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Amoebozoans are Secretly but Ancestrally Sexual: Evidence for Sex Genes and Potential Novel Crossover Pathways in Diverse Groups of Amoebae

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/bies.20764openalex-snapshot

Using a meiosis detection toolkit to investigate ancient asexual “scandals” and the evolution of sex

inferredcites →https://doi.org/10.1002/j.1537-2197.1944.tb08016.xopenalex-snapshot

A DESCRIPTIVE STUDY OF THE DEVELOPMENT OF THE SLIME MOLD DICTYOSTELIUM DISCOIDEUM

inferredcites →https://doi.org/10.1007/0-306-48104-9_3openalex-snapshot

Foraminifera: A biological overview

inferredcites →https://doi.org/10.1007/bf00292827openalex-snapshot

A cytological study of micronuclear elongation during conjugation in Tetrahymena

inferredcites →https://doi.org/10.1007/bf00399431openalex-snapshot

Fine structure of chromosome pairing in ten Ascomycetes: meiotic and premeiotic (mitotic) synaptonemal complexes

inferredcites →https://doi.org/10.1007/pl00013156openalex-snapshot

The First Sexual Lineage and the Relevance of Facultative Sex

inferredcites →https://doi.org/10.1007/s00412-006-0047-7openalex-snapshot

S. pombe linear elements: the modest cousins of synaptonemal complexes

inferredcites →https://doi.org/10.1007/s11248-005-8925-yopenalex-snapshot

Meiotic Transverse Filament Proteins: Essential for Crossing Over

inferredcites →https://doi.org/10.1016/0035-9203(89)90329-5openalex-snapshot

Experimental production of new zymodemes of Entamoeba histolytica supports the hypothesis of genetic exchange

inferredcites →https://doi.org/10.1016/0169-5347(92)90205-popenalex-snapshot

Covert sex

inferredcites →https://doi.org/10.1016/j.cub.2005.01.003openalex-snapshot

A Phylogenomic Inventory of Meiotic Genes

inferredcites →https://doi.org/10.1016/j.exppara.2009.02.007openalex-snapshot

Giardia duodenalis: Genetic recombination and its implications for taxonomy and molecular epidemiology

inferredcites →https://doi.org/10.1016/j.protis.2014.02.003openalex-snapshot

A Revision of the Order Pellitida Smirnov et al., 2011 (Amoebozoa, Discosea) Based on Ultrastructural and Molecular Evidence, with Description of Endostelium crystalliferum n. sp.

inferredcites →https://doi.org/10.1016/j.protis.2014.07.008openalex-snapshot

Evidence of Parasexual Activity in “Asexual Amoebae” Cochliopodium spp. (Amoebozoa): Extensive Cellular and Nuclear Fusion

inferredcites →https://doi.org/10.1016/j.pt.2005.08.006openalex-snapshot

The Entamoeba histolytica genome: something old, something new, something borrowed and sex too?

inferredcites →https://doi.org/10.1016/j.semcdb.2016.01.026openalex-snapshot

Atypical ploidy cycles, Spo11, and the evolution of meiosis

inferredcites →https://doi.org/10.1016/j.ympev.2007.11.015openalex-snapshot

Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within ‘Amoebozoa’ upon removal of varying rate classes of SSU-rDNA

inferredcites →https://doi.org/10.1016/j.ympev.2014.08.011openalex-snapshot

Multigene phylogeny resolves deep branching of Amoebozoa

inferredcites →https://doi.org/10.1016/j.ympev.2016.03.029openalex-snapshot

Phylogenomics of ‘Discosea’: A new molecular phylogenetic perspective on Amoebozoa with flat body forms

inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot

Basic Local Alignment Search Tool

inferredcites →https://doi.org/10.1016/s0074-7696(07)57003-8openalex-snapshot

Similarity of the Domain Structure of Proteins as a Basis for the Conservation of Meiosis

inferredcites →https://doi.org/10.1016/s0092-8674(00)81876-0openalex-snapshot

Meiosis-Specific DNA Double-Strand Breaks Are Catalyzed by Spo11, a Member of a Widely Conserved Protein Family

inferredcites →https://doi.org/10.1016/s0932-4739(11)80349-4openalex-snapshot

Meiosis in protists: Recent advances and persisting problems

inferredcites →https://doi.org/10.1016/s0932-4739(99)80049-2openalex-snapshot

The genus Flamella Schaeffer, 1926 (lobosea, gymnamoebia), with description of two new species

