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Heterogeneous Histories of Recombination Suppression on Stickleback Sex Chromosomes

https://doi.org/10.1093/molbev/msab179
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Outgoing claims: the papers this work cites, builds on, or argues with.

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Evolution of X-Degenerate Y Chromosome Genes in Greater Apes: Conservation of Gene Content in Human and Gorilla, But Not Chimpanzee
inferredcites →https://doi.org/10.1007/s00412-016-0576-7openalex-snapshot
Discovery of the youngest sex chromosomes reveals first case of convergent co-option of ancestral autosomes in turtles
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Sex Chromosome Specialization and Degeneration in Mammals
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The Master Sex-Determination Locus in Threespine Sticklebacks Is on a Nascent Y Chromosome
inferredcites →https://doi.org/10.1016/j.cub.2009.05.029openalex-snapshot
The Genetic Architecture of Skeletal Convergence and Sex Determination in Ninespine Sticklebacks
inferredcites →https://doi.org/10.1017/s0016672300014051openalex-snapshot
Sex differences in fitness and selection for centric fusions between sex-chromosomes and autosomes
inferredcites →https://doi.org/10.1038/nature04101openalex-snapshot
Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee
inferredcites →https://doi.org/10.1038/nature06178openalex-snapshot
Turnover of sex chromosomes induced by sexual conflict
inferredcites →https://doi.org/10.1038/nature08441openalex-snapshot
A role for a neo-sex chromosome in stickleback speciation
inferredcites →https://doi.org/10.1038/nature08700openalex-snapshot
Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content
inferredcites →https://doi.org/10.1038/nature12235openalex-snapshot
Reversal of an ancient sex chromosome to an autosome in Drosophila
inferredcites →https://doi.org/10.1038/nature13151openalex-snapshot
Origins and functional evolution of Y chromosomes across mammals
inferredcites →https://doi.org/10.1038/ng.806openalex-snapshot
A framework for variation discovery and genotyping using next-generation DNA sequencing data
inferredcites →https://doi.org/10.1038/s41467-018-06517-2openalex-snapshot
A rapid rate of sex-chromosome turnover and non-random transitions in true frogs
inferredcites →https://doi.org/10.1038/s41467-018-08014-yopenalex-snapshot
The evolution of sex determination associated with a chromosomal inversion
inferredcites →https://doi.org/10.1038/s41477-021-00884-3openalex-snapshot
Plant sex chromosomes defy evolutionary models of expanding recombination suppression and genetic degeneration
inferredcites →https://doi.org/10.1038/s41559-019-0850-1openalex-snapshot
Dynamic evolutionary history and gene content of sex chromosomes across diverse songbirds
inferredcites →https://doi.org/10.1073/pnas.1319227111openalex-snapshot
Genetic degeneration of old and young Y chromosomes in the flowering plant Rumex hastatulus
inferredcites →https://doi.org/10.1073/pnas.1508454112openalex-snapshot
Rapid Y degeneration and dosage compensation in plant sex chromosomes
inferredcites →https://doi.org/10.1073/pnas.1905298116openalex-snapshot
Extreme heterogeneity in sex chromosome differentiation and dosage compensation in livebearers
inferredcites →https://doi.org/10.1093/acprof:oso/9780199657148.001.0001openalex-snapshot
The Evolution of Sex Determination
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btp352openalex-snapshot
The Sequence Alignment/Map format and SAMtools
inferredcites →https://doi.org/10.1093/bioinformatics/btp698openalex-snapshot
Fast and accurate long-read alignment with Burrows–Wheeler transform
inferredcites →https://doi.org/10.1093/bioinformatics/btq033openalex-snapshot
BEDTools: a flexible suite of utilities for comparing genomic features
inferredcites →https://doi.org/10.1093/bioinformatics/btr330openalex-snapshot
The variant call format and VCFtools
inferredcites →https://doi.org/10.1093/bioinformatics/bts184openalex-snapshot
ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/g3journal/jkab007openalex-snapshot
Improved contiguity of the threespine stickleback genome using long-read sequencing
inferredcites →https://doi.org/10.1093/g3journal/jkab435openalex-snapshot
Evolution of the canonical sex chromosomes of the guppy and its relatives
