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Antibiotic Cycling Affects Resistance Evolution Independently of Collateral Sensitivity

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Evolution of bacteria specialization along an antibiotic dose gradient

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DNA Packaging by Bacteriophage P22

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Drug-Driven Phenotypic Convergence Supports Rational Treatment Strategies of Chronic Infections

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Association between augmented renal clearance, antibiotic exposure and clinical outcome in critically ill septic patients receiving high doses of β-lactams administered by continuous infusion: a prospective observational study

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Evolution of Salmonella within Hosts

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Basic Local Alignment Search Tool

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Global burden of bacterial antimicrobial resistance in 2019: a systematic analysis

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Antibiotics as Signal Molecules

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Solution structure of the homodimeric core domain of Escherichia coli histidine kinase EnvZ.

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NMR structure of the histidine kinase domain of the E. coli osmosensor EnvZ

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Density-dependent adaptive resistance allows swimming bacteria to colonize an antibiotic gradient

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Using experimental evolution to identify druggable targets that could inhibit the evolution of antimicrobial resistance

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Bacterial evolution of antibiotic hypersensitivity

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Evolutionary rescue from extinction is contingent on a lower rate of environmental change

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Tempo and mode of genome evolution in a 50,000-generation experiment

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Time-programmable drug dosing allows the manipulation, suppression and reversal of antibiotic drug resistance in vitro

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The crystal structure of multidrug-resistance regulator RamR with multiple drugs

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Genome-wide analysis captures the determinants of the antibiotic cross-resistance interaction network

inferredcites →https://doi.org/10.1038/ng.1034openalex-snapshot

Evolutionary paths to antibiotic resistance under dynamically sustained drug selection

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Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes

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Agar and broth dilution methods to determine the minimal inhibitory concentration (MIC) of antimicrobial substances

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Genome dynamics during experimental evolution

inferredcites →https://doi.org/10.1038/nrmicro2319openalex-snapshot

Antibiotic resistance and its cost: is it possible to reverse resistance?

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Microbiological effects of sublethal levels of antibiotics

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Antimicrobial pharmacodynamics: critical interactions of 'bug and drug'

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Antibiotic collateral sensitivity is contingent on the repeatability of evolution

inferredcites →https://doi.org/10.1038/s41467-019-12364-6openalex-snapshot

Integrated evolutionary analysis reveals antimicrobial peptides with limited resistance

inferredcites →https://doi.org/10.1038/s41467-020-15080-8openalex-snapshot

Dominant resistance and negative epistasis can limit the co-selection of de novo resistance mutations and antibiotic resistance genes

inferredcites →https://doi.org/10.1038/s41522-020-00178-0openalex-snapshot

Exposure of Salmonella biofilms to antibiotic concentrations rapidly selects resistance with collateral tradeoffs

inferredcites →https://doi.org/10.1038/s41598-018-33568-8openalex-snapshot

Fine-tuning carbapenem resistance by reducing porin permeability of bacteria activated in the selection process of conjugation

inferredcites →https://doi.org/10.1038/srep37853openalex-snapshot

Optimising Antibiotic Usage to Treat Bacterial Infections

inferredcites →https://doi.org/10.1038/srep43306openalex-snapshot

Interplay between Penicillin-binding proteins and SEDS proteins promotes bacterial cell wall synthesis

inferredcites →https://doi.org/10.1042/bj20041125openalex-snapshot

Structural characterization of Escherichia coli sensor histidine kinase EnvZ: the periplasmic C-terminal core domain is critical for homodimerization

inferredcites →https://doi.org/10.1056/nejm200202213460820openalex-snapshot

Emergence of Macrolide Resistance during Treatment of Pneumococcal Pneumonia

inferredcites →https://doi.org/10.1073/pnas.1117716109openalex-snapshot

On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient

inferredcites →https://doi.org/10.1073/pnas.120163297openalex-snapshot

One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products

inferredcites →https://doi.org/10.1073/pnas.1218348109openalex-snapshot

Multidrug binding properties of the AcrB efflux pump characterized by molecular dynamics simulations