inferredcites →https://doi.org/10.1016/s0955-0674(96)80015-9openalex-snapshot

Synaptonemal complexes: structure and function

inferredcites →https://doi.org/10.1016/s0960-9822(05)00028-xopenalex-snapshot

A Phylogenomic Inventory of Meiotic GenesEvidence for Sex in Giardia and an Early Eukaryotic Origin of Meiosis

inferredcites →https://doi.org/10.1017/s0006323198005167openalex-snapshot

A revised six-kingdom system of life

inferredcites →https://doi.org/10.1023/a:1016086624640openalex-snapshot

Synaptonemal Complex Proteins: Specific Proteins of Meiotic Chromosomes

inferredcites →https://doi.org/10.1038/nsmb.1946openalex-snapshot

The resistance of DMC1 D-loops to dissociation may account for the DMC1 requirement in meiosis

inferredcites →https://doi.org/10.1073/pnas.0404195101openalex-snapshot

Heterodimeric complexes of Hop2 and Mnd1 function with Dmc1 to promote meiotic homolog juxtaposition and strand assimilation

inferredcites →https://doi.org/10.1073/pnas.0807880106openalex-snapshot

Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”

inferredcites →https://doi.org/10.1073/pnas.70.6.1828openalex-snapshot

Mating Types and Macrocyst Formation in Dictyostelium discoideum

inferredcites →https://doi.org/10.1073/pnas.72.3.970openalex-snapshot

Sexuality in the cellular slime mold Dictyostelium giganteum.

inferredcites →https://doi.org/10.1073/pnas.85.14.5156openalex-snapshot

Molecular evidence for somatic recombination in the ribosomal DNA of Tetrahymena thermophila.

inferredcites →https://doi.org/10.1073/pnas.87.7.2414openalex-snapshot

A clonal theory of parasitic protozoa: the population structures of Entamoeba, Giardia, Leishmania, Naegleria, Plasmodium, Trichomonas, and Trypanosoma and their medical and taxonomical consequences.

inferredcites →https://doi.org/10.1080/00275514.1967.12018400openalex-snapshot

The Ultrastructure of Meiosis in Three Species of Physarum

inferredcites →https://doi.org/10.1080/00275514.1984.12023927openalex-snapshot

The New Protostelid Genus Endostelium

inferredcites →https://doi.org/10.1080/10635150802429642openalex-snapshot

A Rapid Bootstrap Algorithm for the RAxML Web Servers

inferredcites →https://doi.org/10.1083/jcb.148.3.417openalex-snapshot

Organization of the Yeast Zip1 Protein within the Central Region of the Synaptonemal Complex

inferredcites →https://doi.org/10.1093/emboj/18.21.6177openalex-snapshot

Structure and function of an archaeal topoisomerase VI subunit with homology to the meiotic recombination factor Spo11

inferredcites →https://doi.org/10.1093/gbe/evw136openalex-snapshot

Mitochondria, the Cell Cycle, and the Origin of Sex via a Syncytial Eukaryote Common Ancestor

inferredcites →https://doi.org/10.1093/genetics/148.3.1109openalex-snapshot

High Frequency Intragenic Recombination During Macronuclear Development in Tetrahymena thermophila Restores the Wild-type SerH1 Gene

inferredcites →https://doi.org/10.1093/genetics/148.4.1829openalex-snapshot

High Frequency Recombination During the Sexual Cycle of Dictyostelium discoideum

inferredcites →https://doi.org/10.1093/molbev/msn032openalex-snapshot

The Dynamic Nature of Eukaryotic Genomes

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/molbev/msq066openalex-snapshot

An Alignment Confidence Score Capturing Robustness to Guide Tree Uncertainty

inferredcites →https://doi.org/10.1093/molbev/msq200openalex-snapshot

Evolution of the Actin Gene Family in Testate Lobose Amoebae (Arcellinida) is Characterized by Two Distinct Clades of Paralogs and Recent Independent Expansions

inferredcites →https://doi.org/10.1093/molbev/mst258openalex-snapshot

Meiosis Gene Inventory of Four Ciliates Reveals the Prevalence of a Synaptonemal Complex-Independent Crossover Pathway

inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

inferredcites →https://doi.org/10.1093/nar/gkt703openalex-snapshot

Mus81 nuclease and Sgs1 helicase are essential for meiotic recombination in a protist lacking a synaptonemal complex

inferredcites →https://doi.org/10.1098/rspb.2011.0289openalex-snapshot

The chastity of amoebae: re-evaluating evidence for sex in amoeboid organisms

inferredcites →https://doi.org/10.1099/00207713-52-2-297openalex-snapshot

The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa.

