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PacBio-Based Mitochondrial Genome Assembly of Leucaena trichandra (Leguminosae) and an Intrageneric Assessment of Mitochondrial RNA Editing

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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RNA editing: a driving force for adaptive evolution?

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Plant Mitochondrial Genome Diversity: The Genomics Revolution

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The chloroplast trnP-trnW-petG gene cluster in the mitochondrial genomes of Beta vulgaris, B. trigyna and B. webbiana: evolutionary aspects

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Reaching for the ring: the study of mitochondrial genome structure

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Unicircular structure of the Brassica hirta mitochondrial genome

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Pollen tube attrition as related to breeding systems inBrassicaceae

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Moving pictures and pulsed-field gel electrophoresis show only linear mitochondrial DNA molecules from yeasts with linear-mapping and circular-mapping mitochondrial genomes

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Maintenance of chloroplast-derived sequences in the mitochondrial DNA of Gramineae

inferredcites →https://doi.org/10.1007/s11103-013-0069-5openalex-snapshot

Differential regulation of Arabidopsis plastid gene expression and RNA editing in non-photosynthetic tissues

inferredcites →https://doi.org/10.1016/0022-2836(92)90708-ropenalex-snapshot

Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA

inferredcites →https://doi.org/10.1016/0092-8674(81)90187-2openalex-snapshot

The mitochondrial genome is large and variable in a family of plants (Cucurbitaceae)

inferredcites →https://doi.org/10.1016/j.crvi.2003.09.004openalex-snapshot

Expanding genome capacity via RNA editing

inferredcites →https://doi.org/10.1016/j.mito.2007.10.006openalex-snapshot

Angiosperm mitochondrial genomes and mutations

inferredcites →https://doi.org/10.1016/j.mito.2014.05.008openalex-snapshot

Comparative analysis of 11 Brassicales mitochondrial genomes and the mitochondrial transcriptome of Brassica oleracea

inferredcites →https://doi.org/10.1038/307437a0openalex-snapshot

Tripartite structure of the Brassica campestris mitochondrial genome

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Widespread horizontal transfer of mitochondrial genes in flowering plants

inferredcites →https://doi.org/10.1038/nbt.1621openalex-snapshot

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot

Fast gapped-read alignment with Bowtie 2

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Mimosoid legume plastome evolution: IR expansion, tandem repeat expansions and accelerated rate of evolution in clpP

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The massive mitochondrial genome of the angiosperm Silene noctiflora is evolving by gain or loss of entire chromosomes

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Miniaturized mitogenome of the parasitic plant Viscum scurruloideum is extremely divergent and dynamic and has lost all nad genes

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Extensive and widespread homologies between mitochondrial DNA and chloroplast DNA in plants

inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

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Trimmomatic: a flexible trimmer for Illumina sequence data

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Recent Acceleration of Plastid Sequence and Structural Evolution Coincides with Extreme Mitochondrial Divergence in the Angiosperm Genus Silene

inferredcites →https://doi.org/10.1093/gbe/evw003openalex-snapshot

Linear Plasmids and the Rate of Sequence Evolution in Plant Mitochondrial Genomes

inferredcites →https://doi.org/10.1093/gbe/evx010openalex-snapshot

Causes and Consequences of Rapidly Evolving mtDNA in a Plant Lineage

inferredcites →https://doi.org/10.1093/gbe/evx086openalex-snapshot

Mitochondrial Genome Evolution and a Novel RNA Editing System in Deep-Branching Heteroloboseids

inferredcites →https://doi.org/10.1093/genetics/158.3.1289openalex-snapshot

Multiple Losses and Transfers to the Nucleus of Two Mitochondrial Succinate Dehydrogenase Genes During Angiosperm Evolution

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Insights into the Evolution of Mitochondrial Genome Size from Complete Sequences of Citrullus lanatus and Cucurbita pepo (Cucurbitaceae)

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tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot

Tandem repeats finder: a program to analyze DNA sequences

inferredcites →https://doi.org/10.1093/nar/gki925openalex-snapshot

Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome

inferredcites →https://doi.org/10.1093/nar/gkq202openalex-snapshot

Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing

inferredcites →https://doi.org/10.1093/nar/gkw188openalex-snapshot

Novel modes of RNA editing in mitochondria

inferredcites →https://doi.org/10.1101/gr.215087.116openalex-snapshot

Canu: scalable and accurate long-read assembly via adaptive k -mer weighting and repeat separation

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Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis[W]

inferredcites →https://doi.org/10.1111/j.1469-8137.2011.03746.xopenalex-snapshot

The evolution of RNA editing and pentatricopeptide repeat genes

inferredcites →https://doi.org/10.1111/nph.12395openalex-snapshot

One ring to rule them all? Genome sequencing provides new insights into the ‘master circle’ model of plant mitochondrial DNA structure

inferredcites →https://doi.org/10.1111/nph.14361openalex-snapshot

Unparalleled replacement of native mitochondrial genes by foreign homologs in a holoparasitic plant

inferredcites →https://doi.org/10.1126/science.1246275openalex-snapshot

Horizontal Transfer of Entire Genomes via Mitochondrial Fusion in the Angiosperm Amborella

inferredcites →https://doi.org/10.1146/annurev-arplant-043015-112232openalex-snapshot

Plant Mitochondrial Genomes: Dynamics and Mechanisms of Mutation

inferredcites →https://doi.org/10.1186/1471-2105-13-238openalex-snapshot

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

inferredcites →https://doi.org/10.1186/1471-2164-11-s4-s12openalex-snapshot

RNA editing of nuclear transcripts in Arabidopsis thaliana

inferredcites →https://doi.org/10.1186/1471-2164-15-31openalex-snapshot

Deep sequencing of the tobacco mitochondrial transcriptome reveals expressed ORFs and numerous editing sites outside coding regions

inferredcites →https://doi.org/10.1186/1471-2229-12-61openalex-snapshot

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inferredcites →https://doi.org/10.1186/1741-7007-11-29openalex-snapshot

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inferredcites →https://doi.org/10.1186/1741-7007-6-36openalex-snapshot

Complex chloroplast RNA metabolism: just debugging the genetic programme?

inferredcites →https://doi.org/10.1186/1741-7007-8-150openalex-snapshot

Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes

inferredcites →https://doi.org/10.1186/gb-2013-14-12-r134openalex-snapshot

TRAPID: an efficient online tool for the functional and comparative analysis of de novoRNA-Seq transcriptomes

inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot

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inferredcites →https://doi.org/10.1186/s12862-015-0279-3openalex-snapshot

The origin of the ADAR gene family and animal RNA editing

inferredcites →https://doi.org/10.1186/s12864-015-2155-3openalex-snapshot

High transcript abundance, RNA editing, and small RNAs in intergenic regions within the massive mitochondrial genome of the angiosperm Silene noctiflora

inferredcites →https://doi.org/10.1186/s12864-015-2291-9openalex-snapshot

Complex regulation of ADAR-mediated RNA-editing across tissues

inferredcites →https://doi.org/10.1186/s13059-015-0849-0openalex-snapshot

Circlator: automated circularization of genome assemblies using long sequencing reads

inferredcites →https://doi.org/10.12705/661.3openalex-snapshot

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny: The Legume Phylogeny Working Group (LPWG)

inferredcites →https://doi.org/10.1371/journal.pbio.1001241openalex-snapshot

Rapid Evolution of Enormous, Multichromosomal Genomes in Flowering Plant Mitochondria with Exceptionally High Mutation Rates

inferredcites →https://doi.org/10.1371/journal.pgen.1003265openalex-snapshot

Massive Mitochondrial Gene Transfer in a Parasitic Flowering Plant Clade

inferredcites →https://doi.org/10.1371/journal.pone.0011518openalex-snapshot

Read Length and Repeat Resolution: Exploring Prokaryote Genomes Using Next-Generation Sequencing Technologies

inferredcites →https://doi.org/10.1371/journal.pone.0016404openalex-snapshot

The Mitochondrial Genome of the Legume Vigna radiata and the Analysis of Recombination across Short Mitochondrial Repeats

inferredcites →https://doi.org/10.1371/journal.pone.0056502openalex-snapshot

The Mitochondrial Genome of Soybean Reveals Complex Genome Structures and Gene Evolution at Intercellular and Phylogenetic Levels