inferredcites →https://doi.org/10.1073/pnas.1409800111openalex-snapshot

Alternating antibiotic treatments constrain evolutionary paths to multidrug resistance

inferredcites →https://doi.org/10.1073/pnas.1419939112openalex-snapshot

AcrB drug-binding pocket substitution confers clinically relevant resistance and altered substrate specificity

inferredcites →https://doi.org/10.1073/pnas.1424184112openalex-snapshot

Imperfect drug penetration leads to spatial monotherapy and rapid evolution of multidrug resistance

inferredcites →https://doi.org/10.1073/pnas.1902217116openalex-snapshot

Predicting microbial growth in a mixed culture from growth curve data

inferredcites →https://doi.org/10.1073/pnas.2121768119openalex-snapshot

Allele-specific collateral and fitness effects determine the dynamics of fluoroquinolone resistance evolution

inferredcites →https://doi.org/10.1073/pnas.83.14.5189openalex-snapshot

Mutants of Salmonella typhimurium that cannot survive within the macrophage are avirulent.

inferredcites →https://doi.org/10.1074/jbc.m701342200openalex-snapshot

Structural and Functional Studies of the HAMP Domain of EnvZ, an Osmosensing Transmembrane Histidine Kinase in Escherichia coli

inferredcites →https://doi.org/10.1093/jac/dkf130openalex-snapshot

Pharmacodynamics of cefepime in patients with Gram-negative infections

inferredcites →https://doi.org/10.1093/jac/dkr337openalex-snapshot

Breakthrough bacteraemia due to tigecycline-resistant Escherichia coli with New Delhi metallo- -lactamase (NDM)-1 successfully treated with colistin in a patient with calciphylaxis

inferredcites →https://doi.org/10.1093/jac/dks368openalex-snapshot

Influence of acquired -lactamases on the evolution of spontaneous carbapenem resistance in Escherichia coli

inferredcites →https://doi.org/10.1093/jac/dkv475openalex-snapshot

Combinations of mutations in envZ , ftsI , mrdA , acrB and acrR can cause high-level carbapenem resistance in Escherichia coli

inferredcites →https://doi.org/10.1093/molbev/msu191openalex-snapshot

Strength of Selection Pressure Is an Important Parameter Contributing to the Complexity of Antibiotic Resistance Evolution

inferredcites →https://doi.org/10.1093/molbev/msx158openalex-snapshot

Alternative Evolutionary Paths to Bacterial Antibiotic Resistance Cause Distinct Collateral Effects

inferredcites →https://doi.org/10.1093/nar/gkx1095openalex-snapshot

Database resources of the National Center for Biotechnology Information

inferredcites →https://doi.org/10.1099/jmm.0.024083-0openalex-snapshot

Bacterial hypermutation: clinical implications

inferredcites →https://doi.org/10.1111/1462-2920.12155openalex-snapshot

The extracellular matrix protects P seudomonas aeruginosa biofilms by limiting the penetration of tobramycin

inferredcites →https://doi.org/10.1111/j.1420-9101.2009.01712.xopenalex-snapshot

The cost of multiple drug resistance in Pseudomonas aeruginosa

inferredcites →https://doi.org/10.1126/science.1208747openalex-snapshot

Acceleration of Emergence of Bacterial Antibiotic Resistance in Connected Microenvironments

inferredcites →https://doi.org/10.1126/science.aag0822openalex-snapshot

Spatiotemporal microbial evolution on antibiotic landscapes

inferredcites →https://doi.org/10.1126/scitranslmed.3006609openalex-snapshot

Use of Collateral Sensitivity Networks to Design Drug Cycling Protocols That Avoid Resistance Development

inferredcites →https://doi.org/10.1128/aac.00084-08openalex-snapshot

ramR Mutations Involved in Efflux-Mediated Multidrug Resistance in Salmonella enterica Serovar Typhimurium

inferredcites →https://doi.org/10.1128/aac.01460-09openalex-snapshot

Compensation of Fitness Costs and Reversibility of Antibiotic Resistance Mutations

