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Multiple Roots of Fruiting Body Formation in Amoebozoa
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Eukaryotic Gene Prediction Using GeneMark.hmm‐E and GeneMark‐ES
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MONOGRAPH OF THE GENUS PROTOSTELIUM
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Clustal Omega, Accurate Alignment of Very Large Numbers of Sequences
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Evolutionary Transitions to Multicellular Life
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Social Amoebae and Their Genomes: On the Brink to True Multicellularity
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Cyclic AMP levels and turnover during development of the cellular slime mold Dictyostelium discoideum
inferredcites →https://doi.org/10.1016/0014-5793(95)00820-yopenalex-snapshot
A photoreceptor with characteristics of phytochrome triggers sporulation in the true slime mould Physarum polycephalum
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Genomics of Volvocine Algae
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Phosphotyrosine Signaling: Evolving a New Cellular Communication System
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The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity
inferredcites →https://doi.org/10.1016/j.cellsig.2013.10.008openalex-snapshot
The cyclic AMP phosphodiesterase RegA critically regulates encystation in social and pathogenic amoebas
inferredcites →https://doi.org/10.1016/j.cub.2012.04.021openalex-snapshot
Aggregative Multicellularity Evolved Independently in the Eukaryotic Supergroup Rhizaria
inferredcites →https://doi.org/10.1016/j.cub.2014.01.036openalex-snapshot
An Alternative Root for the Eukaryote Tree of Life
inferredcites →https://doi.org/10.1016/j.cub.2016.12.057openalex-snapshot
The Macronuclear Genome of Stentor coeruleus Reveals Tiny Introns in a Giant Cell
inferredcites →https://doi.org/10.1016/j.ejop.2011.10.001openalex-snapshot
A contemporary evaluation of the acrasids (Acrasidae, Heterolobosea, Excavata)
inferredcites →https://doi.org/10.1016/j.jmb.2016.08.003openalex-snapshot
Molecular Mechanisms of Two-Component Signal Transduction
inferredcites →https://doi.org/10.1016/j.protis.2005.09.001openalex-snapshot
A Plastid in the Making: Evidence for a Second Primary Endosymbiosis
inferredcites →https://doi.org/10.1016/j.protis.2010.09.003openalex-snapshot
“Slime Molds” among the Tubulinea (Amoebozoa): Molecular Systematics and Taxonomy of Copromyxa
inferredcites →https://doi.org/10.1016/j.ydbio.2014.04.001openalex-snapshot
Cell signaling during development of Dictyostelium
inferredcites →https://doi.org/10.1016/j.ympev.2016.03.023openalex-snapshot
187-gene phylogeny of protozoan phylum Amoebozoa reveals a new class (Cutosea) of deep-branching, ultrastructurally unique, enveloped marine Lobosa and clarifies amoeba evolution
inferredcites →https://doi.org/10.1023/a:1024483829878openalex-snapshot
cAMP signaling in Dictyostelium. Complexity of cAMP synthesis, degradation and detection.
inferredcites →https://doi.org/10.1038/ncomms12085openalex-snapshot
The multicellularity genes of dictyostelid social amoebas
inferredcites →https://doi.org/10.1038/ncomms14444openalex-snapshot
Innovation and constraint leading to complex multicellularity in the Ascomycota
inferredcites →https://doi.org/10.1038/ncomms3325openalex-snapshot
The Capsaspora genome reveals a complex unicellular prehistory of animals
inferredcites →https://doi.org/10.1038/srep09644openalex-snapshot
A Conserved Signalling Pathway for Amoebozoan Encystation that was Co-Opted for Multicellular Development
inferredcites →https://doi.org/10.1042/bj20061153openalex-snapshot
Seven Dictyostelium discoideum phosphodiesterases degrade three pools of cAMP and cGMP
inferredcites →https://doi.org/10.1073/pnas.0801314105openalex-snapshot
The protist, Monosiga brevicollis , has a tyrosine kinase signaling network more elaborate and diverse than found in any known metazoan
inferredcites →https://doi.org/10.1073/pnas.95.11.5857openalex-snapshot
