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A comprehensive comparison of multiple sequence alignment programs
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1002/pro.5560030314openalex-snapshot
Modular arrangement of proteins as inferred from analysis of homology
inferredcites →https://doi.org/10.1006/jmbi.1996.0679openalex-snapshot
Significant Improvement in Accuracy of Multiple Protein Sequence Alignments by Iterative Refinement as Assessed by Reference to Structural Alignments
inferredcites →https://doi.org/10.1006/jmbi.1998.1853openalex-snapshot
Dynamic sequence databank searching with templates and multiple alignment 1 1Edited by J. Karn
inferredcites →https://doi.org/10.1007/bf02143508openalex-snapshot
A flexible method to align large numbers of biological sequences
inferredcites →https://doi.org/10.1007/bf02603120openalex-snapshot
Progressive sequence alignment as a prerequisitetto correct phylogenetic trees
inferredcites →https://doi.org/10.1016/0022-2836(70)90057-4openalex-snapshot
A general method applicable to the search for similarities in the amino acid sequence of two proteins
inferredcites →https://doi.org/10.1016/0022-2836(87)90316-0openalex-snapshot
A strategy for the rapid multiple alignment of protein sequences
inferredcites →https://doi.org/10.1016/s0022-2836(05)80360-2openalex-snapshot
Basic Local Alignment Search Tool
inferredcites →https://doi.org/10.1073/pnas.85.8.2444openalex-snapshot
Improved tools for biological sequence comparison.
inferredcites →https://doi.org/10.1073/pnas.91.3.1059openalex-snapshot
Hidden Markov models of biological primary sequence information.
inferredcites →https://doi.org/10.1073/pnas.93.22.12098openalex-snapshot
Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
inferredcites →https://doi.org/10.1080/01621459.1937.10503522openalex-snapshot
The Use of Ranks to Avoid the Assumption of Normality Implicit in the Analysis of Variance
inferredcites →https://doi.org/10.1089/cmb.1995.2.459openalex-snapshot
Improving the Practical Space and Time Efficiency of the Shortest-Paths Approach to Sum-of-Pairs Multiple Sequence Alignment
inferredcites →https://doi.org/10.1093/bioinformatics/14.2.164openalex-snapshot
Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.
inferredcites →https://doi.org/10.1093/bioinformatics/14.5.407openalex-snapshot
COFFEE: an objective function for multiple sequence alignments.
inferredcites →https://doi.org/10.1093/bioinformatics/4.3.357openalex-snapshot
A simple method for predicting the secondary structure of globular proteins: implications and accuracy
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/22.22.4768openalex-snapshot
A hidden Markov model that finds genes inE.coliDNA
inferredcites →https://doi.org/10.1093/nar/24.8.1515openalex-snapshot
SAGA: sequence alignment by genetic algorithm
inferredcites →https://doi.org/10.1093/nar/25.24.4876openalex-snapshot
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040138openalex-snapshot
Comparative analysis of multiple protein-sequence alignment methods.
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1093/protein/5.1.35openalex-snapshot
Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling
inferredcites →https://doi.org/10.1101/gr.8.3.268openalex-snapshot
EbEST: An Automated Tool Using Expressed Sequence Tags to Delineate Gene Structure
inferredcites →https://doi.org/10.1126/science.7280687openalex-snapshot
Similar Amino Acid Sequences: Chance or Common Ancestry?
