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Genomic Signatures of Speciation in Sympatric and Allopatric Hawaiian Picture-WingedDrosophila

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferreduses_data →https://doi.org/10.5281/zenodo.10723540zenodo-depositor-declared

inferredcites →https://doi.org/10.1007/bf01997233openalex-snapshot

Behavioral reproductive isolation inDrosophila silvestris, D. heteroneura, and their F1 hybrids (Diptera: Drosophilidae)

inferredcites →https://doi.org/10.1007/s10519-005-3221-4openalex-snapshot

Sexual Selection and Speciation in Hawaiian Drosophila

inferredcites →https://doi.org/10.1007/s10519-010-9364-yopenalex-snapshot

Evolution of Cuticular Hydrocarbons of Hawaiian Drosophilidae

inferredcites →https://doi.org/10.1007/s10905-013-9404-6openalex-snapshot

Sexual Selection, Epistasis and Species Boundaries in Sympatric Hawaiian Picture-winged Drosophila

inferredcites →https://doi.org/10.1016/j.tig.2012.03.009openalex-snapshot

The genomics of speciation-with-gene-flow

inferredcites →https://doi.org/10.1016/j.ympev.2005.03.008openalex-snapshot

Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila

inferredcites →https://doi.org/10.1016/j.ympev.2010.11.022openalex-snapshot

Phylogenetic and ecological relationships of the Hawaiian Drosophila inferred by mitochondrial DNA analysis

inferredcites →https://doi.org/10.1016/j.ympev.2015.06.014openalex-snapshot

Rapid adaptive radiation and host plant conservation in the Hawaiian picture wing Drosophila (Diptera: Drosophilidae)

inferredcites →https://doi.org/10.1038/351652a0openalex-snapshot

Adaptive protein evolution at the Adh locus in Drosophila

inferredcites →https://doi.org/10.1038/375674a0openalex-snapshot

Speciation driven by natural selection in Drosophila

inferredcites →https://doi.org/10.1038/990087openalex-snapshot

Sympatric speciation by sexual selection

inferredcites →https://doi.org/10.1038/hdy.1982.2openalex-snapshot

Evolution of drosophila on the newer hawaiian volcanoes

inferredcites →https://doi.org/10.1038/hdy.2016.31openalex-snapshot

Hybrid sterility and evolution in Hawaiian Drosophila: differential gene and allele-specific expression analysis of backcross males

inferredcites →https://doi.org/10.1038/msb.2011.75openalex-snapshot

Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega

inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot

A framework for variation discovery and genotyping using next-generation DNA sequencing data

inferredcites →https://doi.org/10.1038/nprot.2008.211openalex-snapshot

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

inferredcites →https://doi.org/10.1038/nrg3644openalex-snapshot

Genomics and the origin of species

inferredcites →https://doi.org/10.1046/j.1365-2540.1998.00317.xopenalex-snapshot

Inheritance of behavioural differences between two interfertile, sympatric species, Drosophila silvestris and D. heteroneura

inferredcites →https://doi.org/10.1073/pnas.71.3.901openalex-snapshot

Ethological Isolation Among Three Species of the planitibia Subgroup of Hawaiian Drosophila

inferredcites →https://doi.org/10.1073/pnas.81.22.7146openalex-snapshot

Chromosomal mapping of a middle-repetitive DNA sequence in a cluster of five species of Hawaiian Drosophila.

inferredcites →https://doi.org/10.1073/pnas.83.18.6902openalex-snapshot

Discordance of nuclear and mitochondrial DNA phylogenies in Hawaiian Drosophila.

inferredcites →https://doi.org/10.1073/pnas.90.12.5813openalex-snapshot

Change in the signal-response sequence responsible for asymmetric isolation between Drosophila planitibia and Drosophila silvestris.

inferredcites →https://doi.org/10.1086/283221openalex-snapshot

Natural Hybridization between a Sympatric Pair of Hawaiian Drosophila

inferredcites →https://doi.org/10.1089/cmb.2012.0021openalex-snapshot

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

inferredcites →https://doi.org/10.1093/bioinformatics/btm071openalex-snapshot

CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes

inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot

Fast and accurate short read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot

The Sequence Alignment/Map format and SAMtools

inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot

Fast and accurate long-read alignment with Burrows–Wheeler transform

inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot

Scaffolding pre-assembled contigs using SSPACE

inferredcites →https://doi.org/10.1093/bioinformatics/btr589openalex-snapshot

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

inferredcites →https://doi.org/10.1093/bioinformatics/btt702openalex-snapshot

NextClip: an analysis and read preparation tool for Nextera Long Mate Pair libraries

inferredcites →https://doi.org/10.1093/genetics/148.3.929openalex-snapshot

Likelihood Models for Detecting Positively Selected Amino Acid Sites and Applications to the HIV-1 Envelope Gene

inferredcites →https://doi.org/10.1093/molbev/msg236openalex-snapshot

Temporal Patterns of Fruit Fly (Drosophila) Evolution Revealed by Mutation Clocks

inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot

PAML 4: Phylogenetic Analysis by Maximum Likelihood

inferredcites →https://doi.org/10.1093/molbev/msq249openalex-snapshot

Estimation of the Neutrality Index

inferredcites →https://doi.org/10.1093/oxfordjournals.jhered.a023115openalex-snapshot

Sexual Selection: A Driver of Genetic Change in Hawaiian Drosophila

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040678openalex-snapshot

The molecular evolution of the alcohol dehydrogenase locus and the phylogeny of Hawaiian Drosophila.

inferredcites →https://doi.org/10.1098/rspb.2002.2175openalex-snapshot

How old is the Hawaiian biota? Geology and phylogeny suggest recent divergence

inferredcites →https://doi.org/10.1101/gr.089532.108openalex-snapshot

ABySS: A parallel assembler for short read sequence data

inferredcites →https://doi.org/10.1111/j.1558-5646.1976.tb00954.xopenalex-snapshot

ETHOLOGICAL ISOLATION AND PHYLOGENY IN THE PLANITIBIA SUBGROUP OF HAWAIIAN DROSOPHILA

inferredcites →https://doi.org/10.1111/j.1558-5646.1979.tb04730.xopenalex-snapshot

ON PREMATING ISOLATION BETWEEN TWO CLOSELY RELATED SPECIES OF HAWAIIAN DROSOPHILA

inferredcites →https://doi.org/10.1111/j.1558-5646.1989.tb04217.xopenalex-snapshot

NATURAL HYBRIDIZATION BETWEEN THE SYMPATRIC HAWAIIAN SPECIES DROSOPHILA SILVESTRIS AND DROSOPHILA HETERONEURA

inferredcites →https://doi.org/10.1111/j.1558-5646.1997.tb02412.xopenalex-snapshot

“PATTERNS OF SPECIATION INDROSOPHILA” REVISITED

inferredcites →https://doi.org/10.1146/annurev.es.07.110176.001523openalex-snapshot

Drosophila of Hawaii: Systematics and Ecological Genetics

inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

inferredcites →https://doi.org/10.1186/2047-217x-1-18openalex-snapshot

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

inferredcites →https://doi.org/10.1371/journal.pone.0011147openalex-snapshot

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

inferredcites →https://doi.org/10.1371/journal.pone.0015925openalex-snapshot

PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals

inferredcites →https://doi.org/10.2174/1875036201307010001openalex-snapshot

Comparison of Sequencing Utility Programs

inferredcites →https://doi.org/10.2307/2407800openalex-snapshot

On Premating Isolation Between Two Closely Related Species of Hawaiian Drosophila

inferredcites →https://doi.org/10.2307/2407814openalex-snapshot

Ethological Isolation and Phylogeny in the Planitibia Subgroup of Hawaiian Drosophila

inferredcites →https://doi.org/10.2307/2409174openalex-snapshot

Natural Hybridization between the Sympatric Hawaiian Species Drosophila silvestris and Drosophila heteroneura

inferredcites →https://doi.org/10.2307/2410984openalex-snapshot

"Patterns of Speciation in Drosophila" Revisited

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/bies.201700246openalex-snapshot

