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“Type D” killer whale genomes reveal long-term small population size and low genetic diversity
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
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Hybridization in the Cetacea: widespread occurrence and associated morphological, behavioral, and ecological factors
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Enigmatic megafauna: type D killer whale in the Southern Ocean
inferredcites →https://doi.org/10.1002/evl3.229openalex-snapshot
Mutation load decreases with haplotype age in wild Soay sheep
inferredcites →https://doi.org/10.1007/bf01245622openalex-snapshot
Linkage disequilibrium in finite populations
inferredcites →https://doi.org/10.1007/s00300-010-0871-3openalex-snapshot
Observations of a distinctive morphotype of killer whale (Orcinus orca), type D, from subantarctic waters
inferredcites →https://doi.org/10.1007/s00300-013-1354-0openalex-snapshot
Mitogenomic insights into a recently described and rarely observed killer whale morphotype
inferredcites →https://doi.org/10.1007/s00300-016-1942-xopenalex-snapshot
Morphological and ecological evidence for two sympatric forms of Type B killer whale around the Antarctic Peninsula
inferredcites →https://doi.org/10.1016/0040-5809(75)90020-9openalex-snapshot
On the number of segregating sites in genetical models without recombination
inferredcites →https://doi.org/10.1016/j.ajhg.2013.05.003openalex-snapshot
Long Runs of Homozygosity Are Enriched for Deleterious Variation
inferredcites →https://doi.org/10.1016/j.anbehav.2009.01.018openalex-snapshot
The social dynamics of southern resident killer whales and conservation implications for this endangered population
inferredcites →https://doi.org/10.1016/j.tpb.2021.06.003openalex-snapshot
The distribution of waiting distances in ancestral recombination graphs
inferredcites →https://doi.org/10.1017/cbo9780511623486openalex-snapshot
The Neutral Theory of Molecular Evolution
inferredcites →https://doi.org/10.1017/s0016672300011459openalex-snapshot
Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles
inferredcites →https://doi.org/10.1017/s0025315414000277openalex-snapshot
A comparison of pigmentation features among North Atlantic killer whale (Orcinus orca) populations
inferredcites →https://doi.org/10.1038/35075590openalex-snapshot
Linkage disequilibrium in the human genome
inferredcites →https://doi.org/10.1038/hdy.1986.135openalex-snapshot
The barrier to genetic exchange between hybridising populations
inferredcites →https://doi.org/10.1038/hdy.2016.54openalex-snapshot
Genome-wide SNP data suggest complex ancestry of sympatric North Pacific killer whale ecotypes
inferredcites →https://doi.org/10.1038/nature10231openalex-snapshot
Inference of human population history from individual whole-genome sequences
inferredcites →https://doi.org/10.1038/ncomms11693openalex-snapshot
Genome-culture coevolution promotes rapid divergence of killer whale ecotypes
inferredcites →https://doi.org/10.1038/ng.3198openalex-snapshot
Convergent evolution of the genomes of marine mammals
inferredcites →https://doi.org/10.1038/nrg2361openalex-snapshot
Linkage disequilibrium — understanding the evolutionary past and mapping the medical future
inferredcites →https://doi.org/10.1038/s41467-021-24264-9openalex-snapshot
Orbital- and millennial-scale Antarctic Circumpolar Current variability in Drake Passage over the past 140,000 years
inferredcites →https://doi.org/10.1038/s41559-023-01995-0openalex-snapshot
Inbreeding depression explains killer whale population dynamics
inferredcites →https://doi.org/10.1086/321275openalex-snapshot
Linkage Disequilibrium in Humans: Models and Data
inferredcites →https://doi.org/10.1086/519795openalex-snapshot
PLINK: A Tool Set for Whole-Genome Association and Population-Based Linkage Analyses
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btq559openalex-snapshot
Robust relationship inference in genome-wide association studies
inferredcites →https://doi.org/10.1093/bioinformatics/btt193openalex-snapshot
mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters
inferredcites →https://doi.org/10.1093/genetics/110.2.325openalex-snapshot
GENE GENEALOGY AND VARIANCE OF INTERPOPULATIONAL NUCLEOTIDE DIFFERENCES
inferredcites →https://doi.org/10.1093/genetics/134.4.1289openalex-snapshot
The effect of deleterious mutations on neutral molecular variation.
