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ddRAD Sequencing Sheds Light on Low Interspecific and High Intraspecific mtDNA Divergences in Two Groups of Caddisflies

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1093/gbe/evab013zenodo-depositor-declared
Draft Genome Assemblies and Annotations of Agrypnia vestita Walker, and Hesperophylax magnus Banks Reveal Substantial Repetitive Element Expansion in Tube Case-Making Caddisflies (Insecta: Trichoptera)
inferredcites →https://doi.org/10.1093/gigascience/zenodo-depositor-declared
inferredcites →https://doi.org/10.5061/dryad.b883mf8zenodo-depositor-declared
Data from: The conundrum of species delimitation: a genomic perspective on a mitogenetically super-variable butterfly
inferredcites →https://doi.org/10.1002/ece3.3706openalex-snapshot
Genome‐wide single‐nucleotide polymorphism data reveal cryptic species within cryptic freshwater snail species—The case of the Ancylus fluviatilis species complex
inferredcites →https://doi.org/10.1016/j.ympev.2016.05.028openalex-snapshot
Genome-wide data help identify an avian species-level lineage that is morphologically and vocally cryptic
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nrg.2015.28openalex-snapshot
Harnessing the power of RADseq for ecological and evolutionary genomics
inferredcites →https://doi.org/10.1046/j.1471-8286.2003.00566.xopenalex-snapshot
distruct : a program for the graphical display of population structure
inferredcites →https://doi.org/10.1073/pnas.1621504114openalex-snapshot
Nuclear genomes distinguish cryptic species suggested by their DNA barcodes and ecology
inferredcites →https://doi.org/10.1080/14772000.2020.1730474openalex-snapshot
Genome-informed integrative taxonomic description of three cryptic species in the earthworm genus Carpetania (Oligochaeta, Hormogastridae)
inferredcites →https://doi.org/10.1086/684850openalex-snapshot
Phylogeographic origin ofApatania zonella(Trichoptera) in Iceland
inferredcites →https://doi.org/10.1093/bioinformatics/btm233openalex-snapshot
CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
inferredcites →https://doi.org/10.1093/bioinformatics/btu121openalex-snapshot
PyRAD: assembly of de novo RADseq loci for phylogenetic analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btu530openalex-snapshot
Quartet Inference from SNP Data Under the Coalescent Model
inferredcites →https://doi.org/10.1093/bioinformatics/btz966openalex-snapshot
ipyrad: Interactive assembly and analysis of RADseq datasets
inferredcites →https://doi.org/10.1093/gbe/evz264openalex-snapshot
Annotated Draft Genomes of Two Caddisfly Species Plectrocnemia conspersa CURTIS and Hydropsyche tenuis NAVAS (Insecta: Trichoptera)
inferredcites →https://doi.org/10.1093/genetics/155.2.945openalex-snapshot
Inference of Population Structure Using Multilocus Genotype Data
inferredcites →https://doi.org/10.1093/gigascience/giy143openalex-snapshot
The genome of an underwater architect, the caddisfly Stenopsyche tienmushanensis Hwang (Insecta: Trichoptera)
inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot
Testing for Ancient Admixture between Closely Related Populations
inferredcites →https://doi.org/10.1093/molbev/mst024openalex-snapshot
Ultrafast Approximation for Phylogenetic Bootstrap
inferredcites →https://doi.org/10.1093/molbev/msw054openalex-snapshot
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets
inferredcites →https://doi.org/10.1093/nar/gkw256openalex-snapshot
W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis
inferredcites →https://doi.org/10.1093/sysbio/syw044openalex-snapshot
Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera
inferredcites →https://doi.org/10.1093/sysbio/syy029openalex-snapshot
Information Dropout Patterns in Restriction Site Associated DNA Phylogenomics and a Comparison with Multilocus Sanger Data in a Species-Rich Moth Genus
inferredcites →https://doi.org/10.1098/rspb.2002.2218openalex-snapshot
Biological identifications through DNA barcodes
inferredcites →https://doi.org/10.1098/rspb.2005.3056openalex-snapshot
Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts
inferredcites →https://doi.org/10.1098/rspb.2010.1089openalex-snapshot
Complete DNA barcode reference library for a country's butterfly fauna reveals high performance for temperate Europe
inferredcites →https://doi.org/10.1098/rspb.2019.1311openalex-snapshot
The conundrum of species delimitation: a genomic perspective on a mitogenetically super-variable butterfly
inferredcites →https://doi.org/10.1098/rstb.2016.0025openalex-snapshot
The Trichoptera barcode initiative: a strategy for generating a species-level Tree of Life
inferredcites →https://doi.org/10.1111/1755-0998.12282openalex-snapshot
DNA barcoding reveals 24 distinct lineages as cryptic bird species candidates in and around the J apanese A rchipelago
inferredcites →https://doi.org/10.1111/1755-0998.12683openalex-snapshot
A DNA barcode library for Germany′s mayflies, stoneflies and caddisflies (Ephemeroptera, Plecoptera and Trichoptera)
