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Mixed-stock analysis of Atlantic herring (Clupea harengus): a tool for identifying management units and complex migration dynamics

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/ece3.4648openalex-snapshot

Can we rely on selected genetic markers for population identification? Evidence from coastal Atlantic cod

inferredcites →https://doi.org/10.1002/ece3.4768openalex-snapshot

Temporal stability and assignment power of adaptively divergent genomic regions between herring (Clupea harengus) seasonal spawning aggregations

inferredcites →https://doi.org/10.1016/j.ecoinf.2020.101154openalex-snapshot

Long-term trends in herring growth primarily linked to temperature by gradient boosting regression trees

inferredcites →https://doi.org/10.1016/j.fishres.2019.105397openalex-snapshot

Defining spatial structure for fishery stock assessment

inferredcites →https://doi.org/10.1016/j.fishres.2022.106231openalex-snapshot

Atlantic herring (Clupea harengus) population structure in the Northeast Atlantic Ocean

inferredcites →https://doi.org/10.1016/j.scitotenv.2021.150167openalex-snapshot

Forecasting shifts in habitat suitability across the distribution range of a temperate small pelagic fish under different scenarios of climate change

inferredcites →https://doi.org/10.1016/j.tree.2017.06.010openalex-snapshot

Harnessing the Power of Genomics to Secure the Future of Seafood

inferredcites →https://doi.org/10.1023/a:1018491828875openalex-snapshot

Metapopulations and the Atlantic herring

inferredcites →https://doi.org/10.1038/ncomms1845openalex-snapshot

Gene-associated markers provide tools for tackling illegal fishing and false eco-certification

inferredcites →https://doi.org/10.1038/s42003-021-01773-3openalex-snapshot

Fish heating tolerance scales similarly across individual physiology and populations

inferredcites →https://doi.org/10.1073/pnas.0402904101openalex-snapshot

Competition among fishermen and fish causes the collapse of Barents Sea capelin

inferredcites →https://doi.org/10.1073/pnas.1617728114openalex-snapshot

Parallel adaptive evolution of geographically distant herring populations on both sides of the North Atlantic Ocean

inferredcites →https://doi.org/10.1073/pnas.2009925117openalex-snapshot

Reconstruction of the birth of a male sex chromosome present in Atlantic herring

inferredcites →https://doi.org/10.1073/pnas.2025453118openalex-snapshot

Genomic stability through time despite decades of exploitation in cod on both sides of the Atlantic

inferredcites →https://doi.org/10.1073/pnas.94.17.9197openalex-snapshot

Detecting immigration by using multilocus genotypes

inferredcites →https://doi.org/10.1093/bioinformatics/btr521openalex-snapshot

adegenet 1.3-1 : new tools for the analysis of genome-wide SNP data

inferredcites →https://doi.org/10.1093/icesjms/fsaa046openalex-snapshot

A combination of genetic and phenotypic characterization of spring- and autumn-spawning herring suggests gene flow between populations

inferredcites →https://doi.org/10.1093/icesjms/fsaa152openalex-snapshot

Range-wide genetic assignment confirms long-distance oceanic migration in Atlantic salmon over half a century

inferredcites →https://doi.org/10.1093/icesjms/fsl036openalex-snapshot

Application and validation of otolith microstructure as a stock identification method in mixed Atlantic herring (Clupea harengus) stocks in the North Sea and western Baltic

inferredcites →https://doi.org/10.1093/icesjms/fsp173openalex-snapshot

Oscillating reproductive strategies of herring in the western Atlantic in response to changing environmental conditions

inferredcites →https://doi.org/10.1093/icesjms/fsp181openalex-snapshot

Lumpers or splitters? Evaluating recovery and management plans for metapopulations of herring

inferredcites →https://doi.org/10.1093/icesjms/fst064openalex-snapshot

Discrimination of western Baltic spring-spawning and central Baltic herring (Clupea harengus L.) based on growth vs. natural tag information

inferredcites →https://doi.org/10.1093/icesjms/fsu247openalex-snapshot

Gene-associated markers can assign origin in a weakly structured fish, Atlantic herring

inferredcites →https://doi.org/10.1093/icesjms/fsy028openalex-snapshot

Evidence from the past: exploitation as cause of commercial extinction of autumn-spawning herring in the Gulf of Riga, Baltic Sea

