in land plants
inferredcites →https://doi.org/10.1105/tpc.104.027706openalex-snapshot
The Rice Nuclear Genome Continuously Integrates, Shuffles, and Eliminates the Chloroplast Genome to Cause Chloroplast–Nuclear DNA Flux
inferredcites →https://doi.org/10.1111/j.1095-8312.2004.00349.xopenalex-snapshot
Genome downsizing in polyploid plants
inferredcites →https://doi.org/10.1111/j.1095-8339.1985.tb00380.xopenalex-snapshot
Karyotypes and nuclear DNA amounts in Polypodium L. (Polypodiaceae)
inferredcites →https://doi.org/10.1111/j.1469-8137.2012.04105.xopenalex-snapshot
Ecological and genetic factors linked to contrasting genome dynamics in seed plants
inferredcites →https://doi.org/10.1111/nph.13330openalex-snapshot
Are the genomes of royal ferns really frozen in time? Evidence for coinciding genome stability and limited evolvability in the royal ferns
inferredcites →https://doi.org/10.1126/science.1241089openalex-snapshot
The Amborella Genome and the Evolution of Flowering Plants
inferredcites →https://doi.org/10.1126/science.153.3733.305openalex-snapshot
Evolutionary Significance of Polyploidy in the Pteridophyta
inferredcites →https://doi.org/10.1139/b99-093openalex-snapshot
Multiple ribosomal RNA gene loci in the genome of the homosporous fernCeratopteris richardii
inferredcites →https://doi.org/10.1139/cjb-77-8-1199openalex-snapshot
Multiple ribosomal RNA gene loci in the genome of the homosporous fern Ceratopteris richardii
inferredcites →https://doi.org/10.1139/g94-081openalex-snapshot
Active maize genes are unmodified and flanked by diverse classes of modified, highly repetitive DNA
inferredcites →https://doi.org/10.1186/1471-2164-10-382openalex-snapshot
What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)
inferredcites →https://doi.org/10.1186/2047-217x-3-16openalex-snapshot
Crowdfunding the Azolla fern genome project: a grassroots approach
inferredcites →https://doi.org/10.1371/journal.pone.0085024openalex-snapshot
An Extensive Evaluation of Read Trimming Effects on Illumina NGS Data Analysis
inferredcites →https://doi.org/10.14806/ej.17.1.200openalex-snapshot
Cutadapt removes adapter sequences from high-throughput sequencing reads
inferredcites →https://doi.org/10.1525/bio.2010.60.3.4openalex-snapshot
Unfurling Fern Biology in the Genomics Age
inferredcites →https://doi.org/10.1534/genetics.106.055624openalex-snapshot
Genetic Map-Based Analysis of Genome Structure in the Homosporous Fern Ceratopteris richardii
inferredcites →https://doi.org/10.2174/1874294700801010015openalex-snapshot
Sequencing of a Segment of a Monilophyte Species Mitochondrial Genome Reveals Features Highly Similar to those of Seed Plant mtDNAs
inferredcites →https://doi.org/10.2307/25065865openalex-snapshot
In defence of a conifer taxonomy which recognises evolution
inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot
R: A Language and Environment for Statistical Computing
inferredcites →https://doi.org/10.3732/ajb.91.10.1582openalex-snapshot
Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences
inferredcites →https://doi.org/10.3732/ajb.92.9.1535openalex-snapshot
Nuclear DNA, chloroplast DNA, and ploidy analysis clarified biological complexity of the Vandenboschia radicans complex (Hymenophyllaceae) in Japan and adjacent areas
inferredcites →https://doi.org/10.3732/apps.1400042openalex-snapshot
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.11646/phytotaxa.625.3.1zenodo-depositor-declared
The third opinion on fern phylogenetics with novel insights into their mitogenome evolution
inferred← citeshttps://doi.org/10.1002/ajb2.1152openalex-snapshot
Order‐level fern plastome phylogenomics: new insights from Hymenophyllales
inferred← citeshttps://doi.org/10.1002/ajb2.16332openalex-snapshot
An adventurous journey toward and away from fern apomixis: Insights from genome size and spore abortion patterns
inferred← citeshttps://doi.org/10.1002/ajb2.70248openalex-snapshot
Genomics is modifying our concepts of evolution in homosporous and heterosporous vascular plants
inferred← citeshttps://doi.org/10.1007/978-3-319-75103-0_2openalex-snapshot
Azolla: A Model System for Symbiotic Nitrogen Fixation and Evolutionary Developmental Biology
inferred← citeshttps://doi.org/10.1007/978-3-319-75103-0_4openalex-snapshot
