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Evolution of the Deep-Sea Gulper Eel Mitochondrial Genomes: Large-Scale Gene Rearrangements Originated Within the Eels

https://doi.org/10.1093/molbev/msg206
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Mitochondrial Gene Order Adjacent to the Control Region in Crocodile, Turtle, and Tuatara
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Conserved tRNA gene cluster in starfish mitochondrial DNA
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Rearrangements of mitochondrial transfer RNA genes in marsupials
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Organization of the Mitochondrial Genome of a Deep-Sea Fish, Gonostoma gracile (Teleostei: Stomiiformes): First Example of Transfer RNA Gene Rearrangements in Bony Fishes
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The Cephalopod Loligo bleekeri Mitochondrial Genome: Multiplied Noncoding Regions and Transposition of tRNA Genes
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Mitochondrial Genomics of Ostariophysan Fishes: Perspectives on Phylogeny and Biogeography
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Complete Mitochondrial DNA Sequence of Tigriopus japonicus (Crustacea: Copepoda)
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Complete sequence of bovine mitochondrial DNA conserved features of the mammalian mitochondrial genome
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A Living Bony Fish which Differs Substantially from all Living and Fossil Osteichthyes
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Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes
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Complete mitochondrial genome amplification
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Complete mitochondrial DNA sequence of the Japanese sardine Sardinops melanostictus +
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Complete mitochondrial DNA sequence of the Japanese eel Anguilla japonica +
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Complete mitochondrial DNA sequence of ayu Plecoglossus altivelis
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Sequences with the potential to form stem-and-loop structures are associated with coding-region duplications in animal mitochondrial DNA.
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The marsupial mitochondrial genome and the evolution of placental mammals.
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Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of the vertebrate genome organization.
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Characteristics and Distribution of Large Tandem Duplications in Brook Stickleback (Culaea inconstans) Mitochondrial DNA
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A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993
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Animal mitochondrial genomes
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Mitogenomic Exploration of Higher Teleostean Phylogenies: A Case Study for Moderate-Scale Evolutionary Genomics with 38 Newly Determined Complete Mitochondrial DNA Sequences
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Phylogenetic performance of mitochondrial protein-coding genes in resolving relationships among vertebrates
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025690openalex-snapshot
Gene rearrangements in snake mitochondrial genomes: highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025706openalex-snapshot
Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026306openalex-snapshot
Complete Sequence of the Mitochondrial DNA of the Primitive Opisthobranch Gastropod Pupa strigosa: Systematic Implication of the Genome Organization
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040442openalex-snapshot
Slipped-strand mispairing: a major mechanism for DNA sequence evolution.
inferredcites →https://doi.org/10.1126/science.3018925openalex-snapshot
Tandem Duplication of D-Loop and Ribosomal RNA Sequences in Lizard Mitochondrial DNA
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Phylogeny of the basal teleosts, with special reference to the Elopomorpha.
inferredcites →https://doi.org/10.1266/ggs.76.311openalex-snapshot
Complete Nucleotide Sequence and Gene Rearrangement of the Mitochondrial Genome of the Japanese Pond Frog Rana nigromaculata.
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Phyletic Studies of Teleostean Fishes, with a Provisional Classification of Living Forms

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inferred← citeshttps://doi.org/10.1186/s12862-023-02166-2openalex-snapshot
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inferred← citeshttps://doi.org/10.1186/s12864-018-4717-7openalex-snapshot
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inferred← citeshttps://doi.org/10.1525/bio.2010.60.6.6openalex-snapshot
A Phylogenomic Perspective on the New Era of Ichthyology
inferred← citeshttps://doi.org/10.1525/bio.2010.60.7.6openalex-snapshot