inferredcites →https://doi.org/10.1098/rsos.220453openalex-snapshot

A baseline for the genetic stock identification of Atlantic herring, Clupea harengus , in ICES Divisions 6.a, 7.b–c

inferredcites →https://doi.org/10.1098/rspb.2005.3463openalex-snapshot

Biocomplexity in a highly migratory pelagic marine fish, Atlantic herring

inferredcites →https://doi.org/10.1101/2021.02.25.432880openalex-snapshot

Can we fish on stocks that need rebuilding? Illustrating the trade-offs between stock conservation and fisheries considerations

inferredcites →https://doi.org/10.1101/gr.253435.119openalex-snapshot

A chromosome-level assembly of the Atlantic herring genome—detection of a supergene and other signals of selection

inferredcites →https://doi.org/10.1111/eva.12760openalex-snapshot

Genetic analyses reveal complex dynamics within a marine fish management area

inferredcites →https://doi.org/10.1111/eva.12942openalex-snapshot

Genetic analysis redraws the management boundaries for the European sprat

inferredcites →https://doi.org/10.1111/faf.12369openalex-snapshot

Sudden change in long‐term ocean climate fluctuations corresponds with ecosystem alterations and reduced recruitment in Norwegian spring‐spawning herring (Clupea harengus, Clupeidae)

inferredcites →https://doi.org/10.1111/j.1365-294x.2012.05639.xopenalex-snapshot

Environmental selection on transcriptome‐derived SNPs in a high gene flow marine fish, the Atlantic herring (Clupea harengus)

inferredcites →https://doi.org/10.1111/j.1467-2979.2008.00324.xopenalex-snapshot

Genetic population structure of marine fish: mismatch between biological and fisheries management units

inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00779.xopenalex-snapshot

DISENTANGLING THE EFFECTS OF EVOLUTIONARY, DEMOGRAPHIC, AND ENVIRONMENTAL FACTORS INFLUENCING GENETIC STRUCTURE OF NATURAL POPULATIONS: ATLANTIC HERRING AS A CASE STUDY

inferredcites →https://doi.org/10.1126/science.215.4533.627openalex-snapshot

Atlantic Herring: Stock Discreteness and Abundance

inferredcites →https://doi.org/10.1139/cjfas-2018-0016openalex-snapshot

Bayesian inference from the conditional genetic stock identification model

inferredcites →https://doi.org/10.1139/cjfas-2020-0336openalex-snapshot

Individual assignment of Atlantic bluefin tuna in the northwestern Atlantic Ocean using single nucleotide polymorphisms reveals an increasing proportion of migrants from the eastern Atlantic Ocean

inferredcites →https://doi.org/10.1139/cjfas-2020-0462openalex-snapshot

Estimation of conservation unit and population contribution to Chinook salmon mixed-stock fisheries in British Columbia, Canada, using direct DNA sequencing for single nucleotide polymorphisms

inferredcites →https://doi.org/10.1186/1471-2156-11-94openalex-snapshot

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

inferredcites →https://doi.org/10.1371/journal.pone.0148499openalex-snapshot

Outlier Loci Detect Intraspecific Biodiversity amongst Spring and Autumn Spawning Herring across Local Scales

inferredcites →https://doi.org/10.17895/ices.advice.5928openalex-snapshot

Herring (Clupea harengus) in subdivisions 20?24, spring spawners (Skagerrak, Kattegat, and western Baltic)

inferredcites →https://doi.org/10.17895/ices.pub.27902457openalex-snapshot

Workshop 3 on Stock Identification and Allocation of Catches of Herring to Stocks (WKSIDAC3)

inferredcites →https://doi.org/10.2144/000114018openalex-snapshot

Chelex 100 as a Medium for Simple Extraction of DNA for PCR-Based Typing from Forensic Material

inferredcites →https://doi.org/10.3354/meps10392openalex-snapshot

Recruitment decline in North Sea herring is accompanied by reduced larval growth rates

inferredcites →https://doi.org/10.3389/fmars.2021.589242openalex-snapshot

Reduced Reproductive Success of Western Baltic Herring (Clupea harengus) as a Response to Warming Winters

inferredcites →https://doi.org/10.7554/elife.12081openalex-snapshot

The genetic basis for ecological adaptation of the Atlantic herring revealed by genome sequencing

inferredcites →https://doi.org/10.7554/elife.61076openalex-snapshot

Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1111/jfb.16007zenodo-depositor-declared

