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Is Phylogeographic Congruence Predicted by Historical Habitat Stability, or Ecological Co-associations?

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.5061/dryad.5hr7f31zenodo-depositor-declared

Data from: The role of glacial‐interglacial climate change in shaping the genetic structure of eastern subterranean termites in the southern Appalachian Mountains, USA

inferredcites →https://doi.org/10.1002/ajb2.1248openalex-snapshot

Phylogeography of a widespread eastern North American shrub, Viburnum lantanoides

inferredcites →https://doi.org/10.1002/ece3.1388openalex-snapshot

Naturally rare versus newly rare: demographic inferences on two timescales inform conservation of Galápagos giant tortoises

inferredcites →https://doi.org/10.1002/ece3.5065openalex-snapshot

The role of glacial‐interglacial climate change in shaping the genetic structure of eastern subterranean termites in the southern Appalachian Mountains, USA

inferredcites →https://doi.org/10.1002/joc.1276openalex-snapshot

Very high resolution interpolated climate surfaces for global land areas

inferredcites →https://doi.org/10.1007/978-3-319-75937-1_14openalex-snapshot

Biotic Interactions Between Saproxylic Insect Species

inferredcites →https://doi.org/10.1007/bf00182389openalex-snapshot

Analyzing the mosaic structure of genes

inferredcites →https://doi.org/10.1007/bf00317345openalex-snapshot

The checkerboard score and species distributions

inferredcites →https://doi.org/10.1007/bf02101694openalex-snapshot

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

inferredcites →https://doi.org/10.1007/s00040-016-0475-1openalex-snapshot

True syntopy between chromosomal races of the Cryptocercus punctulatus wood-roach species complex

inferredcites →https://doi.org/10.1007/s10841-018-0107-3openalex-snapshot

Cryptic diversity in the southern Appalachian Mountains: genetic data reveal that the red centipede, Scolopocryptops sexspinosus, is a species complex

inferredcites →https://doi.org/10.1007/s10980-019-00949-xopenalex-snapshot

Regional replication of landscape genetics analyses of the Mississippi slimy salamander, Plethodon mississippi

inferredcites →https://doi.org/10.1016/b978-1-4832-3211-9.50009-7openalex-snapshot

Evolution of Protein Molecules

inferredcites →https://doi.org/10.1016/j.cbpa.2007.01.024openalex-snapshot

Effects of temperature and oxygen availability on water loss and carbon dioxide release in two sympatric saproxylic invertebrates

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Inbreeding Depression Is Purged in the Invasive Insect Harmonia axyridis

inferredcites →https://doi.org/10.1016/j.fooweb.2018.e00112openalex-snapshot

Trophic interactions among dead-wood-dependent forest arthropods in the southern Appalachian Mountains, USA

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Surfing during population expansions promotes genetic revolutions and structuration

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Inferring biotic interactions from proxies

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Multigenic phylogeographic divergence in the paleoendemic southern Appalachian opilionid Fumontana deprehendor Shear (Opiliones, Laniatores, Triaenonychidae)

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Basic Local Alignment Search Tool

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Paleoecology and coalescence: phylogeographic analysis of hypotheses from the fossil record

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Pattern Recognition and Neural Networks

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Biodiversity in Dead Wood

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Random Forests

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jModelTest 2: more models, new heuristics and parallel computing

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Comparative phylogeography as an integrative approach to historical biogeography

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Testing Pleistocene refugia theory: phylogeographical analysis of Desmognathus wrighti, a high‐elevation salamander in the southern Appalachians

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The burgeoning field of statistical phylogeography

inferredcites →https://doi.org/10.1073/pnas.0505754103openalex-snapshot

Habitat history improves prediction of biodiversity in rainforest fauna

inferredcites →https://doi.org/10.1073/pnas.081068098openalex-snapshot

Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach

inferredcites →https://doi.org/10.1073/pnas.092538699openalex-snapshot

Reconciling paleodistribution models and comparative phylogeography in the Wet Tropics rainforest land snail Gnarosophia bellendenkerensis (Brazier 1875)

inferredcites →https://doi.org/10.1073/pnas.1730921100openalex-snapshot

Genetic footprints of demographic expansion in North America, but not Amazonia, during the Late Quaternary

inferredcites →https://doi.org/10.1073/pnas.241370698openalex-snapshot

Evaluation of methods for detecting recombination from DNA sequences: Computer simulations