inferredcites →https://doi.org/10.2307/3001946openalex-snapshot
Probability Tables for Individual Comparisons by Ranking Methods
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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A new entomopathogenic fungus, Ophiocordyceps ponerus sp. nov., from China
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Large-scale comparison of protein sequence alignment algorithms with structure alignments
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Multiple Sequence Alignment Using ClustalW and ClustalX
inferred← citeshttps://doi.org/10.1002/0471250953.bi0307s03openalex-snapshot
An Overview of Multiple Sequence Alignment
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Modeling Protein Structure from its Sequence
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Phylogenomic Inference of Protein Molecular Function
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Beyond Simple Homology Searches: Multiple Sequence Alignments and Phylogenetic Trees
inferred← citeshttps://doi.org/10.1002/9780470451496.ch6openalex-snapshot
Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1002/9780470892107.ch12openalex-snapshot
Algorithms for the Alignment of Biological Sequences
inferred← citeshttps://doi.org/10.1002/9780471650126.dob0012.pub2openalex-snapshot
Multiple Alignment
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Computational Methods in Bioinformatics
inferred← citeshttps://doi.org/10.1002/arch.10134openalex-snapshot
Coevolution of insect trypsins and inhibitors
inferred← citeshttps://doi.org/10.1002/arch.20289openalex-snapshot
Insect chymotrypsins: chloromethyl ketone inactivation and substrate specificity relative to possible coevolutional adaptation of insects and plants
inferred← citeshttps://doi.org/10.1002/cpbi.4openalex-snapshot
Studying RNA Homology and Conservation with Infernal: From Single Sequences to RNA Families
inferred← citeshttps://doi.org/10.1002/cpet.9openalex-snapshot
Beyond Simple Homology Searches: Multiple Sequence Alignments and Phylogenetic Trees
inferred← citeshttps://doi.org/10.1002/ece3.11171openalex-snapshot
Roegneria yenchiana: A new species in the Triticeae (Poaceae) from the Hengduan Mountain region
inferred← citeshttps://doi.org/10.1002/humu.20938openalex-snapshot
Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods
inferred← citeshttps://doi.org/10.1002/pro.213openalex-snapshot
Accuracy analysis of multiple structure alignments
inferred← citeshttps://doi.org/10.1002/pro.3290openalex-snapshot
Clustal Omega for making accurate alignments of many protein sequences
inferred← citeshttps://doi.org/10.1002/prot.10043openalex-snapshot
A study on protein sequence alignment quality
inferred← citeshttps://doi.org/10.1002/prot.10163openalex-snapshot
Comparison of sequence and structure alignments for protein domains
inferred← citeshttps://doi.org/10.1002/prot.10293openalex-snapshot
Consistency matrices: Quantified structure alignments for sets of related proteins
inferred← citeshttps://doi.org/10.1002/prot.10317openalex-snapshot
Dynamic fluorescence studies of β‐glycosidase mutants from Sulfolobus solfataricus: Effects of single mutations on protein thermostability
inferred← citeshttps://doi.org/10.1002/prot.10508openalex-snapshot
Gaps in structurally similar proteins: Towards improvement of multiple sequence alignment
inferred← citeshttps://doi.org/10.1002/prot.10520openalex-snapshot
Sequence and structural analysis of cellular retinoic acid‐binding proteins reveals a network of conserved hydrophobic interactions
inferred← citeshttps://doi.org/10.1002/prot.20527openalex-snapshot
BAliBASE 3.0: Latest developments of the multiple sequence alignment benchmark
inferred← citeshttps://doi.org/10.1002/prot.20617openalex-snapshot
Functional restraints on the patterns of amino acid substitutions: Application to sequence–structure homology recognition
inferred← citeshttps://doi.org/10.1002/prot.25329openalex-snapshot
On the relationship between residue structural environment and sequence conservation in proteins
inferred← citeshttps://doi.org/10.1002/prot.70158openalex-snapshot