Biotechnology in Clone Gametophytes: Future Perspectives in Homosporous Ferns
inferred← citeshttps://doi.org/10.1007/978-981-16-6170-9_5openalex-snapshot
Molecular Markers in Pteridophytes
inferred← citeshttps://doi.org/10.1007/s00300-017-2205-1openalex-snapshot
Characterization of some satellite DNA families in Deschampsia antarctica (Poaceae)
inferred← citeshttps://doi.org/10.1007/s00425-021-03598-0openalex-snapshot
Large vs small genomes in Passiflora: the influence of the mobilome and the satellitome
inferred← citeshttps://doi.org/10.1007/s00497-023-00476-5openalex-snapshot
Interploidy gene flow via a ‘pentaploid bridge’ and ploidy reduction in Cystopteris fragilis fern complex (Cystopteridaceae: Polypodiales)
inferred← citeshttps://doi.org/10.1007/s10528-025-11248-3openalex-snapshot
The Complete Chloroplast Genome of Tree Fern Cyathea delgadii and Its Comparison to Other Cyatheales
inferred← citeshttps://doi.org/10.1007/s11103-023-01366-0openalex-snapshot
The first homosporous lycophyte genome revealed the association between the recent dynamic accumulation of LTR-RTs and genome size variation
inferred← citeshttps://doi.org/10.1007/s12042-026-09460-5openalex-snapshot
Molecular Adaptation and Genetic Diversity of Ferns from Fifa Mountains (Jazan, Saudi Arabia): Insights from Coding-SNPs
inferred← citeshttps://doi.org/10.1016/bs.abr.2016.02.001openalex-snapshot
Evolutionary Genomics of Ferns and Lycophytes
inferred← citeshttps://doi.org/10.1016/j.cell.2016.08.031openalex-snapshot
Field Guide to Plant Model Systems
inferred← citeshttps://doi.org/10.1016/j.flora.2020.151658openalex-snapshot
Leaf development in some ferns with variable dissection patterns (Dryopteridaceae and Lomariopsidaceae)
inferred← citeshttps://doi.org/10.1016/j.mito.2020.03.008openalex-snapshot
Mitochondria in parasitic plants
inferred← citeshttps://doi.org/10.1016/j.plgene.2017.07.006openalex-snapshot
Differential expression patterns of MIKCC-type MADS-box genes in the endangered fern Vandenboschia speciosa
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.07.001openalex-snapshot
Plastome organization, genome-based phylogeny and evolution of plastid genes in Podophylloideae (Berberidaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2026.108691openalex-snapshot
A phylogenomic dive into giant genomes: unravelling the evolutionary history of Tmesipteris (Psilotales)
inferred← citeshttps://doi.org/10.1017/s1479262116000290openalex-snapshot
Pteridophytes: evolutionary boon as medicinal plants
inferred← citeshttps://doi.org/10.1038/s41477-021-00888-zopenalex-snapshot
Charting the genomic landscape of seed-free plants
inferred← citeshttps://doi.org/10.1038/s41477-022-01222-xopenalex-snapshot
The genome of homosporous maidenhair fern sheds light on the euphyllophyte evolution and defences
inferred← citeshttps://doi.org/10.1038/s41598-017-16399-xopenalex-snapshot
Tracheophyte genomes keep track of the deep evolution of the Caulimoviridae
inferred← citeshttps://doi.org/10.1038/s41598-019-53968-8openalex-snapshot
The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly
inferred← citeshttps://doi.org/10.1038/s42003-025-07749-xopenalex-snapshot
Comparative analysis using a chromosome-scale genome assembly for Funaria hygrometrica suggests greater collinearity in mosses than in seed plants
inferred← citeshttps://doi.org/10.1038/srep30444openalex-snapshot
The phylogeny of C/S1 bZIP transcription factors reveals a shared algal ancestry and the pre-angiosperm translational regulation of S1 transcripts
inferred← citeshttps://doi.org/10.1086/698482openalex-snapshot
Evolutionary Conflict between Mobile DNA and Host Genomes
inferred← citeshttps://doi.org/10.1086/713442openalex-snapshot
From Genomes to Populations: A Meta-analysis and Review of Fern Population Genetics
inferred← citeshttps://doi.org/10.1086/724824openalex-snapshot
Life without a Sporophyte: The Origin and Genomic Consequences of Asexual Reproduction in a Gametophyte-Only Fern
inferred← citeshttps://doi.org/10.1093/aob/mcab094openalex-snapshot
Evolution of genome space occupation in ferns: linking genome diversity and species richness
inferred← citeshttps://doi.org/10.1093/aob/mcy192openalex-snapshot
Characterization of the satellitome in lower vascular plants: the case of the endangered fern Vandenboschia speciosa