inferredcites →https://doi.org/10.1080/24701394.2021.1882443openalex-snapshot

Phylogeography and demographic expansion in the widely distributed horned passalus beetle, Odontotaenius disjunctus (coleoptera: Passalidae)

inferredcites →https://doi.org/10.1086/303362openalex-snapshot

Comparative Phylogeography of Mesoamerican Highland Rodents: Concerted versus Independent Response to Past Climatic Fluctuations

inferredcites →https://doi.org/10.1086/319501openalex-snapshot

A New Statistical Method for Haplotype Reconstruction from Population Data

inferredcites →https://doi.org/10.1089/aid.1995.11.1423openalex-snapshot

Identification of Breakpoints in Intergenotypic Recombinants of HIV Type 1 by Bootscanning

inferredcites →https://doi.org/10.1093/bioinformatics/16.6.562openalex-snapshot

RDP: detection of recombination amongst aligned sequences

inferredcites →https://doi.org/10.1093/bioinformatics/bts199openalex-snapshot

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

inferredcites →https://doi.org/10.1093/biomet/76.2.297openalex-snapshot

Regression and Time Series Model Selection in Small Samples

inferredcites →https://doi.org/10.1093/genetics/123.3.585openalex-snapshot

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

inferredcites →https://doi.org/10.1093/genetics/131.2.479openalex-snapshot

Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data.

inferredcites →https://doi.org/10.1093/genetics/147.2.915openalex-snapshot

Statistical Tests of Neutrality of Mutations Against Population Growth, Hitchhiking and Background Selection

inferredcites →https://doi.org/10.1093/molbev/mst028openalex-snapshot

Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

inferredcites →https://doi.org/10.1093/molbev/mst197openalex-snapshot

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

inferredcites →https://doi.org/10.1093/molbev/msu187openalex-snapshot

Detecting Concerted Demographic Response across Community Assemblages Using Hierarchical Approximate Bayesian Computation

inferredcites →https://doi.org/10.1093/molbev/msw260openalex-snapshot

PartitionFinder 2: New Methods for Selecting Partitioned Models of Evolution for Molecular and Morphological Phylogenetic Analyses

inferredcites →https://doi.org/10.1093/molbev/msx248openalex-snapshot

DnaSP 6: DNA Sequence Polymorphism Analysis of Large Data Sets

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a004034openalex-snapshot

Statistical Properties of New Neutrality Tests Against Population Growth

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040567openalex-snapshot

Statistical tests for detecting gene conversion.

inferredcites →https://doi.org/10.1093/sysbio/syx001openalex-snapshot

PHRAPL: Phylogeographic Inference Using Approximate Likelihoods

inferredcites →https://doi.org/10.1093/sysbio/syy032openalex-snapshot

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

inferredcites →https://doi.org/10.1093/ve/vev003openalex-snapshot

RDP4: Detection and analysis of recombination patterns in virus genomes

inferredcites →https://doi.org/10.1098/rsbl.2007.0102openalex-snapshot

Death of an order: a comprehensive molecular phylogenetic study confirms that termites are eusocial cockroaches

inferredcites →https://doi.org/10.1098/rspb.2008.1622openalex-snapshot

Identification and dynamics of a cryptic suture zone in tropical rainforest

inferredcites →https://doi.org/10.1098/rspb.2014.1461openalex-snapshot

Prediction of phylogeographic endemism in an environmentally complex biome

inferredcites →https://doi.org/10.1108/meq.2013.08324daa.011openalex-snapshot

Managing Forests as Complex Adaptive Systems – Building Resilience to the Challenge of Global Change

inferredcites →https://doi.org/10.1111/1365-2435.12666openalex-snapshot

A common framework for identifying linkage rules across different types of interactions

inferredcites →https://doi.org/10.1111/1365-2656.12834openalex-snapshot

On the development of a predictive functional trait approach for studying terrestrial arthropods

inferredcites →https://doi.org/10.1111/1755-0998.12686openalex-snapshot

multi‐dice : r package for comparative population genomic inference under hierarchical co‐demographic models of independent single‐population size changes

inferredcites →https://doi.org/10.1111/2041-210x.12261openalex-snapshot

ENM eval: An R package for conducting spatially independent evaluations and estimating optimal model complexity for Maxent ecological niche models