BioMatics 1.0: A Wasserstein Distance Approach for Next‐Generation Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1006/exnr.2001.7769openalex-snapshot
Vasopressin Gene Expression: Experimental Models and Strategies
inferred← citeshttps://doi.org/10.1006/jmbi.2000.4042openalex-snapshot
T-coffee: a novel method for fast and accurate multiple sequence alignment 1 1Edited by J. Thornton
inferred← citeshttps://doi.org/10.1006/jmbi.2001.5187openalex-snapshot
Towards a reliable objective function for multiple sequence alignments 1 1Edited by J. Karn
inferred← citeshttps://doi.org/10.1006/jmbi.2002.5405openalex-snapshot
An expectation maximization algorithm for training hidden substitution models 1 1Edited by F. Cohen
inferred← citeshttps://doi.org/10.1006/jsbi.2001.4351openalex-snapshot
Structural Conservation in Single-Domain Proteins: Implications for Homology Modeling
inferred← citeshttps://doi.org/10.1007/11415770_16openalex-snapshot
A Polynomial Time Solvable Formulation of Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/11494669_90openalex-snapshot
A Novel Optimization of Profile HMM by a Hybrid Genetic Algorithm
inferred← citeshttps://doi.org/10.1007/11527503_56openalex-snapshot
HGA-COFFEE : Aligning Multiple Sequences by Hybrid Genetic Algorithm
inferred← citeshttps://doi.org/10.1007/11575832_22openalex-snapshot
Application of Clustering Technique in Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/11589990_78openalex-snapshot
A Hidden Markov Model and Immune Particle Swarm Optimization-Based Algorithm for Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/11599128_6openalex-snapshot
Using Secondary Structure Information to Perform Multiple Alignment
inferred← citeshttps://doi.org/10.1007/11732242_12openalex-snapshot
Multiple Sequence Alignment Based on Set Covers
inferred← citeshttps://doi.org/10.1007/11732242_13openalex-snapshot
A Methodology for Determining Amino-Acid Substitution Matrices from Set Covers
inferred← citeshttps://doi.org/10.1007/11732990_15openalex-snapshot
CONTRAlign: Discriminative Training for Protein Sequence Alignment
inferred← citeshttps://doi.org/10.1007/11811305_43openalex-snapshot
Improved Genetic Algorithm for Multiple Sequence Alignment Using Segment Profiles (GASP)
inferred← citeshttps://doi.org/10.1007/3-540-45727-5_1openalex-snapshot
Speeding Up the DIALIGN Multiple Alignment Program by Using the ‘Greedy Alignment of BIOlogical Sequences LIBrary’ (GABIOS-LIB)
inferred← citeshttps://doi.org/10.1007/978-0-387-36721-7_21openalex-snapshot
A Template-Based Mixed-Integer Linear Programming Sequence Alignment Model
inferred← citeshttps://doi.org/10.1007/978-1-4471-5298-9_6openalex-snapshot
Large-Scale Multiple Sequence Alignment and Phylogeny Estimation
inferred← citeshttps://doi.org/10.1007/978-1-59745-398-1_25openalex-snapshot
Protein Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-1-60327-148-6_17openalex-snapshot
Web-Based Resources for Clinical Bioinformatics
inferred← citeshttps://doi.org/10.1007/978-1-61779-582-4_7openalex-snapshot
Alignment Methods: Strategies, Challenges, Benchmarking, and Comparative Overview
inferred← citeshttps://doi.org/10.1007/978-1-62703-646-7_18openalex-snapshot
MSACompro: Improving Multiple Protein Sequence Alignment by Predicted Structural Features
inferred← citeshttps://doi.org/10.1007/978-1-62703-646-7_4openalex-snapshot
Who Watches the Watchmen? An Appraisal of Benchmarks for Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-1-62703-646-7_9openalex-snapshot
Multiple Sequence Alignment Using Probcons and Probalign
inferred← citeshttps://doi.org/10.1007/978-1-84800-269-2_8openalex-snapshot
Applying a User-centered Approach to Interactive Visualisation Design
inferred← citeshttps://doi.org/10.1007/978-1-84800-320-0openalex-snapshot
Sequence Comparison: Theory and Methods
inferred← citeshttps://doi.org/10.1007/978-3-030-57552-6_8openalex-snapshot
Particle Swarm Optimization with Tabu Search Algorithm (PSO-TS) Applied to Multiple Sequence Alignment Problem
inferred← citeshttps://doi.org/10.1007/978-3-030-80352-0_6openalex-snapshot