Hawaiian Drosophila as an Evolutionary Model Clade: Days of Future Past

inferred← citeshttps://doi.org/10.1002/evl3.220openalex-snapshot

Experimental evolution supports signatures of sexual selection in genomic divergence

inferred← citeshttps://doi.org/10.1002/jez.b.23129openalex-snapshot

The early embryonic transcriptome of a Hawaiian Drosophila picture‐wing fly shows evidence of altered gene expression and novel gene evolution

inferred← citeshttps://doi.org/10.1007/978-981-97-7098-4_2openalex-snapshot

Untapped Rice Genetic Resources and Pre-breeding in Genomics Era

inferred← citeshttps://doi.org/10.1007/s00239-017-9795-7openalex-snapshot

A Test for Gene Flow among Sympatric and Allopatric Hawaiian Picture-Winged Drosophila

inferred← citeshttps://doi.org/10.1016/b978-0-443-15750-9.00083-5openalex-snapshot

Speciation Genomics

inferred← citeshttps://doi.org/10.1016/j.cois.2018.11.002openalex-snapshot

Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster

inferred← citeshttps://doi.org/10.1016/j.ympev.2017.04.023openalex-snapshot

Positive diversifying selection is a pervasive adaptive force throughout the Drosophila radiation

inferred← citeshttps://doi.org/10.1038/s41598-019-55336-yopenalex-snapshot

Tempo and mode of allopatric divergence in the weakly electric fish Sternopygus dariensis in the Isthmus of Panama

inferred← citeshttps://doi.org/10.1038/s41598-022-08635-wopenalex-snapshot

Phenotypic disruption of cuticular hydrocarbon production in hybrids between sympatric species of Hawaiian picture-wing Drosophila

inferred← citeshttps://doi.org/10.1093/biolinnean/blx107openalex-snapshot

Testing the role of mating preference in a case of incomplete ecological speciation with gene flow

inferred← citeshttps://doi.org/10.1093/biolinnean/bly063openalex-snapshot

What is Speciation Genomics? The roles of ecology, gene flow, and genomic architecture in the formation of species

inferred← citeshttps://doi.org/10.1093/gbe/evae118openalex-snapshot

Gene Protein Sequence Evolution Can Predict the Rapid Divergence of Ovariole Numbers in the Drosophila melanogaster Subgroup

inferred← citeshttps://doi.org/10.1093/jhered/esab077openalex-snapshot

A Genome forBidens hawaiensis: A Member of a Hexaploid Hawaiian Plant Adaptive Radiation

inferred← citeshttps://doi.org/10.1093/molbev/msac012openalex-snapshot

Phylotranscriptomics Reveals Discordance in the Phylogeny of Hawaiian Drosophila and Scaptomyza (Diptera: Drosophilidae)

inferred← citeshttps://doi.org/10.1101/2023.09.03.556080openalex-snapshot

Gene protein sequence evolution can predict the rapid divergence of ovariole numbers in Drosophila

inferred← citeshttps://doi.org/10.1101/cshperspect.a041438openalex-snapshot

Genomic Approaches Are Improving Taxonomic Representation in Genetic Studies of Speciation

inferred← citeshttps://doi.org/10.1159/000481790openalex-snapshot

Mapping Genomic Scaffolds to Chromosomes Using Laser Capture Microdissection in Application to Hawaiian Picture-Winged Drosophila

inferred← citeshttps://doi.org/10.1242/jeb.250973openalex-snapshot

Microbiome composition shapes temperature tolerance in a Hawaiian picture-winged Drosophila

inferred← citeshttps://doi.org/10.1534/genetics.116.187120openalex-snapshot

Moving Speciation Genetics Forward: Modern Techniques Build on Foundational Studies in Drosophila

inferred← citeshttps://doi.org/10.1534/genetics.117.300583openalex-snapshot

Phylogeny of the Genus Drosophila

inferred← citeshttps://doi.org/10.24072/pcjournal.352openalex-snapshot

Does sociality affect evolutionary speed?

inferred← citeshttps://doi.org/10.5061/dryad.jv37vopenalex-snapshot

Data from: Testing the role of mating preference in a case of incomplete ecological speciation with gene flow

inferred← citeshttps://doi.org/10.70675/fcd25408z226az46dfz815bz96f32c906273openalex-snapshot

Analyse de la différenciation génétique à l'ère des nouvelles technologies de séquençage

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