inferredcites →https://doi.org/10.1111/2041-210x.12363openalex-snapshot

Inferring species interactions in ecological communities: a comparison of methods at different levels of complexity

inferredcites →https://doi.org/10.1111/brv.12158openalex-snapshot

Wood decomposition as influenced by invertebrates

inferredcites →https://doi.org/10.1111/ecog.01892openalex-snapshot

A network approach for inferring species associations from co‐occurrence data

inferredcites →https://doi.org/10.1111/ecog.02671openalex-snapshot

ecospat: an R package to support spatial analyses and modeling of species niches and distributions

inferredcites →https://doi.org/10.1111/een.12934openalex-snapshot

Stable isotope ecology in insects: a review

inferredcites →https://doi.org/10.1111/ele.12043openalex-snapshot

Species interactions constrain geographic range expansion over evolutionary time

inferredcites →https://doi.org/10.1111/ele.13525openalex-snapshot

Co‐occurrence is not evidence of ecological interactions

inferredcites →https://doi.org/10.1111/evo.12916openalex-snapshot

Community trees: Identifying codiversification in the Páramo dipteran community

inferredcites →https://doi.org/10.1111/evo.12924openalex-snapshot

Phylogeographic concordance factors quantify phylogeographic congruence among co-distributed species in theSarracenia alatapitcher plant system

inferredcites →https://doi.org/10.1111/evo.13606openalex-snapshot

Genomic data reject the hypothesis of sympatric ecological speciation in a clade of Desmognathus salamanders

inferredcites →https://doi.org/10.1111/geb.12759openalex-snapshot

Biotic interactions in species distribution modelling: 10 questions to guide interpretation and avoid false conclusions

inferredcites →https://doi.org/10.1111/j.1365-2486.2009.02000.xopenalex-snapshot

Uncertainty in ensemble forecasting of species distribution

inferredcites →https://doi.org/10.1111/j.1365-2699.2007.01814.xopenalex-snapshot

Distribution modelling and statistical phylogeography: an integrative framework for generating and testing alternative biogeographical hypotheses

inferredcites →https://doi.org/10.1111/j.1365-294x.2004.02340.xopenalex-snapshot

Phylogeography recapitulates topography: very fine‐scale local endemism of a saproxylic ‘giant’ springtail at Tallaganda in the Great Dividing Range of south–east Australia

inferredcites →https://doi.org/10.1111/j.1365-294x.2006.03107.xopenalex-snapshot

A tale of two flatties: different responses of two terrestrial flatworms to past environmental climatic fluctuations at Tallaganda in montane southeastern Australia

inferredcites →https://doi.org/10.1111/j.1365-294x.2008.04042.xopenalex-snapshot

Inferring the past to predict the future: climate modelling predictions and phylogeography for the freshwater gastropod Radix balthica (Pulmonata, Basommatophora)

inferredcites →https://doi.org/10.1111/j.1365-294x.2010.04879.xopenalex-snapshot

Mapping amphibian contact zones and phylogeographical break hotspots across the United States

inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05286.xopenalex-snapshot

Competitive exclusion: phylogeography’s ‘elephant in the room’?

inferredcites →https://doi.org/10.1111/j.1558-5646.1984.tb05657.xopenalex-snapshot

ESTIMATING F -STATISTICS FOR THE ANALYSIS OF POPULATION STRUCTURE

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00349.xopenalex-snapshot

FINE-SCALE PHYLOGEOGRAPHIC CONGRUENCE DESPITE DEMOGRAPHIC INCONGRUENCE IN TWO LOW-MOBILITY SAPROXYLIC SPRINGTAILS

inferredcites →https://doi.org/10.1111/j.1558-5646.2008.00500.xopenalex-snapshot

DISTINGUISHING COEVOLUTION FROM COVICARIANCE IN AN OBLIGATE POLLINATION MUTUALISM: ASYNCHRONOUS DIVERGENCE IN JOSHUA TREE AND ITS POLLINATORS

inferredcites →https://doi.org/10.1111/j.1600-0587.2008.05742.xopenalex-snapshot

BIOMOD – a platform for ensemble forecasting of species distributions

inferredcites →https://doi.org/10.1111/j.1600-0587.2011.07103.xopenalex-snapshot

How do species interactions affect species distribution models?

