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Cycad Coralloid Roots Contain Bacterial Communities Including Cyanobacteria and Caulobacter spp. That Encode Niche-Specific Biosynthetic Gene Clusters

https://doi.org/10.1093/gbe/evy266
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Morphological and genetic diversity of symbiotic cyanobacteria from cycads
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Differential contributions of two SARP family regulatory genes to indigoidine biosynthesis in Streptomyces lavendulae FRI-5
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An indigoidine biosynthetic gene cluster from Streptomyces chromofuscus ATCC 49982 contains an unusual IndB homologue
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Identification and characterization of an indigoidine-like gene for a blue pigment biosynthesis in Streptomyces aureofaciens CCM 3239
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Highly diverse endophytes in roots of Cycas bifida (Cycadaceae), an ancient but endangered gymnosperm
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Novel antibacterial azetidine lincosamides
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Sequence based data supports a single Nostoc strain in individual coralloid roots of cycads
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Impact of metagenomic DNA extraction procedures on the identifiable endophytic bacterial diversity in Sorghum bicolor (L. Moench)
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Proteases in plant root symbiosis
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Bioactive natural products from marine cyanobacteria for drug discovery
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Structure of the “heterocyst glycolipids” of the marine cyanobacterium Nodularia harveyana
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Modified peptides from a water bloom of the cyanobacterium Nostoc sp.
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Chapter 8 Methods for In Silico Prediction of Microbial Polyketide and Nonribosomal Peptide Biosynthetic Pathways from DNA Sequence Data
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High cyanobacterial diversity in coralloid roots of cycads revealed by PCR fingerprinting
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Cyanobiont diversity within coralloid roots of selected cycad species
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The identification of the coralloid root endophytes of the southern African cycads and the ability of the isolates to fix dinitrogen
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The cyanobiont in anAzollafern is neitherAnabaenanorNostoc
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Myxochelin Biosynthesis: Direct Evidence for Two- and Four-Electron Reduction of a Carrier Protein-Bound Thioester
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Microbial Complexes Occurring on the Apogeotropic Roots and in the Rhizosphere of Cycad Plants
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The Structure of Cyanobacterial Communities Formed during the Degradation of Apogeotropic Roots of Cycads
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Atypical Cell Forms Overproducing Extracellular Substances in Populations of Cycad Cyanobionts
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Blue-Green Algae: Growth
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High diversity of cultivable heterotrophic bacteria in association with cyanobacterial water blooms
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Linearly concatenated cyclobutane lipids form a dense bacterial membrane
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YcaO domains use ATP to activate amide backbones during peptide cyclodehydrations
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Mediators of mutualistic microbe–microbe interactions
inferredcites →https://doi.org/10.1071/bi9651135openalex-snapshot
Nitrogen Fixation in the Coralloid Roots of Macrozamia Communis L. Johnson
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Effects of Fire on the Growth, Nutrient Content and Rate of Nitrogen Fixation of the Cycad Macrozamia riedlei
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Symbiotic Nitrogen Fixation by Coralloid Roots of the Cycad Macrozamia riedlei : Physiological Characteristics and Ecological Significance
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Improvement of Phylogenies after Removing Divergent and Ambiguously Aligned Blocks from Protein Sequence Alignments
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The phylogeography of the cycad genus Dioon (Zamiaceae) clarifies its Cenozoic expansion and diversification in the Mexican transition zone
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MODELTEST: testing the model of DNA substitution.