inferredcites →https://doi.org/10.1093/genetics/153.4.1959openalex-snapshot
A Comparison of Multilocus Clines Maintained by Environmental Adaptation or by Selection Against Hybrids
inferredcites →https://doi.org/10.1093/genetics/155.1.451openalex-snapshot
The Coalescent With Gene Conversion
inferredcites →https://doi.org/10.1093/genetics/61.4.893openalex-snapshot
THE NUMBER OF HETEROZYGOUS NUCLEOTIDE SITES MAINTAINED IN A FINITE POPULATION DUE TO STEADY FLUX OF MUTATIONS
inferredcites →https://doi.org/10.1093/genetics/78.2.737openalex-snapshot
THE EVOLUTIONARY ADVANTAGE OF RECOMBINATION
inferredcites →https://doi.org/10.1093/genetics/88.4.829openalex-snapshot
THE EFFECT OF INTRAGENIC RECOMBINATION ON THE NUMBER OF ALLELES IN A FINITE POPULATION
inferredcites →https://doi.org/10.1093/jhered/esaa020openalex-snapshot
Consequences of Single-Locus and Tightly Linked Genomic Architectures for Evolutionary Responses to Environmental Change
inferredcites →https://doi.org/10.1093/jhered/esr067openalex-snapshot
Inferred Paternity and Male Reproductive Success in a Killer Whale (Orcinus orca) Population
inferredcites →https://doi.org/10.1093/molbev/msab050openalex-snapshot
The Impact of Purifying and Background Selection on the Inference of Population History: Problems and Prospects
inferredcites →https://doi.org/10.1093/molbev/msm063openalex-snapshot
Evolution of Population Structure in a Highly Social Top Predator, the Killer Whale
inferredcites →https://doi.org/10.1093/molbev/msn083openalex-snapshot
jModelTest: Phylogenetic Model Averaging
inferredcites →https://doi.org/10.1093/molbev/msn185openalex-snapshot
Estimation of Nucleotide Diversity, Disequilibrium Coefficients, and Mutation Rates from High-Coverage Genome-Sequencing Projects
inferredcites →https://doi.org/10.1093/molbev/msr048openalex-snapshot
Testing for Ancient Admixture between Closely Related Populations
inferredcites →https://doi.org/10.1093/molbev/msu074openalex-snapshot
Ancient Whole Genome Enrichment Using Baits Built from Modern DNA
inferredcites →https://doi.org/10.1093/molbev/msy108openalex-snapshot
Population Genomic Analysis Reveals Contrasting Demographic Changes of Two Closely Related Dolphin Species in the Last Glacial
inferredcites →https://doi.org/10.1093/nar/29.23.4793openalex-snapshot
DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA
inferredcites →https://doi.org/10.1093/nar/gkr771openalex-snapshot
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
inferredcites →https://doi.org/10.1093/oso/9780198856566.001.0001openalex-snapshot
Conservation and the Genomics of Populations
inferredcites →https://doi.org/10.1093/schbul/syp004openalex-snapshot
Coalescent Theory: An Introduction
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1098/rsbl.2008.0168openalex-snapshot
Mitochondrial sequence divergence among Antarctic killer whale ecotypes is consistent with multiple species
inferredcites →https://doi.org/10.1098/rsbl.2021.0328openalex-snapshot
Increasing numbers of killer whale individuals use fisheries as feeding opportunities within subantarctic populations
inferredcites →https://doi.org/10.1098/rstb.1996.0139openalex-snapshot
The Croonian Lecture, 1996: Endogenous damage to DNA
inferredcites →https://doi.org/10.1101/gr.102954.109openalex-snapshot
Complete mitochondrial genome phylogeographic analysis of killer whales (Orcinus orca) indicates multiple species.