inferredcites →https://doi.org/10.1128/aac.01495-17openalex-snapshot

Evolution of Antibiotic Resistance without Antibiotic Exposure

inferredcites →https://doi.org/10.1128/aac.05444-11openalex-snapshot

Binding of the RamR Repressor to Wild-Type and Mutated Promoters of the ramA Gene Involved in Efflux-Mediated Multidrug Resistance in Salmonella enterica Serovar Typhimurium

inferredcites →https://doi.org/10.1128/aac.44.7.1771-1777.2000openalex-snapshot

Mutation Frequencies and Antibiotic Resistance

inferredcites →https://doi.org/10.1128/aac.48.10.3729-3735.2004openalex-snapshot

AcrAB-TolC Directs Efflux-Mediated Multidrug Resistance in Salmonella enterica Serovar Typhimurium DT104

inferredcites →https://doi.org/10.1128/jb.180.11.2862-2865.1998openalex-snapshot

Adaptive Mutagenesis at ebgR Is Regulated by PhoPQ

inferredcites →https://doi.org/10.1128/mbio.00770-18openalex-snapshot

Predictable Phenotypes of Antibiotic Resistance Mutations

inferredcites →https://doi.org/10.1186/2110-5820-2-35openalex-snapshot

Does Beta-lactam Pharmacokinetic Variability in Critically Ill Patients Justify Therapeutic Drug Monitoring? A Systematic Review

inferredcites →https://doi.org/10.1186/s12864-019-5648-7openalex-snapshot

Effects of a previously selected antibiotic resistance on mutations acquired during development of a second resistance in Escherichia coli

inferredcites →https://doi.org/10.1371/journal.pbio.2001586openalex-snapshot

History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatment

inferredcites →https://doi.org/10.1371/journal.pone.0098042openalex-snapshot

Crystal Structure of Penicillin-Binding Protein 3 (PBP3) from Escherichia coli

inferredcites →https://doi.org/10.1371/journal.ppat.1008700openalex-snapshot

Cross-feeding modulates the rate and mechanism of antibiotic resistance evolution in a model microbial community of Escherichia coli and Salmonella enterica

inferredcites →https://doi.org/10.1534/genetics.109.103028openalex-snapshot

Contribution of Gene Amplification to Evolution of Increased Antibiotic Resistance inSalmonella typhimurium

inferredcites →https://doi.org/10.2903/j.efsa.2019.5598openalex-snapshot

The European Union summary report on antimicrobial resistance in zoonotic and indicator bacteria from humans, animals and food in 2017

inferredcites →https://doi.org/10.2903/j.efsa.2021.6490openalex-snapshot

The European Union Summary Report on Antimicrobial Resistance in zoonotic and indicator bacteria from humans, animals and food in 2018/2019

inferredcites →https://doi.org/10.3389/fmicb.2013.00213openalex-snapshot

ramR mutations affecting fluoroquinolone susceptibility in epidemic multidrug-resistant Salmonella enterica serovar Kentucky ST198

inferredcites →https://doi.org/10.3389/fmicb.2015.00327openalex-snapshot

Structural basis of RND-type multidrug exporters

inferredcites →https://doi.org/10.3389/fmicb.2017.00816openalex-snapshot

Adaptive Laboratory Evolution of Antibiotic Resistance Using Different Selection Regimes Lead to Similar Phenotypes and Genotypes

inferredcites →https://doi.org/10.3389/fmicb.2018.00756openalex-snapshot

Genetic Adaptation to Growth Under Laboratory Conditions in Escherichia coli and Salmonella enterica

inferredcites →https://doi.org/10.3389/fmicb.2019.00985openalex-snapshot

Antibiotic Resistance in Salmonella Typhimurium Isolates Recovered From the Food Chain Through National Antimicrobial Resistance Monitoring System Between 1996 and 2016

inferredcites →https://doi.org/10.3389/fmicb.2020.00770openalex-snapshot

Genes and Proteomes Associated With Increased Mutation Frequency and Multidrug Resistance of Naturally Occurring Mismatch Repair-Deficient Salmonella Hypermutators

inferredcites →https://doi.org/10.7554/elife.47088openalex-snapshot

Rapid decline of bacterial drug-resistance in an antibiotic-free environment through phenotypic reversion

inferredcites →https://doi.org/10.7554/elife.47612openalex-snapshot

Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle

inferredcites →https://doi.org/10.7554/elife.51481openalex-snapshot

Evolutionary stability of collateral sensitivity to antibiotics in the model pathogen Pseudomonas aeruginosa

