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Genome assembly of the common pheasant Phasianus colchicus, a model for speciation and ecological genomics

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/s10528-013-9626-5openalex-snapshot

Phylogeography-Based Delimitation of Subspecies Boundaries in the Common Pheasant (Phasianus colchicus)

inferredcites →https://doi.org/10.1016/0378-1119(88)90492-1openalex-snapshot

Conserved sequences and structures of group I introns: building an active site for RNA catalysis — a review

inferredcites →https://doi.org/10.1016/c2009-0-00447-4openalex-snapshot

RNA: Catalysis, Splicing, Evolution

inferredcites →https://doi.org/10.1016/j.cub.2016.06.034openalex-snapshot

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers

inferredcites →https://doi.org/10.1016/j.tree.2013.09.008openalex-snapshot

Genome sequencing and population genomics in non-model organisms

inferredcites →https://doi.org/10.1016/j.ympev.2009.03.015openalex-snapshot

Phylogeography of the ring-necked pheasant (Phasianus colchicus) in China

inferredcites →https://doi.org/10.1016/j.ympev.2009.12.026openalex-snapshot

Effect of geological vicariance on mitochondrial DNA differentiation in Common Pheasant populations of the Loess Plateau and eastern China

inferredcites →https://doi.org/10.1016/s0959-440x(98)80067-5openalex-snapshot

Repeats in genomic DNA: mining and meaning

inferredcites →https://doi.org/10.1038/nature11584openalex-snapshot

The genomic landscape of species divergence in Ficedula flycatchers

inferredcites →https://doi.org/10.1038/nrg1226openalex-snapshot

The power and promise of population genomics: from genotyping to genome typing

inferredcites →https://doi.org/10.1046/j.1420-9101.2001.00335.xopenalex-snapshot

The genic view of the process of speciation

inferredcites →https://doi.org/10.1093/bioinformatics/btg1080openalex-snapshot

Gene prediction with a hidden Markov model and a new intron submodel

inferredcites →https://doi.org/10.1093/bioinformatics/bti1018openalex-snapshot

De novo identification of repeat families in large genomes

inferredcites →https://doi.org/10.1093/bioinformatics/btr011openalex-snapshot

A fast, lock-free approach for efficient parallel counting of occurrences of k -mers

inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

inferredcites →https://doi.org/10.1093/nar/27.2.573openalex-snapshot

Tandem repeats finder: a program to analyze DNA sequences

inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot

Database resources of the National Center for Biotechnology Information: update

inferredcites →https://doi.org/10.1093/nar/gki937openalex-snapshot

Gene identification in novel eukaryotic genomes by self-training algorithm

inferredcites →https://doi.org/10.1093/nar/gkw1071openalex-snapshot

Database Resources of the National Center for Biotechnology Information

inferredcites →https://doi.org/10.1101/gr.094052.109openalex-snapshot

Fast model-based estimation of ancestry in unrelated individuals

inferredcites →https://doi.org/10.1101/gr.10.4.516openalex-snapshot

Ab initio Gene Finding in Drosophila Genomic DNA

inferredcites →https://doi.org/10.1101/gr.170720.113openalex-snapshot

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

inferredcites →https://doi.org/10.1101/gr.196485.115openalex-snapshot

Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers

inferredcites →https://doi.org/10.1101/gr.5045006openalex-snapshot

Genomic islands of differentiation between house mouse subspecies

inferredcites →https://doi.org/10.1101/gr.5681207openalex-snapshot

Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers

inferredcites →https://doi.org/10.1101/gr.88502openalex-snapshot

Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes

inferredcites →https://doi.org/10.1111/2041-210x.12700openalex-snapshot

Bioinformatic processing of RAD‐seq data dramatically impacts downstream population genetic inference

inferredcites →https://doi.org/10.1111/ibi.12455openalex-snapshot

Phylogeography of the Common Pheasant Phasianus colchicus

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.03946.xopenalex-snapshot

Divergent selection and heterogeneous genomic divergence

inferredcites →https://doi.org/10.1111/j.1474-919x.2008.00851.xopenalex-snapshot

Nest predation of Common Pheasants Phasianus colchicus

inferredcites →https://doi.org/10.1111/mec.12796openalex-snapshot

Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow

inferredcites →https://doi.org/10.1111/mec.14195openalex-snapshot

Genomewide patterns of variation in genetic diversity are shared among populations, species and higher‐order taxa

inferredcites →https://doi.org/10.1126/science.1253226openalex-snapshot

The genomic landscape underlying phenotypic integrity in the face of gene flow in crows

inferredcites →https://doi.org/10.1126/science.aal3298openalex-snapshot

Recent natural selection causes adaptive evolution of an avian polygenic trait

inferredcites →https://doi.org/10.1186/1471-2105-12-491openalex-snapshot

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

inferredcites →https://doi.org/10.1186/1471-2105-6-31openalex-snapshot

Automated generation of heuristics for biological sequence comparison

inferredcites →https://doi.org/10.1186/s40657-017-0060-yopenalex-snapshot

Development and characterization of novel microsatellite markers for the Common Pheasant (Phasianus colchicus) using RAD-seq

