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Tightening the girdle: phylotranscriptomics of Polyplacophora

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf00312469openalex-snapshot
Spermiogenesis in Polyplacophora, with special reference to acrosome formation (Mollusca)
inferredcites →https://doi.org/10.1016/j.cub.2011.03.033openalex-snapshot
A Chiton Uses Aragonite Lenses to Form Images
inferredcites →https://doi.org/10.1016/j.dsr2.2016.06.021openalex-snapshot
Deep trees: Woodfall biodiversity dynamics in present and past oceans
inferredcites →https://doi.org/10.1016/j.ympev.2009.07.028openalex-snapshot
Assessing the molluscan hypothesis Serialia (Monoplacophora+Polyplacophora) using novel molecular data
inferredcites →https://doi.org/10.1016/j.ympev.2014.10.019openalex-snapshot
Re-evaluating the phylogeny of Sipuncula through transcriptomics
inferredcites →https://doi.org/10.1016/j.ympev.2020.106996openalex-snapshot
A polyvalent and universal tool for genomic studies in gastropod molluscs (Heterobranchia)
inferredcites →https://doi.org/10.1038/nature10382openalex-snapshot
Phylogenomics reveals deep molluscan relationships
inferredcites →https://doi.org/10.1038/nature10526openalex-snapshot
Resolving the evolutionary relationships of molluscs with phylogenomic tools
inferredcites →https://doi.org/10.1038/nmeth.1923openalex-snapshot
Fast gapped-read alignment with Bowtie 2
inferredcites →https://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferredcites →https://doi.org/10.1038/nprot.2013.084openalex-snapshot
De novo transcript sequence reconstruction from RNA-Seq: reference generation and analysis with Trinity
inferredcites →https://doi.org/10.1071/is10028openalex-snapshot
Evolution in the deep sea: a combined analysis of the earliest diverging living chitons (Mollusca : Polyplacophora : Lepidopleurida)
inferredcites →https://doi.org/10.1071/is13013openalex-snapshot
Chiton phylogeny (Mollusca : Polyplacophora) and the placement of the enigmatic species Choriplax grayi (H. Adams & Angas)
inferredcites →https://doi.org/10.1073/pnas.0602578103openalex-snapshot
Evidence for a clade composed of molluscs with serially repeated structures: Monoplacophorans are related to chitons
inferredcites →https://doi.org/10.1078/1439-6092-00085openalex-snapshot
Towards a phylogeny of chitons (Mollusca, Polyplacophora) based on combined analysis of five molecular loci
inferredcites →https://doi.org/10.1080/00222933.2014.959574openalex-snapshot
Do chitons have a compass? Evidence for magnetic sensitivity in Polyplacophora
inferredcites →https://doi.org/10.1080/00222933.2014.963721openalex-snapshot
Molecular phylogeny of Acanthochitonina (Mollusca: Polyplacophora: Chitonida): three new mitochondrial genomes, rearranged gene orders and systematics
inferredcites →https://doi.org/10.1093/bioinformatics/btm619openalex-snapshot
Phyutility: a phyloinformatics tool for trees, alignments and molecular data
inferredcites →https://doi.org/10.1093/bioinformatics/btn445openalex-snapshot
Empirical profile mixture models for phylogenetic reconstruction
inferredcites →https://doi.org/10.1093/bioinformatics/bts565openalex-snapshot
CD-HIT: accelerated for clustering the next-generation sequencing data
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/bioinformatics/btv351openalex-snapshot
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
inferredcites →https://doi.org/10.1093/molbev/msh112openalex-snapshot
A Bayesian Mixture Model for Across-Site Heterogeneities in the Amino-Acid Replacement Process
inferredcites →https://doi.org/10.1093/molbev/mst010openalex-snapshot
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
inferredcites →https://doi.org/10.1093/molbev/msu236openalex-snapshot
ExaBayes: Massively Parallel Bayesian Tree Inference for the Whole-Genome Era
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/molbev/msy144openalex-snapshot
Exon-Capture-Based Phylogeny and Diversification of the Venomous Gastropods (Neogastropoda, Conoidea)
inferredcites →https://doi.org/10.1093/sysbio/sys004openalex-snapshot
Ultraconserved Elements Anchor Thousands of Genetic Markers Spanning Multiple Evolutionary Timescales
inferredcites →https://doi.org/10.1098/rspb.2018.2684openalex-snapshot
Resolving the relationships of clams and cockles: dense transcriptome sampling drastically improves the bivalve tree of life
inferredcites →https://doi.org/10.1098/rspb.2018.2776openalex-snapshot
A congruent topology for deep gastropod relationships
inferredcites →https://doi.org/10.1101/gr.243212.118openalex-snapshot
OMA standalone: orthology inference among public and custom genomes and transcriptomes
inferredcites →https://doi.org/10.1111/1755-0998.12736openalex-snapshot
Universal target‐enrichment baits for anthozoan (Cnidaria) phylogenomics: New approaches to long‐standing problems
inferredcites →https://doi.org/10.1111/j.1744-7410.2010.00208.xopenalex-snapshot
Egg hull formation in Callochiton dentatus (Mollusca, Polyplacophora): the contribution of microapocrine secretion
inferredcites →https://doi.org/10.1126/science.aad1246openalex-snapshot
Multifunctionality of chiton biomineralized armor with an integrated visual system
inferredcites →https://doi.org/10.1155/2013/239257openalex-snapshot
An Inherited Heteroplasmic Mutation in Mitochondrial Gene COI in a Patient with Prostate Cancer Alters Reactive Oxygen, Reactive Nitrogen and Proliferation