Interactomes: Experimental and In Silico Approaches
inferred← citeshttps://doi.org/10.1007/978-3-030-81885-2_6openalex-snapshot
Clique, Independent Set, and Vertex Cover
inferred← citeshttps://doi.org/10.1007/978-3-319-24834-9_47openalex-snapshot
A New Approach to Link Prediction in Gene Regulatory Networks
inferred← citeshttps://doi.org/10.1007/978-3-319-41561-1_28openalex-snapshot
Duration-Aware Alignment of Process Traces
inferred← citeshttps://doi.org/10.1007/978-3-319-58163-7_10openalex-snapshot
CSA-X: Modularized Constrained Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-3-319-69900-4_50openalex-snapshot
Efficient and Effective Multiple Protein Sequence Alignment Model Using Dynamic Progressive Approach with Novel Look Back Ahead Scoring System
inferred← citeshttps://doi.org/10.1007/978-3-319-89743-1_17openalex-snapshot
An Efficient Cooperative Method to Solve Multiple Sequence Alignment Problem
inferred← citeshttps://doi.org/10.1007/978-3-319-96451-5_13openalex-snapshot
A Hybrid Bio—Inspired Algorithm for Protein Domain Problems
inferred← citeshttps://doi.org/10.1007/978-3-540-24854-5_45openalex-snapshot
Evolving Better Multiple Sequence Alignments
inferred← citeshttps://doi.org/10.1007/978-3-540-71618-1_3openalex-snapshot
Multiple Sequence Alignment with Evolutionary-Progressive Method
inferred← citeshttps://doi.org/10.1007/978-3-540-71681-5_20openalex-snapshot
Multiple Sequence Alignment Based on Profile Alignment of Intermediate Sequences
inferred← citeshttps://doi.org/10.1007/978-3-540-73556-4_8openalex-snapshot
A New Dynamic Programming Algorithm for Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-3-540-75763-4_10openalex-snapshot
Methods for Analyzing Viral Evolution
inferred← citeshttps://doi.org/10.1007/978-3-540-76725-1_63openalex-snapshot
Incremental Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-3-540-79450-9_8openalex-snapshot
Gapped Extension for Local Multiple Alignment of Interspersed DNA Repeats
inferred← citeshttps://doi.org/10.1007/978-3-540-88869-7_3openalex-snapshot
Information Content of Sets of Biological Sequences Revisited
inferred← citeshttps://doi.org/10.1007/978-3-642-02017-9_4openalex-snapshot
Co-evolution and Information Signals in Biological Sequences
inferred← citeshttps://doi.org/10.1007/978-3-642-04241-6_5openalex-snapshot
PMFastR: A New Approach to Multiple RNA Structure Alignment
inferred← citeshttps://doi.org/10.1007/978-3-642-04962-0_40openalex-snapshot
Multiple Sequence Alignment Based on Chaotic PSO
inferred← citeshttps://doi.org/10.1007/978-3-642-10677-4_17openalex-snapshot
A Novel Method for Progressive Multiple Sequence Alignment Based on Lempel-Ziv
inferred← citeshttps://doi.org/10.1007/978-3-642-16527-6_14openalex-snapshot
Multiple Sequence Alignment Based on ABC_SA
inferred← citeshttps://doi.org/10.1007/978-3-642-24855-9_26openalex-snapshot
PAAA: A Progressive Iterative Alignment Algorithm Based on Anchors
inferred← citeshttps://doi.org/10.1007/978-3-642-31467-4_3openalex-snapshot
SCA: Phonetic Alignment Based on Sound Classes
inferred← citeshttps://doi.org/10.1007/978-3-642-31552-7_26openalex-snapshot
New Distances for Improving Progressive Alignment Algorithm
inferred← citeshttps://doi.org/10.1007/978-3-662-04921-1_6openalex-snapshot
Clique, Independent Set, and Vertex Cover
inferred← citeshttps://doi.org/10.1007/978-3-662-58811-6_4openalex-snapshot
Details zur Analyse der Programme
inferred← citeshttps://doi.org/10.1007/978-81-322-2247-7_42openalex-snapshot
Enzyme Function Classification Based on Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-81-322-2247-7_53openalex-snapshot
Genetic Algorithm with Improved Mutation Operator for Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-81-322-2650-5_10openalex-snapshot
Genetic Algorithm Using Guide Tree in Mutation Operator for Solving Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-981-10-7455-4_4openalex-snapshot
A Hybridization of Artificial Bee Colony with Swarming Approach of Bacterial Foraging Optimization for Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-981-13-0761-4_76openalex-snapshot