inferredcites →https://doi.org/10.1111/j.1755-0998.2010.02847.xopenalex-snapshot

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

inferredcites →https://doi.org/10.1111/jbi.12679openalex-snapshot

Range‐wide phylogeography of the four‐toed salamander: out of Appalachia and into the glacial aftermath

inferredcites →https://doi.org/10.1111/jbi.12973openalex-snapshot

Biogeographical evidence for common vicariance and rare dispersal in a southern Appalachian harvestman (Sabaconidae, Sabacon cavicolens)

inferredcites →https://doi.org/10.1111/jbi.12992openalex-snapshot

Strong spatial‐genetic congruence between a wood‐feeding cockroach and its bacterial endosymbiont, across a topographically complex landscape

inferredcites →https://doi.org/10.1111/jbi.13503openalex-snapshot

Extending phylogeography to account for lineage fusion

inferredcites →https://doi.org/10.1111/jbi.13932openalex-snapshot

Efficient summary statistics for detecting lineage fusion from phylogeographic datasets

inferredcites →https://doi.org/10.1111/mec.12318openalex-snapshot

Ecological coassociations influence species' responses to past climatic change: an example from a S onoran D esert bark beetle

inferredcites →https://doi.org/10.1111/mec.13447openalex-snapshot

The aggregate site frequency spectrum for comparative population genomic inference

inferredcites →https://doi.org/10.1111/mec.15045openalex-snapshot

Isolation by instability: Historical climate change shapes population structure and genomic divergence of treefrogs in the Neotropical Cerrado savanna

inferredcites →https://doi.org/10.1111/mec.15049openalex-snapshot

Divergent mitochondrial lineages arose within a large, panmictic population of the Savannah sparrow (Passerculus sandwichensis)

inferredcites →https://doi.org/10.1111/mec.15483openalex-snapshot

Integrative species delimitation reveals cryptic diversity in the southern Appalachian Antrodiaetus unicolor (Araneae: Antrodiaetidae) species complex

inferredcites →https://doi.org/10.1111/mec.15548openalex-snapshot

Incorporating interspecific interactions into phylogeographic models: A case study with Californian oaks

inferredcites →https://doi.org/10.1126/science.1166955openalex-snapshot

Stability Predicts Genetic Diversity in the Brazilian Atlantic Forest Hotspot

inferredcites →https://doi.org/10.1126/science.1237184openalex-snapshot

Climate Change and the Past, Present, and Future of Biotic Interactions

inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150507openalex-snapshot

Saproxylic Insect Ecology and the Sustainable Management of Forests

inferredcites →https://doi.org/10.1146/annurev.ecolsys.38.091206.095702openalex-snapshot

Statistical Phylogeography

inferredcites →https://doi.org/10.1146/annurev.es.22.110191.000555openalex-snapshot

The Guild Concept and the Structure of Ecological Communities

inferredcites →https://doi.org/10.1186/1471-2105-12-1openalex-snapshot

MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity

inferredcites →https://doi.org/10.1186/1471-2105-12-81openalex-snapshot

Appearance frequency modulated gene set enrichment testing

inferredcites →https://doi.org/10.1186/1471-2148-10-118openalex-snapshot

Nuclear gene phylogeography using PHASE: dealing with unresolved genotypes, lost alleles, and systematic bias in parameter estimation

inferredcites →https://doi.org/10.1186/1471-2148-8-289openalex-snapshot

Bayesian inference of population size history from multiple loci

inferredcites →https://doi.org/10.1186/1471-2148-9-25openalex-snapshot

Pleistocene glacial refugia across the Appalachian Mountains and coastal plain in the millipede genus Narceus: Evidence from population genetic, phylogeographic, and paleoclimatic data

inferredcites →https://doi.org/10.1201/9781420007978.ch7openalex-snapshot

Phylogeography in Historical Biogeography

inferredcites →https://doi.org/10.1371/journal.pcbi.1006650openalex-snapshot

BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis

inferredcites →https://doi.org/10.1371/journal.pone.0025628openalex-snapshot

Comparative Phylogeography of a Coevolved Community: Concerted Population Expansions in Joshua Trees and Four Yucca Moths

inferredcites →https://doi.org/10.1371/journal.pone.0062992openalex-snapshot

The Confounding Effect of Population Structure on Bayesian Skyline Plot Inferences of Demographic History

inferredcites →https://doi.org/10.1554/04-661.1openalex-snapshot

INVESTIGATING THE EVOLUTIONARY HISTORY OF THE PACIFIC NORTHWEST MESIC FOREST ECOSYSTEM: HYPOTHESIS TESTING WITHIN A COMPARATIVE PHYLOGEOGRAPHIC FRAMEWORK

inferredcites →https://doi.org/10.1636/a11-49.1openalex-snapshot

Extreme mitochondrial population subdivision in southern Appalachian paleoendemic spiders (Araneae: Hypochilidae: Hypochilus), with implications for species delimitation

inferredcites →https://doi.org/10.1890/0012-9658(2000)081[2606:nmaosc]2.0.co;2openalex-snapshot