inferred← citeshttps://doi.org/10.1093/botlinnean/box003openalex-snapshot
Genomic gigantism in the whisk-fern family (Psilotaceae): Tmesipteris obliqua challenges record holder Paris japonica
inferred← citeshttps://doi.org/10.1093/botlinnean/boz020openalex-snapshot
Dynamism in plastome structure observed across the phylogenetic tree of ferns
inferred← citeshttps://doi.org/10.1093/gbe/evac127openalex-snapshot
Genomic Insights into Genetic Diploidization in the Homosporous Fern Adiantum nelumboides
inferred← citeshttps://doi.org/10.1093/gbe/evv256openalex-snapshot
Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic PlantHydnora visseri(Hydnoraceae)
inferred← citeshttps://doi.org/10.1093/gbe/evw091openalex-snapshot
The Small Nuclear Genomes ofSelaginellaAre Associated with a Low Rate of Genome Size Evolution
inferred← citeshttps://doi.org/10.1093/gbe/evw167openalex-snapshot
Genes Translocated into the Plastid Inverted Repeat Show Decelerated Substitution Rates and Elevated GC Content
inferred← citeshttps://doi.org/10.1093/gbe/evy189openalex-snapshot
Mobile Elements Shape Plastome Evolution in Ferns
inferred← citeshttps://doi.org/10.1101/170415openalex-snapshot
Hidden diversity and macroevolutionary mode of Caulimoviridae uncovered by euphyllophyte paleoviruses
inferred← citeshttps://doi.org/10.1101/2021.03.23.436569openalex-snapshot
The fern CYPome: Fern-specific cytochrome P450 family involved in convergent evolution of chemical defense
inferred← citeshttps://doi.org/10.1101/2022.12.06.519249openalex-snapshot
The first homosporous lycophyte genome revealed the association between the dynamic accumulation of LTR-RTs and genome size variation
inferred← citeshttps://doi.org/10.1111/jse.12174openalex-snapshot
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches
inferred← citeshttps://doi.org/10.1111/jse.12218openalex-snapshot
Elevational diversity patterns as an example for evolutionary and ecological dynamics in ferns and lycophytes
inferred← citeshttps://doi.org/10.1111/jse.12226openalex-snapshot
Genetic and genomic aspects of hybridization in ferns
inferred← citeshttps://doi.org/10.1111/jse.12228openalex-snapshot
A current perspective on apomixis in ferns
inferred← citeshttps://doi.org/10.1111/jse.12271openalex-snapshot
Neo‐ and Paleopolyploidy contribute to the species diversity of Asplenium—the most species‐rich genus of ferns
inferred← citeshttps://doi.org/10.1111/jse.12525openalex-snapshot
Polyploidy does not control all: Lineage‐specific average chromosome length constrains genome size evolution in ferns
inferred← citeshttps://doi.org/10.1111/mec.17757openalex-snapshot
The Role of Meiotic Drive in Chromosome Number Disparity Between Heterosporous and Homosporous Plants
inferred← citeshttps://doi.org/10.1111/nph.13833openalex-snapshot
Genome evolution of ferns: evidence for relative stasis of genome size across the fern phylogeny
inferred← citeshttps://doi.org/10.1111/nph.14135openalex-snapshot
Complete mitochondrial genomes from the ferns Ophioglossum californicum and Psilotum nudum are highly repetitive with the largest organellar introns
inferred← citeshttps://doi.org/10.1111/nph.14464openalex-snapshot
Why we need more non‐seed plant models
inferred← citeshttps://doi.org/10.1111/tpj.13479openalex-snapshot
A fern AINTEGUMENTA gene mirrors BABY BOOM in promoting apogamy in Ceratopteris richardii
inferred← citeshttps://doi.org/10.1111/tpj.13648openalex-snapshot
The ALDH 21 gene found in lower plants and some vascular plants codes for a NADP +‐dependent succinic semialdehyde dehydrogenase
inferred← citeshttps://doi.org/10.1128/jvi.02043-17openalex-snapshot
Euphyllophyte Paleoviruses Illuminate Hidden Diversity and Macroevolutionary Mode of Caulimoviridae
inferred← citeshttps://doi.org/10.1139/gen-2021-0022openalex-snapshot
Transposable element landscapes illuminate past evolutionary events in the endangered fern Vandenboschia speciosa
inferred← citeshttps://doi.org/10.1186/s12862-016-0707-zopenalex-snapshot
Reverse U-to-C editing exceeds C-to-U RNA editing in some ferns – a monilophyte-wide comparison of chloroplast and mitochondrial RNA editing suggests independent evolution of the two processes in both organelles