inferredcites →https://doi.org/10.1101/pdb.prot5448openalex-snapshot
Illumina Sequencing Library Preparation for Highly Multiplexed Target Capture and Sequencing
inferredcites →https://doi.org/10.1111/1755-0998.13284openalex-snapshot
Reference genome and demographic history of the most endangered marine mammal, the vaquita
inferredcites →https://doi.org/10.1111/2041-210x.12871openalex-snapshot
Single‐tube library preparation for degraded DNA
inferredcites →https://doi.org/10.1111/acv.12413openalex-snapshot
Inbreeding in an endangered killer whale population
inferredcites →https://doi.org/10.1111/j.1365-294x.2005.02617.xopenalex-snapshot
Recombination and speciation
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04482.xopenalex-snapshot
mlRho – a program for estimating the population mutation and recombination rates from shotgun‐sequenced diploid genomes
inferredcites →https://doi.org/10.1111/j.1365-294x.2011.05080.xopenalex-snapshot
The coupling hypothesis: why genome scans may fail to map local adaptation genes
inferredcites →https://doi.org/10.1111/j.1469-1809.2006.00285.xopenalex-snapshot
Standardized Subsets of the HGDP‐CEPH Human Genome Diversity Cell Line Panel, Accounting for Atypical and Duplicated Samples and Pairs of Close Relatives
inferredcites →https://doi.org/10.1111/j.1558-5646.1967.tb03421.xopenalex-snapshot
WHY DOES THE GENOTYPE NOT CONGEAL?
inferredcites →https://doi.org/10.1111/j.1558-5646.1981.tb04864.xopenalex-snapshot
SKEPTICISM TOWARDS SANTA ROSALIA, OR WHY ARE THERE SO FEW KINDS OF ANIMALS?
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00622.xopenalex-snapshot
THE EVOLUTION OF STRONG REPRODUCTIVE ISOLATION
inferredcites →https://doi.org/10.1111/j.1748-7692.2000.tb00938.xopenalex-snapshot
VARIATION IN EYE‐PATCH SHAPE OF KILLER WHALES (ORCINUS ORCA) IN NEW ZEALAND WATERS
inferredcites →https://doi.org/10.1111/mec.12750openalex-snapshot
Theoretical models of the influence of genomic architecture on the dynamics of speciation
inferredcites →https://doi.org/10.1111/mec.13284openalex-snapshot
Geographic and temporal dynamics of a global radiation and diversification in the killer whale
inferredcites →https://doi.org/10.1111/mec.13390openalex-snapshot
The consequences of not accounting for background selection in demographic inference
inferredcites →https://doi.org/10.1111/mec.14954openalex-snapshot
Allele frequency‐free inference of close familial relationships from genotypes or low‐depth sequencing data
inferredcites →https://doi.org/10.1111/mec.15099openalex-snapshot
Killer whale genomes reveal a complex history of recurrent admixture and vicariance
inferredcites →https://doi.org/10.1111/mec.16137openalex-snapshot
Runs of homozygosity in killer whale genomes provide a global record of demographic histories
inferredcites →https://doi.org/10.1111/mms.12307openalex-snapshot
Depredation of Patagonian toothfish (Dissostichus eleginoides) by two sympatrically occurring killer whale (Orcinus orca) ecotypes: Insights on the behavior of the rarely observed type D killer whales
inferredcites →https://doi.org/10.1126/sciadv.aau0757openalex-snapshot
Genomic signatures of extensive inbreeding in Isle Royale wolves, a population on the threshold of extinction
inferredcites →https://doi.org/10.1126/science.1188021openalex-snapshot
A Draft Sequence of the Neandertal Genome
inferredcites →https://doi.org/10.1126/science.aaa3952openalex-snapshot
Mountain gorilla genomes reveal the impact of long-term population decline and inbreeding
inferredcites →https://doi.org/10.1146/annurev-ecolsys-110617-062431openalex-snapshot
Using Genomic Data to Infer Historic Population Dynamics of Nonmodel Organisms
inferredcites →https://doi.org/10.1186/1471-2105-7-474openalex-snapshot
Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor
inferredcites →https://doi.org/10.1186/s12859-014-0356-4openalex-snapshot
ANGSD: Analysis of Next Generation Sequencing Data
inferredcites →https://doi.org/10.1186/s12864-018-4489-0openalex-snapshot
Assessing runs of Homozygosity: a comparison of SNP Array and whole genome sequence low coverage data
inferredcites →https://doi.org/10.1186/s13104-016-1900-2openalex-snapshot