NULL MODEL ANALYSIS OF SPECIES CO-OCCURRENCE PATTERNS

inferredcites →https://doi.org/10.1890/04-1036openalex-snapshot

MOLECULAR INDICATORS OF TREE MIGRATION CAPACITY UNDER RAPID CLIMATE CHANGE

inferredcites →https://doi.org/10.1890/1051-0761(1998)008[0921:piocob]2.0.co;2openalex-snapshot

PALEOECOLOGICAL INSIGHTS ON CONSERVATION OF BIODIVERSITY:A FOCUS ON SPECIES, ECOSYSTEMS, AND LANDSCAPES

inferredcites →https://doi.org/10.2307/1447629openalex-snapshot

Salamanders of the United States and Canada

inferredcites →https://doi.org/10.2307/177478openalex-snapshot

Null Model Analysis of Species Co-Occurrence Patterns

inferredcites →https://doi.org/10.2307/1935534openalex-snapshot

The Anolis Lizards of Bimini: Resource Partitioning in a Complex Fauna

inferredcites →https://doi.org/10.2307/1943577openalex-snapshot

Vegetation of the Great Smoky Mountains

inferredcites →https://doi.org/10.2307/1948647openalex-snapshot

The Centipedes of the Chicago Area with Special Reference to Their Ecology

inferredcites →https://doi.org/10.2307/2412483openalex-snapshot

The Changing Flora and Fauna of Britain

inferredcites →https://doi.org/10.2307/j.ctv1nzfgj7openalex-snapshot

Phylogeography

inferredcites →https://doi.org/10.2307/jj.41003446.10openalex-snapshot

Managing Forests as Complex Adaptive Systems

inferredcites →https://doi.org/10.32614/r.manualsopenalex-snapshot

R: A Language and Environment for Statistical Computing

inferredcites →https://doi.org/10.3390/insects10010033openalex-snapshot

Ecological Drivers of Species Distributions and Niche Overlap for Three Subterranean Termite Species in the Southern Appalachian Mountains, USA

inferredcites →https://doi.org/10.3390/insects10060159openalex-snapshot

Two Divergent Genetic Lineages within the Horned Passalus Beetle, Odontotaenius disjunctus (Coleoptera: Passalidae): An Emerging Model for Insect Behavior, Physiology, and Microbiome Research

inferredcites →https://doi.org/10.3390/insects6020524openalex-snapshot

Identification of Eastern United States Reticulitermes Termite Species via PCR-RFLP, Assessed Using Training and Test Data

inferredcites →https://doi.org/10.5194/cp-3-109-2007openalex-snapshot

Predicting Pleistocene climate from vegetation in North America

inferredcites →https://doi.org/10.5860/choice.37-5647openalex-snapshot

Phylogeography: the history and formation of species

inferredcites →https://doi.org/10.5860/choice.43-2194openalex-snapshot

The geographic mosaic of coevolution

inferredcites →https://doi.org/10.7208/chicago/9780226118697.001.0001openalex-snapshot

The Geographic Mosaic of Coevolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.1002/ece3.10725openalex-snapshot

Genetic signatures of lineage fusion closely resemble population decline

inferred← citeshttps://doi.org/10.1002/ece3.73591openalex-snapshot

How Large, Decayed, and Moist Must Rotting Logs Be to Act as Thermally Buffered Microhabitats in Temperate Eastern United States Forests?

inferred← citeshttps://doi.org/10.1002/ece3.9778openalex-snapshot

Whole genome demographic models indicate divergent effective population size histories shape contemporary genetic diversity gradients in a montane bumble bee

inferred← citeshttps://doi.org/10.4039/tce.2023.13openalex-snapshot

Genome-wide markers show continental structuring and mitonuclear discordance in the forest tent caterpillar (Malacosoma disstria Hübner) (Lepidoptera: Lasiocampidae)

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