inferredcites →https://doi.org/10.1093/gbe/evaa099openalex-snapshot
Guppy Y Chromosome Integrity Maintained by Incomplete Recombination Suppression
inferredcites →https://doi.org/10.1093/gbe/evv013openalex-snapshot
Spatial Dynamics of Evolving Dosage Compensation in a Young Sex Chromosome System
inferredcites →https://doi.org/10.1093/gbe/evz154openalex-snapshot
Evolutionary Dynamics of Sex Chromosomes of Paleognathous Birds
inferredcites →https://doi.org/10.1093/gbe/evz240openalex-snapshot
A high-quality assembly of the nine-spined stickleback (Pungitius pungitius) genome
inferredcites →https://doi.org/10.1093/jhered/esw054openalex-snapshot
Accumulation of Deleterious Mutations on the Neo-Y Chromosome of Japan Sea Stickleback (Gasterosteus nipponicus)
inferredcites →https://doi.org/10.1093/molbev/msm088openalex-snapshot
PAML 4: Phylogenetic Analysis by Maximum Likelihood
inferredcites →https://doi.org/10.1093/molbev/msq031openalex-snapshot
Female-Biased Expression on the X Chromosome as a Key Step in Sex Chromosome Evolution in Threespine Sticklebacks
inferredcites →https://doi.org/10.1093/molbev/mst035openalex-snapshot
Progressive Recombination Suppression and Differentiation in Recently Evolved Neo-sex Chromosomes
inferredcites →https://doi.org/10.1093/molbev/msv078openalex-snapshot
Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome
inferredcites →https://doi.org/10.1093/molbev/msx064openalex-snapshot
Purifying and Positive Selection Influence Patterns of Gene Loss and Gene Expression in the Evolution of a Plant Sex Chromosome System
inferredcites →https://doi.org/10.1093/molbev/msy181openalex-snapshot
The Origin of a New Sex Chromosome by Introgression between Two Stickleback Fishes
inferredcites →https://doi.org/10.1093/oso/9780198862291.003.0007openalex-snapshot
Molecular Population Genetics
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026283openalex-snapshot
Rooting a Phylogeny with Homologous Genes on Opposite Sex Chromosomes (Gametologs): A Case Study Using Avian CHD
inferredcites →https://doi.org/10.1098/rspb.1987.0066openalex-snapshot
On the evolution of sex determination
inferredcites →https://doi.org/10.1098/rstb.2013.0342openalex-snapshot
Evaluation of genetic isolation within an island flora reveals unusually widespread local adaptation and supports sympatric speciation
inferredcites →https://doi.org/10.1101/2020.09.25.314112openalex-snapshot
Evolution of the canonical sex chromosomes of the guppy and its relatives
inferredcites →https://doi.org/10.1101/gr.215509.116openalex-snapshot
The house fly Y Chromosome is young and minimally differentiated from its ancient X Chromosome partner.
inferredcites →https://doi.org/10.1111/evo.12792openalex-snapshot
The evolutionary dynamics of haplodiploidy: Genome architecture and haploid viability
inferredcites →https://doi.org/10.1111/evo.13860openalex-snapshot
Phylogeography, more than elevation, accounts for sex chromosome differentiation in Swiss populations of the common frog ( Rana temporaria )*
inferredcites →https://doi.org/10.1111/j.1095-8649.2009.02419.xopenalex-snapshot
Along the speciation continuum in sticklebacks
inferredcites →https://doi.org/10.1111/j.1558-5646.1987.tb05864.xopenalex-snapshot
THE ACCUMULATION OF SEXUALLY ANTAGONISTIC GENES AS A SELECTIVE AGENT PROMOTING THE EVOLUTION OF REDUCED RECOMBINATION BETWEEN PRIMITIVE SEX CHROMOSOMES
inferredcites →https://doi.org/10.1111/j.1558-5646.2012.01810.xopenalex-snapshot
SEX-CHROMOSOME TURNOVERS INDUCED BY DELETERIOUS MUTATION LOAD
inferredcites →https://doi.org/10.1111/j.2041-210x.2011.00169.xopenalex-snapshot
phytools: an R package for phylogenetic comparative biology (and other things)
inferredcites →https://doi.org/10.1111/mec.12322openalex-snapshot
Recombination in the threespine stickleback genome—patterns and consequences
inferredcites →https://doi.org/10.1111/mec.14990openalex-snapshot
A reciprocal translocation radically reshapes sex‐linked inheritance in the common frog
inferredcites →https://doi.org/10.1111/mec.15126openalex-snapshot
The rise and fall of differentiated sex chromosomes in geckos
inferredcites →https://doi.org/10.1111/mec.15245openalex-snapshot
How to identify sex chromosomes and their turnover
inferredcites →https://doi.org/10.1111/mec.15255openalex-snapshot
Widespread intersex differentiation across the stickleback genome – The signature of sexually antagonistic selection?