Comment on “Early arrival of spring‐spawning Atlantic herring Clupea harengus at their spawning ground in the Kiel Fjord , western Baltic , relates to increasing winter seawater temperature” by Ory et al. (2024)

inferred← citeshttps://doi.org/10.1002/eap.70273openalex-snapshot

Methods to estimate marine functional connectivity: A primer

inferred← citeshttps://doi.org/10.1002/ece3.73085openalex-snapshot

Patterns of Population Genomic Variation and Evolutionary History of European Hake in the Northeastern Atlantic

inferred← citeshttps://doi.org/10.1002/ecog.08354openalex-snapshot

Reduced size of larvae and small fish linked to warming and reduced prey density

inferred← citeshttps://doi.org/10.1002/lom3.10551openalex-snapshot

A staging system for Atlantic herring ( Clupea harengus ) larvae based on external morphology and skeletal development

inferred← citeshttps://doi.org/10.1007/s11160-025-09969-0openalex-snapshot

Regional synchrony in weight-at-age variability among pelagic fish stocks linked to competition and hydroclimatic factors

inferred← citeshttps://doi.org/10.1016/j.fishres.2024.106973openalex-snapshot

Predation on Baltic sea yolk-sac herring larvae (Clupea harengus) by the invasive ctenophore Mnemiopsis leidyi

inferred← citeshttps://doi.org/10.1016/j.fishres.2025.107302openalex-snapshot

Below and beyond the species: DNA tools for geographic traceability analysis of cod products in European markets

inferred← citeshttps://doi.org/10.1016/j.fishres.2026.107648openalex-snapshot

Challenges in mixed-stock fishery management: The case of the European whitefish in Kvarken, northern Baltic Sea

inferred← citeshttps://doi.org/10.1016/j.fishres.2026.107822openalex-snapshot

Shrinkage effect of freezing on herring and sprat in the Baltic Sea

inferred← citeshttps://doi.org/10.1038/s41598-024-60762-8openalex-snapshot

Harnessing eDNA metabarcoding to investigate fish community composition and its seasonal changes in the Oslo fjord

inferred← citeshttps://doi.org/10.1063/5.0208904openalex-snapshot

A comprehensive survey of predicting stock market prices: An analysis of traditional statistical models and machine-learning techniques

inferred← citeshttps://doi.org/10.1080/23308249.2025.2458869openalex-snapshot

Worldwide Appraisal of Knowledge Gaps in the Space Usage of Small Pelagic Fish: Highlights Across Stock Uncertainties and Research Priorities

inferred← citeshttps://doi.org/10.1093/icesjms/fsae102openalex-snapshot

Spatio-temporal larval abundance dynamics of a depleted Baltic Sea herring ecotype

inferred← citeshttps://doi.org/10.1093/icesjms/fsae114openalex-snapshot

Genetic monitoring uncovers long-distance marine feeding coupled with strong spatial segregation in sea trout (Salmo trutta L.) consistent at annual and decadal time scales

inferred← citeshttps://doi.org/10.1093/icesjms/fsaf064openalex-snapshot

High-density SNP panel provides little evidence for population structure in European sea bass (Dicentrarchus labrax) in waters surrounding the UK

inferred← citeshttps://doi.org/10.1093/icesjms/fsag006openalex-snapshot

A century of genetics in ICES Journal of Marine Science

inferred← citeshttps://doi.org/10.1101/2024.07.11.603078openalex-snapshot

The Once and Future Fish: 1300 years of Atlantic herring population structure and demography revealed through ancient DNA and mixed-stock analysis

inferred← citeshttps://doi.org/10.1111/1755-0998.14040openalex-snapshot

Development of SNP Panels from Low‐Coverage Whole Genome Sequencing ( lcWGS ) to Support Indigenous Fisheries for Three Salmonid Species in Northern Canada