inferredcites →https://doi.org/10.1371/journal.pbio.0030285openalex-snapshot

Genomic Islands of Speciation in Anopheles gambiae

inferredcites →https://doi.org/10.1371/journal.pgen.1003942openalex-snapshot

Demographic Divergence History of Pied Flycatcher and Collared Flycatcher Inferred from Whole-Genome Re-sequencing Data

inferredcites →https://doi.org/10.2307/3809229openalex-snapshot

The Pheasant. Ecology, Management and Conservation

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1093/zoolinnean/zlae094zenodo-depositor-declared

Limited genetic depletion despite extinction risk: genomic diversity of a peripheral population of red-spotted bluethroats in Central Europe

inferred← citeshttps://doi.org/10.1007/13836_2020_83openalex-snapshot

Wildlife Population Genomics: Applications and Approaches

inferred← citeshttps://doi.org/10.1016/j.avrs.2023.100156openalex-snapshot

Population genomic data reveal low genetic diversity, divergence and local adaptation among threatened Reeves's Pheasant (Syrmaticus reevesii)

inferred← citeshttps://doi.org/10.1016/j.avrs.2025.100234openalex-snapshot

Distinguishing between wild-caught and captive-bred Common Pheasant using methylation rate of skeletal muscle DNA

inferred← citeshttps://doi.org/10.1016/j.psj.2022.102452openalex-snapshot

Comparative analysis of physical, morphological, and mechanical characteristics of eggs from three pheasant subspecies

inferred← citeshttps://doi.org/10.1038/s41598-021-00567-1openalex-snapshot

Assessing the origin, genetic structure and demographic history of the common pheasant (Phasianus colchicus) in the introduced European range

inferred← citeshttps://doi.org/10.1038/s41598-023-33649-3openalex-snapshot

The screening method for use of wild pheasant feathers in the monitoring of environmental pollution with heavy metals

inferred← citeshttps://doi.org/10.1038/s41598-024-70018-0openalex-snapshot

Hybrid assembly and comparative genomics unveil insights into the evolution and biology of the red-legged partridge

inferred← citeshttps://doi.org/10.1093/dnares/dsae001openalex-snapshot

Hybrid de novo genome assembly of the sexually dimorphic Lady Amherst’s pheasant

inferred← citeshttps://doi.org/10.1093/g3journal/jkac083openalex-snapshot

A high-quality genome assembly and annotation of the dark-eyed junco Junco hyemalis, a recently diversified songbird

inferred← citeshttps://doi.org/10.1093/molbev/msad243openalex-snapshot

Redefining the Evolutionary History of the Rock Dove, Columba livia, Using Whole Genome Sequences

inferred← citeshttps://doi.org/10.1093/molbev/msad270openalex-snapshot

A Fast, Reproducible, High-throughput Variant Calling Workflow for Population Genomics

inferred← citeshttps://doi.org/10.1101/2023.04.12.536150openalex-snapshot

Redefining rock doves, Columba livia , using historical whole genome sequences

inferred← citeshttps://doi.org/10.1101/2024.01.11.575009openalex-snapshot

An almost chromosome-level assembly and annotation of the Alectoris rufa genome

inferred← citeshttps://doi.org/10.1111/jav.02979openalex-snapshot

Disentangling the relative roles of geographical and ecological factors in driving genomic variations of a widely distributed bird across a longitudinal gradient

inferred← citeshttps://doi.org/10.1111/jbi.13964openalex-snapshot

Regional drivers of diversification in the late Quaternary in a widely distributed generalist species, the common pheasant Phasianus colchicus

inferred← citeshttps://doi.org/10.22541/au.169227891.12660232/v1openalex-snapshot

Genome of Alectoris chukar provide insights into its domestication, adaptation, and origin

inferred← citeshttps://doi.org/10.25226/bboc.v143i2.2023.a3openalex-snapshot

The Founding Feathers: the true ancestry of the domestic Barbary Dove

inferred← citeshttps://doi.org/10.32718/ujvas7-1.02openalex-snapshot

The current state of development and veterinary support of pheasant farming in Ukraine

inferred← citeshttps://doi.org/10.3390/genes15121569openalex-snapshot

Characterization of the Complete Mitogenome of the Ring-Necked Pheasant Phasianus colchicus (Galliformes: Phasianidae) and Systematic Implications for Phasianinae Phylogenetics

inferred← citeshttps://doi.org/10.62476/abes9209openalex-snapshot

DYNAMICS OF SOME HEMATOLOGICAL PARAMETERS DEPENDING ON THE AGE OF PHEASANTS (Phasianus Colchicus Colchicus)

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