inferredcites →https://doi.org/10.1126/science.1246338openalex-snapshot
Complex evolutionary trajectories of sex chromosomes across bird taxa
inferredcites →https://doi.org/10.1159/000130102openalex-snapshot
A comparative chromosome study of the North American species of sticklebacks (Teleostei: Gasterosteidae)
inferredcites →https://doi.org/10.1186/s13059-020-02097-xopenalex-snapshot
Assembly of the threespine stickleback Y chromosome reveals convergent signatures of sex chromosome evolution
inferredcites →https://doi.org/10.1371/journal.pbio.1001899openalex-snapshot
Sex Determination: Why So Many Ways of Doing It?
inferredcites →https://doi.org/10.1371/journal.pbio.1002078openalex-snapshot
Numerous Transitions of Sex Chromosomes in Diptera
inferredcites →https://doi.org/10.1371/journal.pgen.1000391openalex-snapshot
Turnover of Sex Chromosomes in the Stickleback Fishes (Gasterosteidae)
inferredcites →https://doi.org/10.1371/journal.pgen.1000625openalex-snapshot
A High Incidence of Meiotic Silencing of Unsynapsed Chromatin Is Not Associated with Substantial Pachytene Loss in Heterozygous Male Mice Carrying Multiple Simple Robertsonian Translocations
inferredcites →https://doi.org/10.1371/journal.pgen.1000862openalex-snapshot
Population Genomics of Parallel Adaptation in Threespine Stickleback using Sequenced RAD Tags
inferredcites →https://doi.org/10.1371/journal.pgen.1002798openalex-snapshot
A Trans-Species Missense SNP in Amhr2 Is Associated with Sex Determination in the Tiger Pufferfish, Takifugu rubripes (Fugu)
inferredcites →https://doi.org/10.1371/journal.pgen.1004223openalex-snapshot
Sex Chromosome Turnover Contributes to Genomic Divergence between Incipient Stickleback Species
inferredcites →https://doi.org/10.1371/journal.pgen.1007358openalex-snapshot
The genomic landscape at a late stage of stickleback speciation: High genomic divergence interspersed by small localized regions of introgression
inferredcites →https://doi.org/10.1371/journal.pone.0190635openalex-snapshot
Identification of the sex-determining locus in grass puffer (Takifugu niphobles) provides evidence for sex-chromosome turnover in a subset of Takifugu species
inferredcites →https://doi.org/10.1534/g3.115.017905openalex-snapshot
Genome Assembly Improvement and Mapping Convergently Evolved Skeletal Traits in Sticklebacks with Genotyping-by-Sequencing
inferredcites →https://doi.org/10.1534/g3.115.018671openalex-snapshot
Evidence for a Common Origin of Homomorphic and Heteromorphic Sex Chromosomes in Distinct Spinacia Species
inferredcites →https://doi.org/10.1534/g3.118.200166openalex-snapshot
Sex Differences in Recombination in Sticklebacks
inferredcites →https://doi.org/10.1534/genetics.108.088559openalex-snapshot
Molecular Cytogenetic Evidence of Rearrangements on the Y Chromosome of the Threespine Stickleback Fish
inferredcites →https://doi.org/10.1534/genetics.167.1.367openalex-snapshot
Evolutionary Strata on the Chicken Z Chromosome: Implications for Sex Chromosome Evolution
inferredcites →https://doi.org/10.18637/jss.v058.i03openalex-snapshot
changepoint : An R Package for Changepoint Analysis
inferredcites →https://doi.org/10.2307/1443632openalex-snapshot
The Biology of the Sticklebacks

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Evolution of a ZW sex chromosome system in willows
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Turnover of sex chromosomes in the Lake Tanganyika cichlid tribe Tropheini (Teleostei: Cichlidae)
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Evolutionary dynamics of enlarged neo-sex chromosomes and novel pseudoautosomal regions in Sylvioidea songbirds
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Emergence of genetic sex determination in an environmentally sex-determined animal
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Slower-X: reduced efficiency of selection in the early stages of X chromosome evolution
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Sex chromosome turnover in hybridizing stickleback lineages
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RETRACTED AND REPLACED: The evolution of suppressed recombination between sex chromosomes and the lengths of evolutionary strata
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The evolution of suppressed recombination between sex chromosomes and the lengths of evolutionary strata
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Evolution of the canonical sex chromosomes of the guppy and its relatives
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Heterogeneous genomic architecture of skeletal armour traits in sticklebacks
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Sex unfolded: sex, asex, sexes
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Chromosome-Level Genome Assembly Reveals Dynamic Sex Chromosomes in Neotropical Leaf-Litter Geckos (Sphaerodactylidae: Sphaerodactylus )