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Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

inferredcites →https://doi.org/10.2307/25027876openalex-snapshot

Monograph of Leucaena (Leguminosae-Mimosoideae)

inferredcites →https://doi.org/10.3389/fnmol.2016.00124openalex-snapshot

RNA Editing—Systemic Relevance and Clue to Disease Mechanisms?

inferredcites →https://doi.org/10.3390/genes8010005openalex-snapshot

RNA Editing and Its Molecular Mechanism in Plant Organelles

inferredcites →https://doi.org/10.3732/ajb.1100259openalex-snapshot

Phylogenetic and population genetic analyses of diploid Leucaena (Leguminosae; Mimosoideae) reveal cryptic species diversity and patterns of divergent allopatric speciation

inferredcites →https://doi.org/10.3732/ajb.1100260openalex-snapshot

The complex evolutionary dynamics of ancient and recent polyploidy in Leucaena (Leguminosae; Mimosoideae)

inferredcites →https://doi.org/10.3732/ajb.1700293openalex-snapshot

Cytonuclear responses to genome doubling

inferredcites →https://doi.org/10.3732/ajb.89.7.1057openalex-snapshot

Divergent and reticulate species relationships in Leucaena (Fabaceae) inferred from multiple data sources: insights into polyploid origins and nrDNA polymorphism

inferredcites →https://doi.org/10.4161/rna.7.2.11343openalex-snapshot

Plant RNA editing

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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When and why are mitochondria paternally inherited?

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Assembly and comparative analyses of the mitochondrial genome of Castanospermum australe (Papilionoideae, Leguminosae)

inferred← citeshttps://doi.org/10.1071/sb19019openalex-snapshot

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inferred← citeshttps://doi.org/10.1186/s12870-023-04538-8openalex-snapshot

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Additional file 10 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622616openalex-snapshot

Additional file 1 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622619openalex-snapshot

Additional file 2 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622622openalex-snapshot

Additional file 3 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622625openalex-snapshot

Additional file 4 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622628openalex-snapshot

Additional file 5 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622631openalex-snapshot

Additional file 6 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622634openalex-snapshot

Additional file 7 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622637openalex-snapshot

Additional file 8 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.21622640openalex-snapshot

Additional file 9 of Comparative analyses of three complete Primula mitogenomes with insights into mitogenome size variation in Ericales

inferred← citeshttps://doi.org/10.6084/m9.figshare.24295625openalex-snapshot

Additional file 1 of Assembly and comparative analysis of the complete mitochondrial genome of Viburnum chinshanense

inferred← citeshttps://doi.org/10.6084/m9.figshare.24295755openalex-snapshot

Additional file 2 of Assembly and comparative analysis of the complete mitochondrial genome of Viburnum chinshanense

inferred← citeshttps://doi.org/10.6084/m9.figshare.24439316openalex-snapshot

Additional file 1 of Multichromosomal mitochondrial genome of Punica granatum: comparative evolutionary analysis and gene transformation from chloroplast genomes

inferred← citeshttps://doi.org/10.64898/2026.01.06.697924openalex-snapshot

Draft mitochondrial genome of the tree species Neltuma alba (Caesalpinioideae, tribe Mimoseae ) from the Atacama Desert, Chile

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Coordinated Evolutionary Rates in Oxidative Phosphorylation Complexes of Papilionoid Legumes: Cytonuclear Coevolution and Relaxed Selection

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Assembly and evolutionary analysis of the complete mitochondrial genome of Trichosanthes kirilowii, a traditional Chinese medicinal plant

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