SMART, a simple modular architecture research tool: Identification of signaling domains
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Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
inferredcites →https://doi.org/10.1080/15572536.2006.11832721openalex-snapshot
A new ballistosporous species ofProtostelium
inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot
MrBayes 3: Bayesian phylogenetic inference under mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/bth456openalex-snapshot
GO::TermFinder—open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
inferredcites →https://doi.org/10.1093/bioinformatics/btq683openalex-snapshot
Scaffolding pre-assembled contigs using SSPACE
inferredcites →https://doi.org/10.1093/bioinformatics/btu031openalex-snapshot
InterProScan 5: genome-scale protein function classification
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The Physarum polycephalum Genome Reveals Extensive Use of Prokaryotic Two-Component and Metazoan-Type Tyrosine Kinase Signaling
inferredcites →https://doi.org/10.1093/hmg/ddv254openalex-snapshot
Receptor tyrosine kinase mutations in developmental syndromes and cancer: two sides of the same coin
inferredcites →https://doi.org/10.1093/molbev/msp185openalex-snapshot
Phylogeny of the "Forgotten" Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta
inferredcites →https://doi.org/10.1093/molbev/msq209openalex-snapshot
Endosymbiotic Gene Transfer and Transcriptional Regulation of Transferred Genes in Paulinella chromatophora
inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
inferredcites →https://doi.org/10.1093/molbev/msx162openalex-snapshot
Between a Pod and a Hard Test: The Deep Evolution of Amoebae
inferredcites →https://doi.org/10.1093/nar/gkm321openalex-snapshot
KAAS: an automatic genome annotation and pathway reconstruction server
inferredcites →https://doi.org/10.1093/nar/gku1063openalex-snapshot
Rfam 12.0: updates to the RNA families database
inferredcites →https://doi.org/10.1101/gr.121137.111openalex-snapshot
Phylogeny-wide analysis of social amoeba genomes highlights ancient origins for complex intercellular communication
inferredcites →https://doi.org/10.1101/gr.1224503openalex-snapshot
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
inferredcites →https://doi.org/10.1111/ede.12013openalex-snapshot
The origins of multicellular organisms
inferredcites →https://doi.org/10.1111/j.1095-8312.2007.00864.xopenalex-snapshot
An empirical test of the midpoint rooting method
inferredcites →https://doi.org/10.1111/j.1440-169x.2010.01243.xopenalex-snapshot
STAT signaling in Dictyostelium development
inferredcites →https://doi.org/10.1111/j.1550-7408.1994.tb06051.xopenalex-snapshot
Revision of the Genus Protostelium (Eumycetozoa) I: The Protostelium mycophaga Group and the P. irregularis Group
inferredcites →https://doi.org/10.1111/j.1550-7408.2001.tb00197.xopenalex-snapshot
Phylogenetic Position of Sorogena stoianovitchae and Relationships within the Class Colpodea (Ciliophora) Based on SSU rDNA Sequences
inferredcites →https://doi.org/10.1111/jeu.12311openalex-snapshot
Sorodiplophrys stercorea : Another Novel Lineage of Sorocarpic Multicellularity
inferredcites →https://doi.org/10.1111/jeu.12476openalex-snapshot
Variation in the SSUrDNA of the Genus Protostelium Leads to a New Phylogenetic Understanding of the Genus and of the Species Concept for Protostelium mycophaga (Protosteliida, Amoebozoa)
inferredcites →https://doi.org/10.1126/science.1188800openalex-snapshot
Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri
inferredcites →https://doi.org/10.1126/science.290.5493.972openalex-snapshot
A Kingdom-Level Phylogeny of Eukaryotes Based on Combined Protein Data
inferredcites →https://doi.org/10.1126/scisignal.2002733openalex-snapshot
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases
inferredcites →https://doi.org/10.1186/1471-2148-4-2openalex-snapshot
A molecular timescale of eukaryote evolution and the rise of complex multicellular life
inferredcites →https://doi.org/10.1186/gb-2003-4-5-111openalex-snapshot
Genomic analysis of the eukaryotic protein kinase superfamily: a perspective.