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Chromosomal fusions and evolutionary forces: Exploring the neo-sex chromosome system of Anolis distichus
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Independent Evolution of Sex Chromosomes and Male Pregnancy–Related Genes in Two Seahorse Species
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Positive Selection Drives cis-regulatory Evolution Across the Threespine Stickleback Y Chromosome
inferred← citeshttps://doi.org/10.1093/molbev/msae218openalex-snapshot
Sex Chromosome Evolution: Hallmarks and Question Marks
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Extensive Recombination Suppression and Genetic Degeneration of a Young ZW Sex Chromosome System in Halfbeak Fish
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A neutral model for the loss of recombination on sex chromosomes
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Sex chromosomes as supergenes of speciation: why amphibians defy the rules?
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Searching for signatures of sexually antagonistic selection on stickleback sex chromosomes
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Evolution of the canonical sex chromosomes of the guppy and its relatives
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Convergent recruitment of Amh as the sex determination gene in two lineages of stickleback fish
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Rapid turnover and evolution of sex-determining regions among Sebastes rockfishes
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Sex chromosome turnover in African annual killifishes of the genus Nothobranchius
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Strong but diffuse genetic divergence underlies differentiation in an incipient species of marine stickleback
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Identification of a candidate sex determination gene in Culaea inconstans suggests convergent recruitment of an Amh duplicate in two lineages of stickleback
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Chromosomal rearrangements and the first indication of an ♀ X1X1X2X2 /♂ X1X2Y sex chromosome system in Rineloricaria fishes (Teleostei: Siluriformes)
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Genomic basis of Y‐linked dwarfism in cichlids pursuing alternative reproductive tactics
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Rapid turnover and evolution of sex‐determining regions in Sebastes rockfishes
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Multiple Origins of Sex Chromosomes in Nothobranchius Killifishes
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Evolution of a ZW sex determination system in sticklebacks
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Increased Rate of Fixation of Nucleotide Substitutions in the Mitochondrial DNA of Bony Fish Species (Osteichthyes) That Originated from the Arctic or Settled through It
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Mechanisms of Diversification during Changes in Habitat in the Three-Spine Stickleback (Gasterosteus aculeatus) Are Fundamentally Different from the Mechanisms of Speciation within the Genus Gasterosteus
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The first chromosome-level annotated reference genome for Chrosomus eos , the Northern Redbelly Dace
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Diversity and Convergence of Sex-Determination Mechanisms in Teleost Fish
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The fourspine stickleback (Apeltes quadracus) has an XY sex chromosome system with polymorphic inversions on both X and Y chromosomes
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A Y-linked duplication of anti-Mullerian hormone is the sex determination gene in threespine stickleback
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An unusual origin of a ZW sex chromosome system
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Development of an Accurate Polymerase Chain Reaction (PCR) Assay for Genetic Sex Identification in Lumpfish (Cyclopterus lumpus) Based on Male-Specific Anti-Mullerian Hormone (amh) Gene
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Heterogeneous Evolution of Sex Chromosomes in the Torrent Frog Genus Amolops
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The Cause–Effect Model of Master Sex Determination Gene Acquisition and the Evolution of Sex Chromosomes
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The Role of Amh in Gonadal Development and Its Response to Exogenous Hormones in Blotched Snakehead (Channa maculata)
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Coexisting Y haplotypes reveal cyclic sex chromosome differentiation around a shared sex-determining region
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