inferredcites →https://doi.org/10.1109/gce.2010.5676129openalex-snapshot

Creating the CIPRES Science Gateway for inference of large phylogenetic trees

inferredcites →https://doi.org/10.1111/j.1365-313x.2008.03403.xopenalex-snapshot

Expression and functional analysis of AtMUS81 in Arabidopsis meiosis reveals a role in the second pathway of crossing‐over

inferredcites →https://doi.org/10.1111/j.1462-5822.2006.00882.xopenalex-snapshot

Identification of developmentally regulated genes in Entamoeba histolytica: insights into mechanisms of stage conversion in a protozoan parasite

inferredcites →https://doi.org/10.1111/j.1550-7408.1976.tb05250.xopenalex-snapshot

Fine Structure of the Schizont Stage of the Testate Marine Ameba, Trichosphaerium sp.*

inferredcites →https://doi.org/10.1111/j.1550-7408.1992.tb01316.xopenalex-snapshot

Evidence for Meiosis in the Testate Amoeba Arcella

inferredcites →https://doi.org/10.1111/j.1550-7408.2012.00644.xopenalex-snapshot

The Revised Classification of Eukaryotes

inferredcites →https://doi.org/10.1111/jeu.12110openalex-snapshot

Cryptic Sex in Symbiodinium (Alveolata, Dinoflagellata) is Supported by an Inventory of Meiotic Genes

inferredcites →https://doi.org/10.1126/science.1153752openalex-snapshot

Evidence for Karyogamy and Exchange of Genetic Material in the Binucleate Intestinal Parasite Giardia intestinalis

inferredcites →https://doi.org/10.1126/science.162.3859.1289openalex-snapshot

Dictyostelium discoideum : A Gamma-Ray Resistant Organism

inferredcites →https://doi.org/10.1126/science.946914openalex-snapshot

Gametogenesis in Planktonic Foraminifera

inferredcites →https://doi.org/10.1128/br.40.1.190-240.1976openalex-snapshot

Meiosis in protists. Some structural and physiological aspects of meiosis in algae, fungi, and protozoa

inferredcites →https://doi.org/10.1128/mcb.20.4.1361-1369.2000openalex-snapshot

Yeast Meiosis-Specific Protein Hop1 Binds to G4 DNA and Promotes Its Formation

inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.391openalex-snapshot

Evolutionary Genetics of Life Cycles

inferredcites →https://doi.org/10.1146/annurev.ge.18.120184.001555openalex-snapshot

THE SYNAPTONEMAL COMPLEX IN GENETIC SEGREGATION

inferredcites →https://doi.org/10.1146/annurev.genet.18.1.331openalex-snapshot

The Synaptonemal Complex in Genetic Segregation

inferredcites →https://doi.org/10.1186/1471-2105-5-113openalex-snapshot

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

inferredcites →https://doi.org/10.1186/gb-2010-11-5-209openalex-snapshot

The origin and early evolution of eukaryotes in the light of phylogenomics

inferredcites →https://doi.org/10.1242/jcs.01203openalex-snapshot

S. pombemeiotic linear elements contain proteins related to synaptonemal complex components

inferredcites →https://doi.org/10.1371/currents.tol.c24b6054aebf3602748ac042ccc8f2e9openalex-snapshot

Building a Phylogenomic Pipeline for the Eukaryotic Tree of Life - Addressing Deep Phylogenies with Genome-Scale Data

inferredcites →https://doi.org/10.1371/journal.pgen.1000186openalex-snapshot

MUS81 Generates a Subset of MLH1-MLH3–Independent Crossovers in Mammalian Meiosis

inferredcites →https://doi.org/10.1371/journal.pone.0002879openalex-snapshot

An Expanded Inventory of Conserved Meiotic Genes Provides Evidence for Sex in Trichomonas vaginalis

inferredcites →https://doi.org/10.1371/journal.pone.0022780openalex-snapshot

Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-rDNA and Actin Genes

inferredcites →https://doi.org/10.1371/journal.pone.0046759openalex-snapshot

Whole Genome Sequencing of Mutation Accumulation Lines Reveals a Low Mutation Rate in the Social Amoeba Dictyostelium discoideum

inferredcites →https://doi.org/10.1371/journal.pone.0074465openalex-snapshot

Homologous Recombination Occurs in Entamoeba and Is Enhanced during Growth Stress and Stage Conversion