inferredcites →https://doi.org/10.1186/gb-2013-14-2-r11openalex-snapshot
Genome of Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution of tyrosine kinase signaling
inferredcites →https://doi.org/10.1186/s12864-015-1278-xopenalex-snapshot
Comparative genome and transcriptome analyses of the social amoeba Acytostelium subglobosum that accomplishes multicellular development without germ-soma differentiation
inferredcites →https://doi.org/10.1186/s12864-016-3223-zopenalex-snapshot
A set of genes conserved in sequence and expression traces back the establishment of multicellularity in social amoebae
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1186/s13062-016-0171-0openalex-snapshot
Expansion of the molecular and morphological diversity of Acanthamoebidae (Centramoebida, Amoebozoa) and identification of a novel life cycle type within the group
inferredcites →https://doi.org/10.1186/s13100-016-0073-9openalex-snapshot
Convergent evolution of tRNA gene targeting preferences in compact genomes
inferredcites →https://doi.org/10.1242/jcs.172882openalex-snapshot
Altered N-glycosylation modulates TgrB1- and TgrC1-mediated development but not allorecognition in Dictyostelium
inferredcites →https://doi.org/10.1371/journal.pone.0006754openalex-snapshot
Eumycetozoa = Amoebozoa?: SSUrDNA Phylogeny of Protosteloid Slime Molds and Its Significance for the Amoebozoan Supergroup
inferredcites →https://doi.org/10.3852/mycologia.98.1.144openalex-snapshot
A new ballistosporous species of Protostelium
inferredcites →https://doi.org/10.7554/elife.01287openalex-snapshot
Regulated aggregative multicellularity in a close unicellular relative of metazoa
inferredcites →https://doi.org/10.7554/elife.26036openalex-snapshot
Dynamics of genomic innovation in the unicellular ancestry of animals
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.12688/openreseurope.15250.1zenodo-depositor-declared
Phylogeny-wide analysis of G-protein coupled receptors in social amoebas and implications for the evolution of multicellularity
inferred← citeshttps://doi.org/10.12688/openreseurope.15250.2zenodo-depositor-declared
Phylogeny-wide analysis of G-protein coupled receptors in social amoebas and implications for the evolution of multicellularity
inferred← citeshttps://doi.org/10.1007/978-3-030-33308-9_32openalex-snapshot
Cyclic di-GMP Activates Adenylate Cyclase A and Protein Kinase A to Induce Stalk Formation in Dictyostelium
inferred← citeshttps://doi.org/10.1007/978-3-030-44826-4_2openalex-snapshot
Resolving Amoebozoan Encystation from Dictyostelium Evo-Devo and Amoebozoan Comparative Genomics
inferred← citeshttps://doi.org/10.1007/978-3-031-29199-9_2openalex-snapshot
Evolution of Signalling and Morphogenesis in the Dictyostelids
inferred← citeshttps://doi.org/10.1007/s12268-021-1617-1openalex-snapshot
Jäger und Gejagte — wie sich Pilze gegen räuberische Amöben wehren
inferred← citeshttps://doi.org/10.1016/b978-0-12-805089-7.00009-3openalex-snapshot
Biogeographical Patterns in Myxomycetes
inferred← citeshttps://doi.org/10.1016/b978-0-12-824281-0.00008-7openalex-snapshot
The phylogeny and phylogenetically based classification of myxomycetes
inferred← citeshttps://doi.org/10.1016/b978-0-12-824281-0.00009-9openalex-snapshot
Biogeographical patterns in myxomycetes
inferred← citeshttps://doi.org/10.1016/j.bbrc.2023.09.090openalex-snapshot
Analysis of the trehalose synthesis pathway of Physarum polycehalum
inferred← citeshttps://doi.org/10.1016/j.cub.2021.04.076openalex-snapshot
The integrin-mediated adhesive complex in the ancestor of animals, fungi, and amoebae
inferred← citeshttps://doi.org/10.1016/j.mib.2021.04.010openalex-snapshot
Host-pathogen interactions: lessons from phagocytic predation on fungi
inferred← citeshttps://doi.org/10.1016/j.ygeno.2021.01.003openalex-snapshot
Analysis of organellar genomes in brown algae reveals an independent introduction of similar foreign sequences into the mitochondrial genome
inferred← citeshttps://doi.org/10.1016/j.ympev.2019.01.017openalex-snapshot
A well supported multi gene phylogeny of 52 dictyostelia
inferred← citeshttps://doi.org/10.1038/s41598-026-38605-5openalex-snapshot
Genome editing across Dictyostelia species enables comparative functional genetics of social amoebas
inferred← citeshttps://doi.org/10.1093/gbe/evy038openalex-snapshot
Highlight: Origins of Multicellularity Revealed by Single-Celled Amoebae
inferred← citeshttps://doi.org/10.1093/gbe/evy213openalex-snapshot
Diversity and Evolution of Sensor Histidine Kinases in Eukaryotes
inferred← citeshttps://doi.org/10.1093/nar/gkad797openalex-snapshot
Where the minor things are: a pan-eukaryotic survey suggests neutral processes may explain much of minor intron evolution
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.001.0001openalex-snapshot
Domains and Major Transitions of Social Evolution
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0001openalex-snapshot
A punctuated history of understanding social adaptation
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0002openalex-snapshot
The gene’s eye view that forged a neo-Darwinian synthesis
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0003openalex-snapshot
A reappraisal of progress in evolution
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0004openalex-snapshot