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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inferred← citeshttps://doi.org/10.1016/j.jafr.2026.103114openalex-snapshot

Antimicrobial resistance as a potential gateway to cross-protection against food-related stressors in Salmonella enterica

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Unraveling the determinants of antibiotic resistance evolution in farmland under fertilizations

inferred← citeshttps://doi.org/10.1016/j.jmb.2026.169893openalex-snapshot

Mechanistic Origins and Evolutionary Erosion of Collateral Sensitivity in a β-lactamase

inferred← citeshttps://doi.org/10.1016/j.mib.2023.102350openalex-snapshot

Nothing makes sense in drug resistance except in the light of evolution

inferred← citeshttps://doi.org/10.1016/j.microb.2024.100086openalex-snapshot

The mechanisms and clinical potential of collateral sensitivity in Mycobacterium tuberculosis: A literature review

inferred← citeshttps://doi.org/10.1021/acsinfecdis.3c00156openalex-snapshot

Fitness Costs of Antibiotic Resistance Impede the Evolution of Resistance to Other Antibiotics

inferred← citeshttps://doi.org/10.1038/s41522-025-00693-yopenalex-snapshot

EPS inhibitor treatment of Salmonella impacts evolution without selecting for resistance to biofilm inhibition

inferred← citeshttps://doi.org/10.1038/s41559-025-02831-3openalex-snapshot

Evolutionary drivers of divergent collateral sensitivity responses during antibiotic therapy

inferred← citeshttps://doi.org/10.1038/s41564-024-01811-wopenalex-snapshot

Collateral sensitivity counteracts the evolution of antifungal drug resistance in Candida auris

inferred← citeshttps://doi.org/10.1038/s41746-026-02558-wopenalex-snapshot

Evolutionary digital twin framework for optimal aminoglycoside dosing in neonates with suspected sepsis

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Unlocking the potential of experimental evolution to study drug resistance in pathogenic fungi

inferred← citeshttps://doi.org/10.1093/jac/dkae287openalex-snapshot

Insights into macrolide resistance in Arcobacter butzleri: potential resistance mechanisms and impact on bacterial fitness and virulence

inferred← citeshttps://doi.org/10.1093/molbev/msaf115openalex-snapshot

Tripartite Loops Reverse Antibiotic Resistance

inferred← citeshttps://doi.org/10.1101/2024.11.06.622341openalex-snapshot

Backward collateral sensitivity can restore antibiotic susceptibility

inferred← citeshttps://doi.org/10.1128/aem.01155-23openalex-snapshot

Competitive interactions facilitate resistance development against antimicrobials

inferred← citeshttps://doi.org/10.1128/spectrum.03310-24openalex-snapshot

Study on collateral sensitivity of tigecycline to colistin-resistant Enterobacter cloacae complex

inferred← citeshttps://doi.org/10.3389/fmicb.2024.1478789openalex-snapshot

Navigating collateral sensitivity: insights into the mechanisms and applications of antibiotic resistance trade-offs

inferred← citeshttps://doi.org/10.3389/fmicb.2025.1670179openalex-snapshot

In vitro antimicrobial activity and resistance mechanisms of cefiderocol against clinical carbapenem-resistant gram-negative bacteria

inferred← citeshttps://doi.org/10.3390/antibiotics12081335openalex-snapshot

Ciprofloxacin and Tetracycline Resistance Cause Collateral Sensitivity to Aminoglycosides in Salmonella Typhimurium

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