An Efficient Bi-Level Discrete PSO Variant for Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1007/978-981-97-3169-5_2openalex-snapshot
Computational Tools for Genomics Data Analysis
inferred← citeshttps://doi.org/10.1007/978-981-99-3761-5_50openalex-snapshot
Deep Learning Algorithms Comparison for Multiple Biological Sequences Alignment
inferred← citeshttps://doi.org/10.1007/s00239-003-2489-3openalex-snapshot
The Peroxidase Gene Family in Plants: A Phylogenetic Overview
inferred← citeshttps://doi.org/10.1007/s00239-004-0149-xopenalex-snapshot
Reevaluation of the Evolutionary Position of Opalinids Based on 18S rDNA,and α- and β-Tubulin Gene Phylogenies
inferred← citeshttps://doi.org/10.1007/s002390010130openalex-snapshot
Detecting Changes in the Functional Constraints of Paralogous Genes
inferred← citeshttps://doi.org/10.1007/s00267-011-9673-9openalex-snapshot
Statistically Integrated Flow and Flood Modelling Compared to Hydrologically Integrated Quantity and Quality Model for Annual Flows in the Regulated Macquarie River in Arid Australia
inferred← citeshttps://doi.org/10.1007/s00606-008-0095-yopenalex-snapshot
Homology in coding and non-coding DNA sequences: a parsimony perspective
inferred← citeshttps://doi.org/10.1007/s00606-011-0548-6openalex-snapshot
Molecular phylogeny of relict-endemic Liquidambar orientalis Mill based on sequence diversity of the chloroplast-encoded matK gene
inferred← citeshttps://doi.org/10.1007/s00606-013-0868-9openalex-snapshot
Comparative molecular phylogenetics of Astragalus L. sections from Turkey with New World Astragalus species using nrDNA ITS sequences
inferred← citeshttps://doi.org/10.1007/s00606-017-1466-zopenalex-snapshot
Molecular phylogeny and genetic diversity of genus Capparis (Capparaceae) based on plastid DNA sequences and ISSR markers
inferred← citeshttps://doi.org/10.1007/s00705-004-0319-6openalex-snapshot
Pelargonium necrotic spot virus: a new member of the genus Tombusvirus
inferred← citeshttps://doi.org/10.1007/s00705-012-1601-7openalex-snapshot
A genome-wide pairwise-identity-based proposal for the classification of viruses in the genus Mastrevirus (family Geminiviridae)
inferred← citeshttps://doi.org/10.1007/s00705-014-1982-xopenalex-snapshot
Revisiting the classification of curtoviruses based on genome-wide pairwise identity
inferred← citeshttps://doi.org/10.1007/s10344-024-01782-7openalex-snapshot
Molecular detection of herpesvirus in a skin lesion of a humpback whale (Megaptera novaeangliae) from the Western Mediterranean Sea
inferred← citeshttps://doi.org/10.1007/s10535-008-0051-2openalex-snapshot
Phylogenetic analysis of Kengyilia species based on nuclear ribosomal DNA internal transcribed spacer sequences
inferred← citeshttps://doi.org/10.1007/s10535-011-0227-zopenalex-snapshot
Nucleotide polymorphism pattern and multiple maternal origin in Thinopyrum intermedium inferred by trnH-psbA sequences
inferred← citeshttps://doi.org/10.1007/s10535-012-0084-4openalex-snapshot
Nucleotide polymorphism pattern and multiple maternal origin in Thinopyrum intermedium inferred by trnH-psbA sequences
inferred← citeshttps://doi.org/10.1007/s10618-005-0017-3openalex-snapshot
Sequential Pattern Mining in Multi-Databases via Multiple Alignment
inferred← citeshttps://doi.org/10.1007/s10658-006-9094-4openalex-snapshot
Detection and identification of the phytoplasma associated with pear decline in Taiwan
inferred← citeshttps://doi.org/10.1007/s10722-011-9788-0openalex-snapshot
Novel and ancient HMW glutenin genes from Aegilops tauschii and their phylogenetic positions
inferred← citeshttps://doi.org/10.1007/s10750-008-9666-8openalex-snapshot
Phylogeny of the genus Hesperodiaptomus (Copepoda) based on nucleotide sequence data of the nuclear ribosomal gene
inferred← citeshttps://doi.org/10.1007/s10791-026-09911-3openalex-snapshot
A comprehensive systematic literature review of multiple sequence alignment algorithms
inferred← citeshttps://doi.org/10.1007/s10989-021-10322-9openalex-snapshot
Evaluation and Designing of Epitopic-Peptide Vaccine Against Bunyamwera orthobunyavirus Using M-Polyprotein Target Sequences