inferred← citeshttps://doi.org/10.1186/s12864-016-3034-2openalex-snapshot
Transcriptome sequencing reveals genome-wide variation in molecular evolutionary rate among ferns
inferred← citeshttps://doi.org/10.1186/s12864-026-12522-3openalex-snapshot
Organellar genome evolution in Camellia tianeensis (Theaceae): comparative insights into RNA editing, codon usage, and DNA transfer between chloroplast and mitochondrion
inferred← citeshttps://doi.org/10.1186/s12870-017-1195-zopenalex-snapshot
Comparative analysis of inverted repeats of polypod fern (Polypodiales) plastomes reveals two hypervariable regions
inferred← citeshttps://doi.org/10.1186/s12870-025-07328-6openalex-snapshot
Do duplication-inducing elements ‘cooperate’ with genes in evolutionary arms races? A case study on cereal crop pathogenesis
inferred← citeshttps://doi.org/10.1186/s13742-016-0154-1openalex-snapshot
Draft genome of the living fossil Ginkgo biloba
inferred← citeshttps://doi.org/10.1371/journal.pone.0144701openalex-snapshot
Congruent Deep Relationships in the Grape Family (Vitaceae) Based on Sequences of Chloroplast Genomes and Mitochondrial Genes via Genome Skimming
inferred← citeshttps://doi.org/10.1371/journal.pone.0145031openalex-snapshot
Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing
inferred← citeshttps://doi.org/10.1371/journal.pone.0177573openalex-snapshot
Sequencing of small RNAs of the fern Pleopeltis minima (Polypodiaceae) offers insight into the evolution of the microrna repertoire in land plants
inferred← citeshttps://doi.org/10.1640/0002-8444-109.3.177openalex-snapshot
Current Status and Future Prospects for Fern and Lycophyte Genomics: Introduction to an American Fern Journal Special Issue
inferred← citeshttps://doi.org/10.1640/0002-8444-109.3.183openalex-snapshot
Ferns with Benefits: Incorporating Ceratopteris into the Genomics Era
inferred← citeshttps://doi.org/10.1640/0002-8444-109.3.192openalex-snapshot
Ferns: The Final Frond-tier in Plant Model Systems
inferred← citeshttps://doi.org/10.1640/0002-8444-109.3.212openalex-snapshot
A Roadmap for Fern Genome Sequencing
inferred← citeshttps://doi.org/10.1640/0002-8444-109.3.248openalex-snapshot
Nuclear Genome Size is Positively Correlated with Median LTR-RT Insertion Time in Fern and Lycophyte Genomes
inferred← citeshttps://doi.org/10.3120/0024-9637-70.3.126openalex-snapshot
GENOME SKIMMING OF HERBARIUM SPECIMENS REVEALS PHYLOGEOGRAPHIC TRENDS AMONG POPULATIONS OF AN ESTUARINE SEABLITE (CHENOPODIACEAE: SUAEDA ESTEROA)
inferred← citeshttps://doi.org/10.32942/x2rd0kopenalex-snapshot
Meiotic drive and genome evolution in vascular land plants
inferred← citeshttps://doi.org/10.3389/fpls.2018.01410openalex-snapshot
Getting to the Roots: A Developmental Genetic View of Root Anatomy and Function From Arabidopsis to Lycophytes
inferred← citeshttps://doi.org/10.3389/fpls.2020.00176openalex-snapshot
Performance of Mapping Approaches for Whole-Genome Bisulfite Sequencing Data in Crop Plants
inferred← citeshttps://doi.org/10.3389/fpls.2022.807302openalex-snapshot
Why Do Heterosporous Plants Have So Few Chromosomes?
inferred← citeshttps://doi.org/10.3389/fpls.2022.924660openalex-snapshot
Transcriptional analysis of Ceratopteris richardii young sporophyte reveals conservation of stem cell factors in the root apical meristem
inferred← citeshttps://doi.org/10.3390/genes12071017openalex-snapshot
De Novo Sporophyte Transcriptome Assembly and Functional Annotation in the Endangered Fern Species Vandenboschia speciosa (Willd.) G. Kunkel
inferred← citeshttps://doi.org/10.3390/genes8100275openalex-snapshot
Identification and Characterization of TALE Homeobox Genes in the Endangered Fern Vandenboschia speciosa
inferred← citeshttps://doi.org/10.3390/ijms24032708openalex-snapshot
Giant Fern Genomes Show Complex Evolution Patterns: A Comparative Analysis in Two Species of Tmesipteris (Psilotaceae)
inferred← citeshttps://doi.org/10.3732/ajb.1700135openalex-snapshot
Plastome sequences of an ancient fern lineage reveal remarkable changes in gene content and architecture
inferred← citeshttps://doi.org/10.5209/bocm.74315openalex-snapshot
Contribución al conocimiento de las esporas de licófitos y pteridófitos en la atmósfera de la península Ibérica
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