inferredcites →https://doi.org/10.1534/genetics.105.046821openalex-snapshot

Activation of an Alternative, Rec12 (Spo11)-Independent Pathway of Fission Yeast Meiotic Recombination in the Absence of a DNA Flap Endonuclease

inferredcites →https://doi.org/10.1534/genetics.109.101683openalex-snapshot

Alternative Induction of Meiotic Recombination From Single-Base Lesions of DNA Deaminases

inferredcites →https://doi.org/10.2113/gsjfr.27.4.319openalex-snapshot

Gametogenesis and the antiquity of reproductive pattern in the Foraminiferida

inferredcites →https://doi.org/10.2307/2483013openalex-snapshot

The Question of Sexuality in Cellular Slime Molds

inferredcites →https://doi.org/10.2307/3757000openalex-snapshot

Synaptinemal Complexes in Didymium iridis

inferredcites →https://doi.org/10.2307/3793145openalex-snapshot

The New Protostelid Genus Endostelium

inferredcites →https://doi.org/10.3852/11-427openalex-snapshot

Description and life cycle of a new Physarum (Myxomycetes) from the Atacama Desert in Chile

inferredcites →https://doi.org/10.5962/bhl.title.101747openalex-snapshot

Generelle Morphologie der Organismen : allgemeine Grundzuge der organischen Formen-Wissenschaft, mechanisch begrundet durch die von Charles Darwin reformirte Descendenz-Theorie /

inferredcites →https://doi.org/10.5962/bhl.title.102933openalex-snapshot

Generelle Morphologie der Organismen : allgemeine Grundzuge der organischen Formen-Wissenschaft, mechanisch begrundet durch die von Charles Darwin reformirte Descendenz-Theorie /

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/phytotaxa.399.3.5zenodo-depositor-declared

Towards a phylogenetic classification of the Myxomycetes

inferred← citeshttps://doi.org/10.1002/bies.201700198openalex-snapshot

Microbial Diversity in the Eukaryotic SAR Clade: Illuminating the Darkness Between Morphology and Molecular Data

inferred← citeshttps://doi.org/10.1002/bies.201900152openalex-snapshot

Ancestral Eukaryotes Reproduced Asexually, Facilitated by Polyploidy: A Hypothesis

inferred← citeshttps://doi.org/10.1007/978-3-030-59979-9_6openalex-snapshot

Polymorphic Life Histories and Sex

inferred← citeshttps://doi.org/10.1016/j.ejop.2019.01.005openalex-snapshot

The complete mitochondrial genome of Paravannella minima (Amoebozoa, Discosea, Vannellida)

inferred← citeshttps://doi.org/10.1016/j.ejop.2019.125660openalex-snapshot

Stygamoeba cauta n. sp. (Amoebozoa, Discosea) – a new brackish-water species from Nivå Bay (Baltic Sea, The Sound)

inferred← citeshttps://doi.org/10.1016/j.molbiopara.2021.111371openalex-snapshot

The sexual side of parasitic protists

inferred← citeshttps://doi.org/10.1038/s41477-019-0560-3openalex-snapshot

Genomes of early-diverging streptophyte algae shed light on plant terrestrialization

inferred← citeshttps://doi.org/10.1038/s41598-022-14131-yopenalex-snapshot

The draft genome of Cochliopodium minus reveals a complete meiosis toolkit and provides insight into the evolution of sexual mechanisms in Amoebozoa

inferred← citeshttps://doi.org/10.1093/evolut/qpad158openalex-snapshot

Single-cell transcriptomics supports presence of cryptic species and reveals low levels of population genetic diversity in two testate amoebae morphospecies with large population sizes

inferred← citeshttps://doi.org/10.1093/gbe/evy241openalex-snapshot

Comparative Genomics Supports Sex and Meiosis in Diverse Amoebozoa

inferred← citeshttps://doi.org/10.1093/jhered/esaa060openalex-snapshot

Opinion: Genetic Conflict With Mobile Elements Drives Eukaryotic Genome Evolution, and Perhaps Also Eukaryogenesis

inferred← citeshttps://doi.org/10.1093/jhered/esx078openalex-snapshot

Genetic Evidence for Sexuality in Cochliopodium (Amoebozoa)

inferred← citeshttps://doi.org/10.1093/mam/ozaf017openalex-snapshot

Visualizing Epigenetics: A Review of Microscopy Techniques for Investigating DNA Methylation Patterns, Chromatin Structure, and Gene Expression