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02553.xopenalex-snapshot
Detecting the number of clusters of individuals using the software structure : a simulation study
inferredcites →https://doi.org/10.1111/mec.15153openalex-snapshot
A mirage of cryptic species: Genomics uncover striking mitonuclear discordance in the butterfly Thymelicus sylvestris
inferredcites →https://doi.org/10.1146/annurev.ecolsys.34.011802.132421openalex-snapshot
Species-Level Paraphyly and Polyphyly: Frequency, Causes, and Consequences, with Insights from Animal Mitochondrial DNA
inferredcites →https://doi.org/10.1163/187631285x00252openalex-snapshot
Norwegian Apatania Kolenati (Trichoptera: Limnephiiidae): identification of larvae and aspects of their biology in a high-altitude zone
inferredcites →https://doi.org/10.1186/1471-2148-13-90openalex-snapshot
Large variation in mitochondrial DNA of sexual and parthenogenetic Dahlica triquetrella (Lepidoptera: Psychidae) shows multiple origins of parthenogenesis
inferredcites →https://doi.org/10.1186/s12859-017-1593-0openalex-snapshot
StrAuto: automation and parallelization of STRUCTURE analysis
inferredcites →https://doi.org/10.1371/journal.pone.0017134openalex-snapshot
DNA Barcoding the Geometrid Fauna of Bavaria (Lepidoptera): Successes, Surprises, and Questions
inferredcites →https://doi.org/10.1371/journal.pone.0036514openalex-snapshot
Wolbachia and DNA Barcoding Insects: Patterns, Potential, and Problems
inferredcites →https://doi.org/10.1371/journal.pone.0037135openalex-snapshot
Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species
inferredcites →https://doi.org/10.1371/journal.pone.0092797openalex-snapshot
A Transcontinental Challenge — A Test of DNA Barcode Performance for 1,541 Species of Canadian Noctuoidea (Lepidoptera)
inferredcites →https://doi.org/10.1371/journal.pone.0108651openalex-snapshot
Barcoding Beetles: A Regional Survey of 1872 Species Reveals High Identification Success and Unusually Deep Interspecific Divergences
inferredcites →https://doi.org/10.1371/journal.pone.0115774openalex-snapshot
Testing DNA Barcode Performance in 1000 Species of European Lepidoptera: Large Geographic Distances Have Small Genetic Impacts
inferredcites →https://doi.org/10.1371/journal.pone.0161449openalex-snapshot
A DNA Barcode Library for North American Pyraustinae (Lepidoptera: Pyraloidea: Crambidae)
inferredcites →https://doi.org/10.1371/journal.pone.0162624openalex-snapshot
Towards a DNA Barcode Reference Database for Spiders and Harvestmen of Germany
inferredcites →https://doi.org/10.1371/journal.pone.0178548openalex-snapshot
Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America
inferredcites →https://doi.org/10.2307/4472openalex-snapshot
Atlas of European Trichoptera
inferredcites →https://doi.org/10.33338/ef.7386openalex-snapshot
A taxonomic study of the caddisfly Oxyethira falcata Morton, 1893 (Trichoptera: Hydroptilidae) using genital morphology and DNA barcoding
inferredcites →https://doi.org/10.33338/ef.84493openalex-snapshot
DNA-barcoding clarifies species definitions of Finnish Apatania (Trichoptera: Apataniidae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.5519.4.3zenodo-depositor-declared
DNA barcode polymorphism within a common widespread rove beetle Quedius molochinus (Coleoptera: Staphylinidae)
inferred← citeshttps://doi.org/10.1002/ece3.8741openalex-snapshot
Associating life stages and sexes of Nearctic Polycentropus Curtis, 1835 (Trichoptera: Polycentropodidae) using mitochondrial DNA barcoding
inferred← citeshttps://doi.org/10.1007/s12526-024-01446-4openalex-snapshot
Diversity of squat lobsters on coral reefs in Guam, Mariana Islands, with the description of two new species and notes on their natural history
inferred← citeshttps://doi.org/10.1016/j.jcz.2026.08.004openalex-snapshot
Updating Chrysogasterini (Diptera: Syrphidae): A new genus, a new species and new synonymies from Western Palaearctic
inferred← citeshttps://doi.org/10.1093/ornithology/ukaf047openalex-snapshot
Genomic data reveal mixed support for the current subspecies designations in the Megascops asio (Eastern Screech-Owl)
inferred← citeshttps://doi.org/10.1111/cla.12520openalex-snapshot
Morphology, nuclear SNPs and mate selection reveal that COI barcoding overestimates species diversity in a Mediterranean freshwater amphipod by an order of magnitude
inferred← citeshttps://doi.org/10.1139/gen-2022-0021openalex-snapshot
Assessing population genetic structure of three New Zealand stream insects using mitochondrial and nuclear DNA markers
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1497301/v1openalex-snapshot
COI is not enough: integrative taxonomy reveals striking overestimation of species diversity in a Mediterranean freshwater amphipod
inferred← citeshttps://doi.org/10.21203/rs.3.rs-1497301/v2openalex-snapshot
COI is not always right: integrative taxonomy reveals striking overestimation of species diversity in a Mediterranean freshwater amphipod
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