A Large Aggregation of Liparids at 7703 meters and a Reappraisal of the Abundance and Diversity of Hadal Fish
inferred← citeshttps://doi.org/10.1590/s1415-47572008000200024openalex-snapshot
The complete mitochondrial genome of the pirarucu (Arapaima gigas, Arapaimidae, Osteoglossiformes)
inferred← citeshttps://doi.org/10.1590/s1415-47572008000300027openalex-snapshot
Relationship between mitochondrial gene rearrangements and stability of the origin of light strand replication
inferred← citeshttps://doi.org/10.1643/i2025070openalex-snapshot
Anatomy and Evolution of Bioluminescent Organs in the Gulper Eels (Anguilliformes: Saccopharyngoidea)
inferred← citeshttps://doi.org/10.21203/rs.3.rs-894057/v1openalex-snapshot
Characterization of the mitochondrial Huso huso genome with new aspects into its organization with presence of tandem repeat in the 12SrRNA and tRNA-Glu
inferred← citeshttps://doi.org/10.2331/suisan.72.350openalex-snapshot
Spawning and migratory behavior of the Japanese eel
inferred← citeshttps://doi.org/10.3109/19401730903176896openalex-snapshot
Phylogenetic relationships among three newHemibarbusmitogenome sequences belonging to the subfamily Gobioninae (Teleostei, Cypriniformes, and Cyprinidae)
inferred← citeshttps://doi.org/10.3109/19401736.2011.637109openalex-snapshot
The complete mitochondrial genome of the loggerhead turtleCaretta caretta(Testudines: Cheloniidae): Genome description and phylogenetic considerations
inferred← citeshttps://doi.org/10.3109/19401736.2012.710226openalex-snapshot
Phylogeny of moray eels (Anguilliformes: Muraenidae), with a revised classification of true eels (Teleostei: Elopomorpha: Anguilliformes)
inferred← citeshttps://doi.org/10.3109/19401736.2014.1003922openalex-snapshot
Novel gene arrangement in the mitochondrial genome of Bothus myriaster (Pleuronectiformes: Bothidae): evidence for the Dimer-Mitogenome and Non-random Loss model
inferred← citeshttps://doi.org/10.31390/gradschool_dissertations.2964openalex-snapshot
Evolutionary patterns in snake mitochondrial genomes
inferred← citeshttps://doi.org/10.3374/014.065.0101openalex-snapshot
Phylogenetic Classification of Living and Fossil Ray-Finned Fishes (Actinopterygii)
inferred← citeshttps://doi.org/10.3389/fgene.2022.922634openalex-snapshot
Novel Gene Rearrangement in the Mitochondrial Genome of Three Garra and Insights Into the Phylogenetic Relationships of Labeoninae
inferred← citeshttps://doi.org/10.3389/fmars.2024.1395579openalex-snapshot
Mitochondrial genome analysis reveals phylogenetic insights and gene rearrangements in Parupeneus (Syngnathiformes: Mullidae)
inferred← citeshttps://doi.org/10.3390/ani12182449openalex-snapshot
Complete Mitogenomes of Polypedates Tree Frogs Unveil Gene Rearrangement and Concerted Evolution within Rhacophoridae
inferred← citeshttps://doi.org/10.3390/ani13030362openalex-snapshot
Comparative Mitogenomic Analysis of Two Snake Eels Reveals Irregular Gene Rearrangement and Phylogenetic Implications of Ophichthidae
inferred← citeshttps://doi.org/10.3390/ani13182857openalex-snapshot
Two-Fold ND5 Genes, Three-Fold Control Regions, lncRNA, and the “Missing” ATP8 Found in the Mitogenomes of Polypedates megacephalus (Rhacophridae: Polypedates)
inferred← citeshttps://doi.org/10.3390/ani14050814openalex-snapshot
Comparative Analysis of the Systematics and Evolution of the Pampus Genus of Fish (Perciformes: Stromateidae) Based on Osteology, Population Genetics and Complete Mitogenomes
inferred← citeshttps://doi.org/10.3390/biology12030348openalex-snapshot
Comparative Analysis of Complete Mitochondrial Genome of Ariosoma meeki (Jordan and Snider, 1900), Revealing Gene Rearrangement and the Phylogenetic Relationships of Anguilliformes
inferred← citeshttps://doi.org/10.3390/life15081156openalex-snapshot
The Complete Mitochondrial Genome of a Natural Triploid Crucian Carp Mutant, Carassius auratus var. suogu, and Its Phylogenetic Analysis
inferred← citeshttps://doi.org/10.3724/sp.j.1141.2008.00127openalex-snapshot
Comparison of Mitochondrial Control Region Sequences Between Chelydridae and Platysternidae
inferred← citeshttps://doi.org/10.3897/zookeys.1129.82981openalex-snapshot
A comparison of gene organisations and phylogenetic relationships of all 22 squamate species listed in South Korea using complete mitochondrial DNA
inferred← citeshttps://doi.org/10.5555/1109557.1109619openalex-snapshot
On the tandem duplication-random loss model of genome rearrangement
inferred← citeshttps://doi.org/10.6084/m9.figshare.26619763openalex-snapshot
Additional file 1 of Characterization of the mitochondrial Huso huso genome and new aspects of its organization in the presence of tandem repeats in 12S rRNA
inferred← citeshttps://doi.org/10.70675/3a1152a3z1aa4z4be3z938dz200aadda13c0openalex-snapshot
Évolution des génomes mitochondriaux de plantes : approche de génomique comparative chez Zea mays et Beta vulgaris
inferred← citeshttps://doi.org/10.7717/peerj.7415openalex-snapshot
The revised complete mitogenome sequence of the tree frogPolypedatesmegacephalus(Anura, Rhacophoridae) by next-generation sequencing and phylogenetic analysis
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