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Fast and accurate short read alignment with Burrows–Wheeler transform
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Trimmomatic: a flexible trimmer for Illumina sequence data
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Revisiting life strategy concepts in environmental microbial ecology
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Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits
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Random Addition Concatenation Analysis: A Novel Approach to the Exploration of Phylogenomic Signal Reveals Strong Agreement between Core and Shell Genomic Partitions in the Cyanobacteria
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Genomic Changes Associated with the Evolutionary Transitions of Nostoc to a Plant Symbiont
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MUSCLE: multiple sequence alignment with high accuracy and high throughput
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The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM)
inferredcites →https://doi.org/10.1093/nar/gkv437openalex-snapshot
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
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Host Selection of Symbiotic Cyanobacteria in 31 Species of the Australian Cycad Genus: Macrozamia (Zamiaceae)
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ON THE PHYCOBIONTS OF THE CYCAD CORALLOID ROOTS
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Reconstitution of the symbiosis of Gunnera manicata Linden: cyanobacterial specificity
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DIVERSITY AND HOST SPECIFICITY OF AZOLLA CYANOBIONTS1
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ISOLATION OF CALOTHRIX RHIZOSOLENIAE (CYANOBACTERIA) STRAIN SC01 FROM CHAETOCEROS (BACILLARIOPHYTA) SPP. DIATOMS OF THE SUBTROPICAL NORTH PACIFIC OCEAN1
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Comparative analysis of cyanobacteria in the rhizosphere and as endosymbionts of cycads in drought-affected soils
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Genetic diversity of symbiotic cyanobacteria in Cycas revoluta (Cycadaceae)
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Small molecules below‐ground: the role of specialized metabolites in the rhizosphere
inferredcites →https://doi.org/10.1126/science.159.3815.648openalex-snapshot
Somatic Reduction in Cycads
inferredcites →https://doi.org/10.1128/aem.00297-12openalex-snapshot
Production of the Antimicrobial Secondary Metabolite Indigoidine Contributes to Competitive Surface Colonization by the Marine Roseobacter Phaeobacter sp. Strain Y4I
inferredcites →https://doi.org/10.1128/genomea.00021-18openalex-snapshot
Draft Genome Sequence of the Nitrogen-Fixing and Hormogonia-Inducing Cyanobacterium Nostoc cycadae Strain WK-1, Isolated from the Coralloid Roots of Cycas revoluta
inferredcites →https://doi.org/10.1128/genomea.01721-15openalex-snapshot
Genome Sequence of Selenium-Solubilizing Bacterium Caulobacter vibrioides T5M6
inferredcites →https://doi.org/10.1128/jb.00343-10openalex-snapshot
CrfA, a Small Noncoding RNA Regulator of Adaptation to Carbon Starvation in Caulobacter crescentus
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Characterization of Indigoidine Biosynthetic Genes in Erwinia chrysanthemi and Role of This Blue Pigment in Pathogenicity
inferredcites →https://doi.org/10.1134/s0026261710030069openalex-snapshot
Morphological and physiological modifications of cyanobacteria in experimental cyanobacterium-actinomycete associations
inferredcites →https://doi.org/10.1139/m92-218openalex-snapshot
Cyanobiont diversity within and among cycads of one field site
inferredcites →https://doi.org/10.1186/1471-2105-11-24openalex-snapshot
ETE: a python Environment for Tree Exploration
inferredcites →https://doi.org/10.1186/1471-2164-9-75openalex-snapshot
The RAST Server: Rapid Annotations using Subsystems Technology
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Distinctive characters of Nostoc genomes in cyanolichens
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Resequencing and annotation of the Nostoc punctiforme ATTC 29133 genome: facilitating biofuel and high-value chemical production
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Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
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Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks
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New Structural Variants of Aeruginosin Produced by the Toxic Bloom Forming Cyanobacterium Nodularia spumigena
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Unlocking a high bacterial diversity in the coralloid root microbiome from the cycad genus Dioon
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The Biology of the Cycads

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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The diversity and community structure of symbiotic cyanobacteria in hornworts inferred from long‐read amplicon sequencing
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S2B, a Temperate Bacteriophage That Infects Caulobacter Crescentus Strain CB15
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How the right evolved partners in Cycads and Legumes drive enhanced growth in a harsh environment
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Diversity of symbiotic cyanobacteria in cycad coralloid roots using a short-read rbcL-X amplicon
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Wild populations possess higher endophytic fungal diversity and structural complexity than ex-situ plants in coralloid roots of a cycad in Southwest China
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Specialized metabolic convergence in the gut microbiomes of cycad-feeding insects tolerant to β-methylamino-L-alanine (BMAA)
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Biological invasion by the cycad‐specific scale pest Aulacaspis yasumatsui ( Diaspididae ) into Cycas revoluta ( Cycadaceae ) populations on Amami‐Oshima and Okinawa ‐jima, Japan
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Chemical ecology of symbioses in cycads, an ancient plant lineage
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Conserved symbiosis‐associated genes in the cycad Encephalartos natalensis suggest co‐option for cyanobacterial symbiosis
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Plant–Environment Response Pathway Regulation Uncovered by Investigating Non-Typical Legume Symbiosis and Nodulation
inferred← citeshttps://doi.org/10.3390/plants14111600openalex-snapshot
Distribution Pattern of Endangered Cycas taiwaniana Carruth. in China Under Climate-Change Scenarios Using the MaxEnt Model
inferred← citeshttps://doi.org/10.3390/soilsystems8010021openalex-snapshot
Exploring the Influence of Ecological Niches and Hologenome Dynamics on the Growth of Encephalartos villosus in Scarp Forests
inferred← citeshttps://doi.org/10.3390/taxonomy4010010openalex-snapshot
Genomic Insights into the Taxonomy and Metabolism of the Cyanobacterium Pannus brasiliensis CCIBt3594
inferred← citeshttps://doi.org/10.4314/ijbcs.v16i2.15openalex-snapshot
Le s symbioses fixatrices d’azote : types et régulateurs t ranscriptionnels de la nodulation
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