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DNA/RNA metabarcoding and morphological analysis of epipelagic copepod communities in the Izu Ridge off the southern coast of Japan

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/2017jc013049openalex-snapshot

Turbulent mixing within the K uroshio in the T okara S trait

inferredcites →https://doi.org/10.1007/bf00354322openalex-snapshot

Relationship between egg productivity and RNA/DNA ratio in Paracalanus sp. in the frontal waters of the Kurshio

inferredcites →https://doi.org/10.1007/bf00877430openalex-snapshot

Canonical correspondence analysis and related multivariate methods in aquatic ecology

inferredcites →https://doi.org/10.1007/bf02124874openalex-snapshot

Surface distributions of copepods in relation to regional upwellings around the Izu Islands in summer of 1988

inferredcites →https://doi.org/10.1007/s00227-005-0093-3openalex-snapshot

Spatio-temporal changes in diversity and community structure of planktonic copepods in Sagami Bay, Japan

inferredcites →https://doi.org/10.1007/s10872-014-0245-5openalex-snapshot

Seasonal and spatial contrast in the surface layer nutrient content around the Kuroshio along 138°E, observed between 2002 and 2013

inferredcites →https://doi.org/10.1007/s10872-017-0420-6openalex-snapshot

Short-term variation in copepod community and physical environment in the waters adjacent to the Kuroshio Current

inferredcites →https://doi.org/10.1007/s10872-018-0500-2openalex-snapshot

Enhanced vertical turbulent nitrate flux in the Kuroshio across the Izu Ridge

inferredcites →https://doi.org/10.1016/0022-0981(84)90009-1openalex-snapshot

Nucleic acids as growth rate indicators for early developmental stages of Calanus pacificus Brodsky

inferredcites →https://doi.org/10.1016/0198-0149(88)90034-9openalex-snapshot

Interactions of migrating zooplankton with shallow topography: predation by rockfishes and intensification of patchiness

inferredcites →https://doi.org/10.1016/0198-0149(92)90061-wopenalex-snapshot

A strong biological response to oceanic flow past Cobb Seamount

inferredcites →https://doi.org/10.1016/0967-0637(96)00040-4openalex-snapshot

“Seamount effects” in the zooplankton community near Cobb Seamount

inferredcites →https://doi.org/10.1016/b978-0-12-327645-2.x5000-2openalex-snapshot

ICES Zooplankton Methodology Manual

inferredcites →https://doi.org/10.1016/j.dsr.2017.07.007openalex-snapshot

Temporal and spatial changes in the copepod community during the 1974–1998 spring seasons in the Kuroshio region; a time period of profound changes in pelagic fish populations

inferredcites →https://doi.org/10.1016/j.dsr2.2007.09.007openalex-snapshot

Distribution of net-collected planktonic cnidarians along the northern Mid-Atlantic Ridge and their associations with the main water masses

inferredcites →https://doi.org/10.1016/j.dsr2.2010.09.025openalex-snapshot

A “Rosetta Stone” for metazoan zooplankton: DNA barcode analysis of species diversity of the Sargasso Sea (Northwest Atlantic Ocean)

inferredcites →https://doi.org/10.1016/j.dsr2.2013.08.007openalex-snapshot

Variability of zooplankton communities at Condor seamount and surrounding areas, Azores (NE Atlantic)

inferredcites →https://doi.org/10.1016/j.jembe.2007.07.020openalex-snapshot

Hypoxia tolerance in the copepod Calanoides carinatus and the effect of an intermediate oxygen minimum layer on copepod vertical distribution in the northern Benguela Current upwelling system and the Angola–Benguela Front

inferredcites →https://doi.org/10.1016/j.jmarsys.2003.10.008openalex-snapshot

Bio-physical coupling in the formation of zooplankton and fish aggregations over abrupt topographies

inferredcites →https://doi.org/10.1016/s0065-2881(08)60065-6openalex-snapshot

The Biology of Seamounts

inferredcites →https://doi.org/10.1016/s0967-0637(02)00038-9openalex-snapshot

Semidiurnal internal tide observed over Ohmuro-Dashi, the northern part of the Izu Ridge

inferredcites →https://doi.org/10.1029/2004gl020143openalex-snapshot

How islands stir and fertilize the upper ocean

inferredcites →https://doi.org/10.1029/2009gl038832openalex-snapshot

Evidence of enhanced turbulent dissipation in the frontogenetic Kuroshio Front thermocline

inferredcites →https://doi.org/10.1029/2011jc007292openalex-snapshot

The Kuroshio nutrient stream and its temporal variation in the East China Sea

inferredcites →https://doi.org/10.1029/96jc02938openalex-snapshot

The origin of the North Pacific Intermediate Water

inferredcites →https://doi.org/10.1093/bioinformatics/btr381openalex-snapshot

UCHIME improves sensitivity and speed of chimera detection

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

inferredcites →https://doi.org/10.1093/plankt/fbh004openalex-snapshot

Diel vertical migration of the planktonic copepods at an upwelling station north of Taiwan, western North Pacific

inferredcites →https://doi.org/10.1093/plankt/fbw023openalex-snapshot

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

inferredcites →https://doi.org/10.1111/1755-0998.12261openalex-snapshot

Environmental monitoring through protist next‐generation sequencing metabarcoding: assessing the impact of fish farming on benthic foraminifera communities