inferred← citeshttps://doi.org/10.1007/s11227-014-1297-4openalex-snapshot
A survey of genome sequence assembly techniques and algorithms using high-performance computing
inferred← citeshttps://doi.org/10.1007/s12010-023-04552-4openalex-snapshot
Phytochemical Screening of Nyctanthes arbor-tristis Plant Extracts and Their Antioxidant and Antibacterial Activity Analysis
inferred← citeshttps://doi.org/10.1007/s12293-015-0157-yopenalex-snapshot
A novel two-level particle swarm optimization approach for efficient multiple sequence alignment
inferred← citeshttps://doi.org/10.1007/s13258-012-0057-1openalex-snapshot
Molecular and cytological evidences for the natural wheatgrass hybrids occurrence and origin in west China
inferred← citeshttps://doi.org/10.1007/s13592-019-00660-5openalex-snapshot
Nucleotide sequence variations may be associated with virulence of deformed wing virus
inferred← citeshttps://doi.org/10.1007/s40858-026-00823-7openalex-snapshot
Morphological characterisation and ITS-based identification of Phytophthora species associated with leaf rot of betelvine (Piper betle L.) in eastern India
inferred← citeshttps://doi.org/10.1007/springerreference_36022openalex-snapshot
Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1016/b978-0-12-820546-4.00005-2openalex-snapshot
Homology modeling: Developing 3D structures of target proteins missing in databases
inferred← citeshttps://doi.org/10.1016/bs.mie.2018.10.016openalex-snapshot
Predicting and visualizing features of CRISPR–Cas systems
inferred← citeshttps://doi.org/10.1016/bs.mie.2019.03.015openalex-snapshot
Exploring the sequence, function, and evolutionary space of protein superfamilies using sequence similarity networks and phylogenetic reconstructions
inferred← citeshttps://doi.org/10.1016/j.abb.2006.11.018openalex-snapshot
Hybrid homology modeling and mutational analysis of cytochrome P450C24A1 (CYP24A1) of the Vitamin D pathway: Insights into substrate specificity and membrane bound structure–function
inferred← citeshttps://doi.org/10.1016/j.asoc.2006.10.012openalex-snapshot
Genetic algorithm with ant colony optimization (GA-ACO) for multiple sequence alignment
inferred← citeshttps://doi.org/10.1016/j.asoc.2006.11.004openalex-snapshot
A novel method for alignment of two nucleic acid sequences using ant colony optimization and genetic algorithms
inferred← citeshttps://doi.org/10.1016/j.bbrc.2003.10.197openalex-snapshot
Identification of a five-pass transmembrane protein family localizing in the Golgi apparatus and the ER
inferred← citeshttps://doi.org/10.1016/j.bbrc.2010.07.103openalex-snapshot
Performance assessment of protein multiple sequence alignment algorithms based on permutation similarity measurement
inferred← citeshttps://doi.org/10.1016/j.bmc.2010.06.043openalex-snapshot
Affinity of aporphines for the human 5-HT2A receptor: Insights from homology modeling and molecular docking studies
inferred← citeshttps://doi.org/10.1016/j.bse.2009.12.033openalex-snapshot
Molecular phylogeny and maternal progenitor implication in the genus Kengyilia (Triticeae: Poaceae): Evidence from COXII intron sequences
inferred← citeshttps://doi.org/10.1016/j.bse.2011.04.011openalex-snapshot
A combined approach using ISSR and ITS analysis for the characterization of Artemisia halodendron from Horqin sandy land, northern China
inferred← citeshttps://doi.org/10.1016/j.bse.2012.10.007openalex-snapshot
Phylogenetic analysis in some Hordeum species (Triticeae; Poaceae) based on two single-copy nuclear genes encoding acetyl-CoA carboxylase
inferred← citeshttps://doi.org/10.1016/j.bse.2013.05.005openalex-snapshot
Phylogeny and molecular evolution of the rbcL gene of St genome in Elymus sensu lato (Poaceae: Triticeae)
inferred← citeshttps://doi.org/10.1016/j.bse.2016.02.035openalex-snapshot
Study of molecular genetic diversity and evolutionary history of medicinally important endangered genus Chlorophytum using DNA barcodes
inferred← citeshttps://doi.org/10.1016/j.bse.2016.10.022openalex-snapshot
Phylogenetic analysis of tetraploid wheat based on nuclear DMC1 gene