inferred← citeshttps://doi.org/10.1093/molbev/msx162openalex-snapshot

Between a Pod and a Hard Test: The Deep Evolution of Amoebae

inferred← citeshttps://doi.org/10.1098/rsob.210049openalex-snapshot

Repurposing of synaptonemal complex proteins for kinetochores in Kinetoplastida

inferred← citeshttps://doi.org/10.1101/2021.02.06.430040openalex-snapshot

Repurposing of Synaptonemal Complex Proteins for Kinetochores in Kinetoplastida

inferred← citeshttps://doi.org/10.1101/2021.12.21.473654openalex-snapshot

Draft Genome of Cochliopodium minus (Amoebozoa): Insights into Its Complex Sexual Behavior, Across Domain Gene Acquisitions and Metazoan Type Signaling

inferred← citeshttps://doi.org/10.1101/2022.04.20.488852openalex-snapshot

Omics of an enigmatic marine amoeba uncovers unprecedented giant viruses gene trafficking and provides insights into its complex life cycle

inferred← citeshttps://doi.org/10.1111/jeu.12764openalex-snapshot

Three New Freshwater Cochliopodium Species (Himatismenida, Amoebozoa) from the Southeastern United States

inferred← citeshttps://doi.org/10.1111/jeu.12971openalex-snapshot

Phylogenetic placement of the protosteloid amoeba Microglomus paxillus identifies another case of sporocarpic fruiting in Discosea (Amoebozoa)

inferred← citeshttps://doi.org/10.1128/spectrum.03795-22openalex-snapshot

Extensive Cryptic Diversity and Ecological Associations Uncovered among Mexican and Global Collections of Naegleria and Vermamoeba Species by 18S Ribosomal DNA, Internal Transcribed Spacer, and Cytochrome Oxidase Subunit I Sequence Analysis

inferred← citeshttps://doi.org/10.1134/s1990519x19030027openalex-snapshot

Cyclic Polyploidy in Obligate Agamic Amoebae

inferred← citeshttps://doi.org/10.11606/t.41.2020.tde-16102019-091602openalex-snapshot

Evolução da meiose e sexo em Amoebozoa

inferred← citeshttps://doi.org/10.1371/journal.pbio.2004830openalex-snapshot

Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species

inferred← citeshttps://doi.org/10.1371/journal.pone.0235725openalex-snapshot

Differential gene expression analysis and cytological evidence reveal a sexual stage of an amoeba with multiparental cellular and nuclear fusion

inferred← citeshttps://doi.org/10.21203/rs.3.rs-1189994/v1openalex-snapshot

Draft Genome of Cochliopodium minus (Amoebozoa): Insights into Its Complex Sexual Behavior, Across Domain Gene Acquisitions and Metazoan Type Signaling

inferred← citeshttps://doi.org/10.3389/fcimb.2023.1220589openalex-snapshot

Giant cells: multiple cells unite to survive

inferred← citeshttps://doi.org/10.3389/fevo.2022.851816openalex-snapshot

Variation of natural selection in the Amoebozoa reveals heterogeneity across the phylogeny and adaptive evolution in diverse lineages

inferred← citeshttps://doi.org/10.3389/fmicb.2022.1056418openalex-snapshot

Naegleria genus pangenome reveals new structural and functional insights into the versatility of these free-living amoebae

inferred← citeshttps://doi.org/10.3390/genes12040487openalex-snapshot

Evolution of Multicellular Complexity in The Dictyostelid Social Amoebas

inferred← citeshttps://doi.org/10.3390/microbiolres14020047openalex-snapshot

Omics of an Enigmatic Marine Amoeba Uncovers Unprecedented Gene Trafficking from Giant Viruses and Provides Insights into Its Complex Life Cycle

inferred← citeshttps://doi.org/10.3390/microorganisms5040082openalex-snapshot

What Kills the Hindgut Flagellates of Lower Termites during the Host Molting Cycle?

inferred← citeshttps://doi.org/10.3897/ab.e38685openalex-snapshot

An Atlas of Sphagnum-Dwelling Testate Amoebae in Bulgaria

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Sexual Processes in Microbial Eukaryotes

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Genomic insights into mamiellophyceae organismal interactions

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Amoebae as a therapeutic approach to combat multidrug resistant bacteria

inferred← citeshttps://doi.org/10.7287/peerj.5894v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.5894v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Putatively asexual chrysophytes have meiotic genes: evidence from transcriptomic data (v0.1)"

Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.