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Topology-Bayes versus Clade-Bayes in Phylogenetic Analysis
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1006/clad.1996.0001openalex-snapshot
OPTIMIZATION ALIGNMENT: THE END OF MULTIPLE SEQUENCE ALIGNMENT IN PHYLOGENETICS?
inferredcites →https://doi.org/10.1007/bf02338839openalex-snapshot
Probability Distribution of Molecular Evolutionary Trees: A New Method of Phylogenetic Inference
inferredcites →https://doi.org/10.1007/bf02459467openalex-snapshot
Links between maximum likelihood and maximum parsimony under a simple model of site substitution
inferredcites →https://doi.org/10.1016/j.ympev.2004.09.001openalex-snapshot
Strange bayes indeed: uniform topological priors imply non-uniform clade priors
inferredcites →https://doi.org/10.1016/j.ympev.2005.10.005openalex-snapshot
On the impossibility of uniform priors on clades
inferredcites →https://doi.org/10.1038/35093097openalex-snapshot
Arthropod phylogeny based on eight molecular loci and morphology
inferredcites →https://doi.org/10.1080/10635150290102366openalex-snapshot
Potential Applications and Pitfalls of Bayesian Inference of Phylogeny
inferredcites →https://doi.org/10.1080/10635150390218213openalex-snapshot
Comparing Bootstrap and Posterior Probability Values in the Four-Taxon Case
inferredcites →https://doi.org/10.1080/10635150390235485openalex-snapshot
Reliability of Bayesian Posterior Probabilities and Bootstrap Frequencies in Phylogenetics
inferredcites →https://doi.org/10.1080/10635150500481648openalex-snapshot
Fundamental Differences Between the Methods of Maximum Likelihood and Maximum Posterior Probability in Phylogenetics
inferredcites →https://doi.org/10.1093/molbev/msh014openalex-snapshot
How Meaningful Are Bayesian Support Values?
inferredcites →https://doi.org/10.1093/oso/9780195066982.001.0001openalex-snapshot
Phylogenetic analysis Of Dna sequences
inferredcites →https://doi.org/10.1093/oso/9780198548249.001.0001openalex-snapshot
Models in Phylogeny Reconstruction
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026364openalex-snapshot
Parsimony, Likelihood, and the Role of Models in Molecular Phylogenetics
inferredcites →https://doi.org/10.1093/sysbio/22.3.250openalex-snapshot
A Probability Model for Inferring Evolutionary Trees
inferredcites →https://doi.org/10.1111/j.1096-0031.1999.tb00278.xopenalex-snapshot
Analyzing Large Data Sets in Reasonable Times: Solutions for Composite Optima
inferredcites →https://doi.org/10.1111/j.1096-0031.2006.00096.xopenalex-snapshot
Dynamic homology and the likelihood criterion
inferredcites →https://doi.org/10.1126/science.1065889openalex-snapshot
Bayesian Inference of Phylogeny and Its Impact on Evolutionary Biology
inferredcites →https://doi.org/10.2307/2412970openalex-snapshot
Vicariant Patterns and Historical Explanation in Biogeography
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Molecular systematics of terraranas (Anura: Brachycephaloidea) with an assessment of the effects of alignment and optimality criteria
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Coexistence of free-living amoebae and bacteria in selected South African hospital water distribution systems
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Deciphering and dating the red panda’s ancestry and early adaptive radiation of Musteloidea
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Bayesian estimation of fossil phylogenies and the evolution of early to middle Paleozoic crinoids (Echinodermata)
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Resolving the “ontogeny problem” in vertebrate paleontology
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A Justification for Reporting the Majority-Rule Consensus Tree in Bayesian Phylogenetics
inferred← citeshttps://doi.org/10.1093/bioinformatics/btu461openalex-snapshot
Point estimates in phylogenetic reconstructions
inferred← citeshttps://doi.org/10.1093/molbev/msn250openalex-snapshot
Choice of Topology Estimators in Bayesian Phylogenetic Analysis
inferred← citeshttps://doi.org/10.1093/sysbio/syt029openalex-snapshot
Bayesian Tests of Topology Hypotheses with an Example from Diving Beetles
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlaa142openalex-snapshot
The Namaini, a new weevil tribe with six new genera from South Africa (Coleoptera: Curculionidae: Entiminae)
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlz088openalex-snapshot
Exploring the impact of morphology, multiple sequence alignment and choice of optimality criteria in phylogenetic inference: a case study with the Neotropical orb-weaving spider genus Wagneriana (Araneae: Araneidae)
inferred← citeshttps://doi.org/10.1098/rstb.2008.0164openalex-snapshot
Empirical evaluation of a prior for Bayesian phylogenetic inference
inferred← citeshttps://doi.org/10.1098/rstb.2010.0370openalex-snapshot
The evolution of the diversity of cultures
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Maximum a posteriori probability assignment ( MAP ‐A): an optimality criterion for phylogenetic trees via weighting and dynamic programming
inferred← citeshttps://doi.org/10.1111/cla.12156openalex-snapshot
Hennig's semaphoront concept and the use of ontogenetic stages in phylogenetic reconstruction
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2008.00231.xopenalex-snapshot
Clade support measures and their adequacy
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2009.00281.xopenalex-snapshot
Effects of data incompleteness on the relative performance of parsimony and Bayesian approaches in a supermatrix phylogenetic reconstruction of Mustelidae and Procyonidae (Carnivora)
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The conflation of ignorance and knowledge in the inference of clade posteriors
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Distinctions between optimal and expected support
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Disentangling ribbon worm relationships: multi‐locus analysis supports traditional classification of the phylum Nemertea
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Phylogenetic Analyses: A Toolbox Expanding towards Bayesian Methods
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Systematics and evolution of the orb-weaving spider genus Wagneriana F.O. Pickard-Cambridge, 1904 (Araneae; Araneidae)
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Description and Phylogenetic Relationships of a New Genus and Species of Lizard (Squamata, Gymnophthalmidae) from the Amazonian Rainforest of Northern Brazil
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