inferredcites →https://doi.org/10.1111/1755-0998.12294openalex-snapshot

A metagenetic approach for revealing community structure of marine planktonic copepods

inferredcites →https://doi.org/10.1111/fog.12423openalex-snapshot

Environmental characteristics of spawning and nursery grounds of Japanese sardine and mackerels in the Kuroshio and Kuroshio Extension area

inferredcites →https://doi.org/10.1126/science.1261605openalex-snapshot

Eukaryotic plankton diversity in the sunlit ocean

inferredcites →https://doi.org/10.1128/aem.00062-07openalex-snapshot

Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy

inferredcites →https://doi.org/10.1128/aem.00696-17openalex-snapshot

Simulated rRNA/DNA Ratios Show Potential To Misclassify Active Populations as Dormant

inferredcites →https://doi.org/10.1128/aem.01541-09openalex-snapshot

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

inferredcites →https://doi.org/10.1128/mspheredirect.00073-17openalex-snapshot

OptiClust, an Improved Method for Assigning Amplicon-Based Sequence Data to Operational Taxonomic Units

inferredcites →https://doi.org/10.1186/gb-2007-8-7-r143openalex-snapshot

Accuracy and quality of massively parallel DNA pyrosequencing

inferredcites →https://doi.org/10.1357/002224085788453868openalex-snapshot

Dynamics of temperature and chlorophyll structures above a seamount: An oceanic experiment

inferredcites →https://doi.org/10.1371/journal.pgen.1007943openalex-snapshot

Marine environmental DNA biomonitoring reveals seasonal patterns in biodiversity and identifies ecosystem responses to anomalous climatic events

inferredcites →https://doi.org/10.1371/journal.pone.0181452openalex-snapshot

Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454

inferredcites →https://doi.org/10.1371/journal.pone.0196987openalex-snapshot

Diversity and potential activity patterns of planktonic eukaryotic microbes in a mesoeutrophic coastal area (eastern English Channel)

inferredcites →https://doi.org/10.1371/journal.pone.0233189openalex-snapshot

Large-scale metabarcoding analysis of epipelagic and mesopelagic copepods in the Pacific

inferredcites →https://doi.org/10.2331/suisan.57.1241openalex-snapshot

Stomach Content Analysis of Chub Mackerel Scomber japonicus Larvae by Quantification I Method.

inferredcites →https://doi.org/10.3354/meps13539openalex-snapshot

Characterization of diversity and community structure of small planktonic copepods in the Kuroshio region off Japan using a metabarcoding approach

inferredcites →https://doi.org/10.3354/meps162173openalex-snapshot

RNA:DNA ratios as indicators of nutritional condition in the copepod Calanus finmarchicus

inferredcites →https://doi.org/10.3389/fmicb.2017.01121openalex-snapshot

Microbial Eukaryote Diversity and Activity in the Water Column of the South China Sea Based on DNA and RNA High Throughput Sequencing

inferredcites →https://doi.org/10.3389/fmicb.2018.03259openalex-snapshot

Picoeukaryotic Diversity And Activity in the Northwestern Pacific Ocean Based on rDNA and rRNA High-Throughput Sequencing

inferredcites →https://doi.org/10.3800/pbr.12.25openalex-snapshot

Nucleic acid ratio as a proxy for starvation of coastal and pelagic copepods in the North Pacific Ocean

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.3897/mbmg.8.119614zenodo-depositor-declared

Net type, tow duration and day/night sampling effects on the composition of marine zooplankton derived from metabarcoding

inferred← citeshttps://doi.org/10.1007/s00227-023-04249-6openalex-snapshot

The microcopepod family Oncaeidae: state of knowledge and perspectives

inferred← citeshttps://doi.org/10.1016/j.ejar.2023.03.003openalex-snapshot

Metabarcoding the zooplankton species of the Saudi Arabian Gulf: A study employing mock communities and two gene markers

inferred← citeshttps://doi.org/10.1016/j.marenvres.2023.105893openalex-snapshot

Biodiversity and spatial distribution of ascidian using environmental DNA metabarcoding

inferred← citeshttps://doi.org/10.1038/s41598-025-23861-8openalex-snapshot

The use of environmental RNA for inferring fish spawning behavior

inferred← citeshttps://doi.org/10.1093/icesjms/fsab198openalex-snapshot

New insights into biodiversity, biogeography, ecology, and evolution of marine zooplankton based on molecular approaches

inferred← citeshttps://doi.org/10.1111/1755-0998.70090openalex-snapshot

MetaZooGene Intercalibration Experiment ( MZG ‐ ICE ): Metabarcoding Marine Zooplankton Diversity of the Global Ocean

inferred← citeshttps://doi.org/10.22541/au.166012157.74707420/v2openalex-snapshot

Ancient environmental genomics: An Introduction

inferred← citeshttps://doi.org/10.2989/1814232x.2024.2418573openalex-snapshot

Strengthening the DNA barcode reference library for marine copepods in South Africa

inferred← citeshttps://doi.org/10.3390/jmse12112093openalex-snapshot

Advancements in DNA Metabarcoding Protocols for Monitoring Zooplankton in Marine and Brackish Environments

inferred← citeshttps://doi.org/10.5928/kaiyou.30.5_127openalex-snapshot

Decadal vision in oceanography 2021: Mid-latitude ocean

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