AdapterRemoval v2: rapid adapter trimming, identification, and read merging
inferredcites →https://doi.org/10.12688/wellcomeopenres.18278.1openalex-snapshot
The genome sequence of the killer whale, Orcinus orca (Linnaeus, 1758)
inferredcites →https://doi.org/10.1371/journal.pgen.1004379openalex-snapshot
The Impact of Population Demography and Selection on the Genetic Architecture of Complex Traits
inferredcites →https://doi.org/10.1534/g3.117.300259openalex-snapshot
Comparison of Single Genome and Allele Frequency Data Reveals Discordant Demographic Histories
inferredcites →https://doi.org/10.1534/genetics.108.098830openalex-snapshot
Linkage Disequilibrium and Demographic History of Wild and Domestic Canids
inferredcites →https://doi.org/10.1534/genetics.114.166843openalex-snapshot
Genome-Wide Linkage-Disequilibrium Profiles from Single Individuals
inferredcites →https://doi.org/10.1534/genetics.116.198861openalex-snapshot
Inferring Individual Inbreeding and Demographic History from Segments of Identity by Descent in Ficedula Flycatcher Genome Sequences
inferredcites →https://doi.org/10.1644/06-mamm-a-118r1.1openalex-snapshot
A Dwarf Form of Killer Whale in Antarctica
inferredcites →https://doi.org/10.47536/jcrm.v5i2.813openalex-snapshot
Three forms of killer whales (Orcinus orca) in Antarctic waters
inferredcites →https://doi.org/10.48550/arxiv.1303.3997openalex-snapshot
Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM
inferredcites →https://doi.org/10.7554/elife.36317openalex-snapshot
Background selection and biased gene conversion affect more than 95% of the human genome and bias demographic inferences
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1098/rsos.231368zenodo-depositor-declared
Revised taxonomy of eastern North Pacific killer whales ( Orcinus orca ): Bigg’s and resident ecotypes deserve species status
inferred← citeshttps://doi.org/10.1002/ece3.73887openalex-snapshot
An Assessment of Allelic and SNP Bias in a Genome‐Wide SNP Enrichment Kit for Killer Whales
inferred← citeshttps://doi.org/10.1007/978-3-031-23847-5_43-1openalex-snapshot
Killer Whale Orcinus orca (Linnaeus, 1758)
inferred← citeshttps://doi.org/10.1007/s00300-023-03156-2openalex-snapshot
Unraveling the enigmatic type D killer whale (Orcinus orca): mass stranding in the Magellan Strait, Chile
inferred← citeshttps://doi.org/10.1007/s00300-025-03443-0openalex-snapshot
Orcas (Orcinus orca Linnaeus, 1758) in southern Chilean Los Ríos Region: a first report—with a discussion of the state of knowledge on the species along the Chilean coast
inferred← citeshttps://doi.org/10.1093/gbe/evae130openalex-snapshot
Genomic Consequences of Isolation and Inbreeding in an Island Dingo Population
inferred← citeshttps://doi.org/10.1111/1755-0998.14109openalex-snapshot
Leveraging Synteny to Generate Reference Genomes for Conservation: Assembling the Genomes of Hector's and Māui Dolphins
inferred← citeshttps://doi.org/10.1111/mam.70046openalex-snapshot
Killer Whales ( Orcinus orca ) in the Indo‐Pacific: A Review of Their Distribution, Population Structure, and Ecology
inferred← citeshttps://doi.org/10.1111/mec.17205openalex-snapshot
Population genomics of the muskox' resilience in the near absence of genetic variation
inferred← citeshttps://doi.org/10.1111/mec.17689openalex-snapshot
Admixture Increases Genetic Diversity and Adaptive Potential in Australasian Killer Whales
inferred← citeshttps://doi.org/10.1111/mec.70567openalex-snapshot
Advancing Marine Mammal Conservation Through Omics Tools and Integration of Indigenous Ecological Knowledge
inferred← citeshttps://doi.org/10.1111/mms.70059openalex-snapshot
Genetic Diversity and Effective Population Size of the Endangered Crozet Killer Whales
inferred← citeshttps://doi.org/10.1111/mms.70192openalex-snapshot
Total Numbers and Movements of Photo‐Identified Subantarctic (Type D) Killer Whales
inferred← citeshttps://doi.org/10.1111/mms.70278openalex-snapshot
Clarifying the Genomic Findings for Subantarctic Type D Killer Whales
inferred← citeshttps://doi.org/10.2989/1814232x.2026.2635132openalex-snapshot
Whale killers on the coast of South Africa: killer whale predation on a humpback whale super-group
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