inferred← citeshttps://doi.org/10.1111/ddi.70056openalex-snapshot

Connectivity and Population Structure in a Marginal Sea—A Review

inferred← citeshttps://doi.org/10.1111/eva.70030openalex-snapshot

Genetic Stock Identification Reveals Mismatches Between Management Areas and Population Genetic Structure in a Migratory Pelagic Fish

inferred← citeshttps://doi.org/10.1111/faf.12872openalex-snapshot

Rebuilding and Reference Points Under Compensatory and Depensatory Recruitment: A Meta‐Analysis of Northeast Atlantic Fish Stocks

inferred← citeshttps://doi.org/10.1111/fme.70037openalex-snapshot

Stock Rebuilding in a Mixed‐Population Fishery Context: The Case of North Sea and Western Baltic Herring

inferred← citeshttps://doi.org/10.1111/fog.12730openalex-snapshot

Marine Heatwaves and Climate‐Driven Warming Impact Availability of Sardine Subpopulations to Northeast Pacific Fishing Ports

inferred← citeshttps://doi.org/10.1111/gcb.70010openalex-snapshot

The Once and Future Fish: Assessing a Millennium of Atlantic Herring Exploitation Through Mixed‐Stock Analysis and Ancient DNA

inferred← citeshttps://doi.org/10.1111/jfb.70153openalex-snapshot

Genes, fish and fisheries: translating science into policy

inferred← citeshttps://doi.org/10.1111/jfb.70400openalex-snapshot

Intra‐annual energy density cycles of spring‐ and fall‐spawning Atlantic herring Clupea harengus reveal different reproductive allocation tactics

inferred← citeshttps://doi.org/10.1111/mec.17367openalex-snapshot

Genomic insights on conservation priorities for North Sea houting and European lake whitefish ( Coregonus spp.)

inferred← citeshttps://doi.org/10.1111/mec.17707openalex-snapshot

Genomics‐Enabled Mixed‐Stock Analysis Uncovers Intraspecific Migratory Complexity and Detects Unsampled Populations in a Harvested Fish

inferred← citeshttps://doi.org/10.1126/sciadv.adz6746openalex-snapshot

Direct evidence of natal homing in an Atlantic herring metapopulation

inferred← citeshttps://doi.org/10.1126/science.aeg0333openalex-snapshot

Beyond the scales: Marine archaeogenomics for the conservation and restoration of fisheries

inferred← citeshttps://doi.org/10.1139/cjfas-2024-0258openalex-snapshot

Mixed-stock analysis reveals long-distance movements and few populations with large harvest contributions in lake-migratory brook trout

inferred← citeshttps://doi.org/10.1146/annurev-animal-021122-102933openalex-snapshot

How Fish Population Genomics Can Promote Sustainable Fisheries: A Road Map

inferred← citeshttps://doi.org/10.1186/s12864-024-10380-5openalex-snapshot

Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.3354/meps14368openalex-snapshot

Resolving the variability in habitat use by juvenile small pelagic fish in a major tidal system by continuous echosounder measurements

inferred← citeshttps://doi.org/10.3389/fmars.2023.978694openalex-snapshot

Analysis of reproductive traits reveals complex population dynamics on a small geographical scale in Atlantic herring

inferred← citeshttps://doi.org/10.3390/ijms27198612openalex-snapshot

Population Genomics Refines Population Structure and Individual Stock Assignment in Atlantic and Mediterranean Swordfish (Xiphias gladius)

inferred← citeshttps://doi.org/10.6084/m9.figshare.25801012openalex-snapshot

Additional file 1 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.6084/m9.figshare.25801146openalex-snapshot

Additional file 2 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.6084/m9.figshare.26719110openalex-snapshot

Additional file 3 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.6084/m9.figshare.26719113openalex-snapshot

Additional file 4 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.6084/m9.figshare.26719116openalex-snapshot

Additional file 5 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.6084/m9.figshare.26719119openalex-snapshot

Additional file 6 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.6084/m9.figshare.26719122openalex-snapshot

Additional file 7 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.6084/m9.figshare.26719125openalex-snapshot

Additional file 8 of Copy number variation and elevated genetic diversity at immune trait loci in Atlantic and Pacific herring

inferred← citeshttps://doi.org/10.64898/2026.01.31.703008openalex-snapshot

Establishing a baseline for standardised genetic monitoring of Atlantic cod ( Gadus morhua ) in Sweden

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