inferredcites →https://doi.org/10.1155/2013/407072openalex-snapshot
The Continuing Debate on Deep Molluscan Phylogeny: Evidence for Serialia (Mollusca, Monoplacophora + Polyplacophora)
inferredcites →https://doi.org/10.1186/1471-2148-14-82openalex-snapshot
Selecting optimal partitioning schemes for phylogenomic datasets
inferredcites →https://doi.org/10.1186/1742-9994-11-7openalex-snapshot
A new sensory organ in “primitive” molluscs (Polyplacophora: Lepidopleurida), and its context in the nervous system of chitons
inferredcites →https://doi.org/10.1186/2047-217x-4-1openalex-snapshot
SmileFinder: a resampling-based approach to evaluate signatures of selection from genome-wide sets of matching allele frequency data in two or more diploid populations
inferredcites →https://doi.org/10.1186/s12859-018-2021-9openalex-snapshot
LocText: relation extraction of protein localizations to assist database curation
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
inferredcites →https://doi.org/10.1186/s12862-014-0204-1openalex-snapshot
Strong genetic structure corresponds to small-scale geographic breaks in the Australian alpine grasshopper Kosciuscola tristis
inferredcites →https://doi.org/10.1186/s12862-019-1573-2openalex-snapshot
A mitogenomic phylogeny of chitons (Mollusca: Polyplacophora)
inferredcites →https://doi.org/10.1186/s13742-015-0089-yopenalex-snapshot
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
inferredcites →https://doi.org/10.1201/9781351115254openalex-snapshot
Biology and Evolution of the Mollusca
inferredcites →https://doi.org/10.1201/9781351115667openalex-snapshot
Biology and Evolution of the Mollusca
inferredcites →https://doi.org/10.1371/journal.pone.0137119openalex-snapshot
Is the Schwabe Organ a Retained Larval Eye? Anatomical and Behavioural Studies of a Novel Sense Organ in Adult Leptochiton asellus (Mollusca, Polyplacophora) Indicate Links to Larval Photoreceptors
inferredcites →https://doi.org/10.1515/9780691197067openalex-snapshot
The Invertebrate Tree of Life
inferredcites →https://doi.org/10.15298/invertzool.14.2.16openalex-snapshot
Anatomy of the many feeding types in polyplacophoran molluscs
inferredcites →https://doi.org/10.2307/1542707openalex-snapshot
Fertilization in Callochiton castaneus (Mollusca)
inferredcites →https://doi.org/10.4003/006.027.0208openalex-snapshot
Morphological Cladistic Analysis as a Model for Character Evaluation in Primitive Living Chitons (Polyplacophora, Lepidopleurina)*
inferredcites →https://doi.org/10.4003/0740-2783-25.1.97openalex-snapshot
Fertilization biology and the evolution of chitons*

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.11646/zootaxa.5704.1.1zenodo-depositor-declared
The Cenozoic European Polyplacophora (Mollusca)
inferred← citeshttps://doi.org/10.1002/jmor.21784openalex-snapshot
Aesthete Pattern Diversity in Chiton Clades (Mollusca: Polyplacophora): Balancing Sensory Structures and Strength in Valve Architecture
inferred← citeshttps://doi.org/10.1007/s41208-023-00648-0openalex-snapshot
Complete Mitochondrial Genome and Phylogenetic Relationships of the Red Sea Chiton Acanthopleura vaillantii Rochebrune, 1882 (Polyplacophora: Chitonida)
inferred← citeshttps://doi.org/10.1007/s42995-023-00207-9openalex-snapshot
Phylogenomic analyses shed light on the relationships of chiton superfamilies and shell-eye evolution
inferred← citeshttps://doi.org/10.1093/mollus/eyag009openalex-snapshot
Scale and spicule morphogenesis in the Chitonida and the phylogenetic relationships in aculiferan molluscs
inferred← citeshttps://doi.org/10.1111/1755-0998.70076openalex-snapshot
Evaluating Probe Design for Phylogenomics Across Taxonomic Scales: First Steps for Applying Ultraconserved Elements in an Understudied Class (Mollusca: Polyplacophora)
inferred← citeshttps://doi.org/10.1111/brv.13157openalex-snapshot
Molluscan systematics: historical perspectives and the way ahead
inferred← citeshttps://doi.org/10.1111/cla.70039openalex-snapshot
Phylogenomic analysis of ultraconserved elements clarifies relationships and morphological evolution in Cryptoplacoidea (Mollusca: Polyplacophora)
inferred← citeshttps://doi.org/10.1111/syen.12684openalex-snapshot
Inconsistent performance of multi‐type genomic data in phylogenomics of neuropteridan insects, with solutions toward conflicting results
inferred← citeshttps://doi.org/10.1126/science.adg2689openalex-snapshot
A morphological basis for path-dependent evolution of visual systems
inferred← citeshttps://doi.org/10.1186/s41936-026-00643-wopenalex-snapshot
Natural selection drives the evolution of chiton mitochondrial genomes: evidence from a resolved phylogenomic framework
inferred← citeshttps://doi.org/10.2108/zs220060openalex-snapshot
Radula and Shell Microstructure Variations are Congruent with a Molecular Estimate of Shallow-Water Japanese Chitons
inferred← citeshttps://doi.org/10.7554/elife.102542openalex-snapshot
Still waters run deep in large-scale genome rearrangements of morphologically conservative Polyplacophora
inferred← citeshttps://doi.org/10.7554/elife.102542.1openalex-snapshot
Still waters run deep: Large scale genome rearrangements in the evolution of morphologically conservative Polyplacophora
inferred← citeshttps://doi.org/10.7554/elife.102542.2openalex-snapshot
Still waters run deep: Large scale genome rearrangements in the evolution of morphologically conservative Polyplacophora
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