Necessary and sufficient conditions for major evolutionary transitions
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0005openalex-snapshot
Inclusive fitness as driver of cooperation for mutual benefit
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0006openalex-snapshot
The multicellular organisms and colonial superorganisms
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0007openalex-snapshot
The free-living prokaryotic and eukaryotic cells
inferred← citeshttps://doi.org/10.1093/oso/9780198746171.003.0008openalex-snapshot
Adaptation, control information, and the human condition
inferred← citeshttps://doi.org/10.1098/rsob.200206openalex-snapshot
Modelling population dynamics in a unicellular social organism community using a minimal model and evolutionary game theory
inferred← citeshttps://doi.org/10.1099/mic.0.000653openalex-snapshot
Encystation: the most prevalent and underinvestigated differentiation pathway of eukaryotes
inferred← citeshttps://doi.org/10.1101/2020.04.05.026054openalex-snapshot
Abundantly expressed class of non-coding RNAs conserved through the multicellular evolution of dictyostelid social amoebae
inferred← citeshttps://doi.org/10.1101/2020.04.29.069435openalex-snapshot
The integrin-mediated adhesome complex, essential to multicellularity, is present in the most recent common ancestor of animals, fungi, and amoebae
inferred← citeshttps://doi.org/10.1101/690503openalex-snapshot
Phagocytic predation by the fungivorous amoeba Protostelium aurantium targets metal ion and redox homeostasis
inferred← citeshttps://doi.org/10.1101/730879openalex-snapshot
Conidial melanin of the human pathogenic fungus Aspergillus fumigatus disrupts cell autonomous defenses in amoebae
inferred← citeshttps://doi.org/10.1101/gr.272856.120openalex-snapshot
Abundantly expressed class of noncoding RNAs conserved through the multicellular evolution of dictyostelid social amoebas
inferred← citeshttps://doi.org/10.1111/1462-2920.14588openalex-snapshot
The different morphologies of yeast and filamentous fungi trigger distinct killing and feeding mechanisms in a fungivorous amoeba
inferred← citeshttps://doi.org/10.1111/brv.12516openalex-snapshot
Two potential evolutionary origins of the fruiting bodies of the dictyostelid slime moulds
inferred← citeshttps://doi.org/10.1111/cmi.13389openalex-snapshot
The fungivorous amoeba Protostelium aurantium targets redox homeostasis and cell wall integrity during intracellular killing of Candida parapsilosis
inferred← citeshttps://doi.org/10.1111/jeu.12971openalex-snapshot
Phylogenetic placement of the protosteloid amoeba Microglomus paxillus identifies another case of sporocarpic fruiting in Discosea (Amoebozoa)
inferred← citeshttps://doi.org/10.1128/mbio.00342-24openalex-snapshot
The isoprenyl chain length of coenzyme Q mediates the nutritional resistance of fungi to amoeba predation
inferred← citeshttps://doi.org/10.1128/mbio.00862-20openalex-snapshot
Conidial Melanin of the Human-Pathogenic Fungus Aspergillus fumigatus Disrupts Cell Autonomous Defenses in Amoebae
inferred← citeshttps://doi.org/10.1128/mbio.01440-22openalex-snapshot
Toxin-Producing Endosymbionts Shield Pathogenic Fungus against Micropredators
inferred← citeshttps://doi.org/10.11606/d.41.2019.tde-11012019-153800openalex-snapshot
Transcriptome sequencing and annotation of the testate amoeba Arcella intermedia: Pathway description and gene discovery
inferred← citeshttps://doi.org/10.11606/t.41.2023.tde-23102023-180829openalex-snapshot
O impacto das condições ambientais na diversidade taxonômica e funcional de amebas tecadas
inferred← citeshttps://doi.org/10.1201/9780429351907-7openalex-snapshot
Eukaryote Aggregative Multicellularity
inferred← citeshttps://doi.org/10.1242/bio.059728openalex-snapshot
Development of the dictyostelid Polysphondylium violaceum does not require secreted cAMP
inferred← citeshttps://doi.org/10.1371/journal.ppat.1013542openalex-snapshot
“Pour some sugar on me”—Environmental Candida albicans isolates and the evolution of increased pathogenicity and antifungal resistance through sugar adaptation
inferred← citeshttps://doi.org/10.1387/ijdb.190108psopenalex-snapshot
Evolution of multicellularity in Dictyostelia
inferred← citeshttps://doi.org/10.2174/0929866530666230519160439openalex-snapshot
A Dual Leucine-rich Repeat in Proteins from the Eukaryotic SAR Group
inferred← citeshttps://doi.org/10.3390/antiox11051011openalex-snapshot
Evolution of Heme Peroxygenases: Ancient Roots and Later Evolved Branches
inferred← citeshttps://doi.org/10.3390/cells10071592openalex-snapshot
Regulation of the Actin Cytoskeleton via Rho GTPase Signalling in Dictyostelium and Mammalian Cells: A Parallel Slalom
inferred← citeshttps://doi.org/10.3390/genes12040487openalex-snapshot
Evolution of Multicellular Complexity in The Dictyostelid Social Amoebas
inferred← citeshttps://doi.org/10.47371/mycosci.2023.01.002openalex-snapshot
Re-examination of a rare protosteloid amoeba Schizoplasmodiopsis micropunctata, and the revision of Tychosporium (Cavosteliida, Variosea, Amoebozoa)
inferred← citeshttps://doi.org/10.7554/elife.62507openalex-snapshot
A putative origin of the insect chemosensory receptor superfamily in the last common eukaryotic ancestor
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