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2003.09.002openalex-snapshot
The PRALINE online server: optimising progressive multiple alignment on the web
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2004.02.001openalex-snapshot
An adaptive and iterative algorithm for refining multiple sequence alignment
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2004.12.005openalex-snapshot
MSAID: multiple sequence alignment based on a measure of information discrepancy
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2005.04.007openalex-snapshot
Analyzing functional similarity of protein sequences with discrete wavelet transform
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2014.10.001openalex-snapshot
Three-dimensional protein structure prediction: Methods and computational strategies
inferred← citeshttps://doi.org/10.1016/j.dss.2015.07.001openalex-snapshot
Evaluating user interaction with a web-based group decision support system: A comparison between two clustering methods
inferred← citeshttps://doi.org/10.1016/j.ecoleng.2009.08.002openalex-snapshot
Effects of salt marsh invasion by Spartina alterniflora on sulfate-reducing bacteria in the Yangtze River estuary, China
inferred← citeshttps://doi.org/10.1016/j.eswa.2013.05.066openalex-snapshot
Length of stay prediction for clinical treatment process using temporal similarity
inferred← citeshttps://doi.org/10.1016/j.eswa.2013.08.036openalex-snapshot
Reprint of “Length of stay prediction for clinical treatment process using temporal similarity”
inferred← citeshttps://doi.org/10.1016/j.febslet.2004.05.028openalex-snapshot
Regions of minimal structural variation among members of protein domain superfamilies: application to remote homology detection and modelling using distant relationships
inferred← citeshttps://doi.org/10.1016/j.femsec.2004.04.017openalex-snapshot
Structure and activity of the nitrate-reducing community in the rhizosphere of Lolium perenne and Trifolium repens under long-term elevated atmospheric pCO2
inferred← citeshttps://doi.org/10.1016/j.femsle.2004.12.030openalex-snapshot
Thermostability of ancestral mutants ofCaldococcus noboribetusisocitrate dehydrogenase
inferred← citeshttps://doi.org/10.1016/j.fgb.2006.02.001openalex-snapshot
G-protein and cAMP-mediated signaling in aspergilli: A genomic perspective
inferred← citeshttps://doi.org/10.1016/j.funbio.2010.02.008openalex-snapshot
Genome-wide prediction of G protein-coupled receptors in Verticillium spp.
inferred← citeshttps://doi.org/10.1016/j.gene.2008.05.016openalex-snapshot
Characterization of pairwise and multiple sequence alignment errors
inferred← citeshttps://doi.org/10.1016/j.gene.2008.06.006openalex-snapshot
BCL::Align—Sequence alignment and fold recognition with a custom scoring function online
inferred← citeshttps://doi.org/10.1016/j.gene.2013.07.017openalex-snapshot
Phylogeny and molecular evolution of the Acc1 gene within the StH genome species in Triticeae (Poaceae)
inferred← citeshttps://doi.org/10.1016/j.gene.2013.07.081openalex-snapshot
Molecular evolution and diversity of dimeric alpha-amylase inhibitor gene in Kengyilia species (Triticeae: Poaceae)
inferred← citeshttps://doi.org/10.1016/j.gene.2016.03.043openalex-snapshot
Proteome scale census of major facilitator superfamily transporters in Trichoderma reesei using protein sequence and structure based classification enhanced ranking
inferred← citeshttps://doi.org/10.1016/j.ijpara.2004.09.006openalex-snapshot
Functional analysis and localisation of a delta-class glutathione S-transferase from Sarcoptes scabiei
inferred← citeshttps://doi.org/10.1016/j.ins.2010.11.014openalex-snapshot
Multiple sequence alignment using the Hidden Markov Model trained by an improved quantum-behaved particle swarm optimization
inferred← citeshttps://doi.org/10.1016/j.jmb.2004.04.058openalex-snapshot
3DCoffee: Combining Protein Sequences and Structures within Multiple Sequence Alignments
inferred← citeshttps://doi.org/10.1016/j.meegid.2006.03.004openalex-snapshot
New methods for inferring population dynamics from microbial sequences
inferred← citeshttps://doi.org/10.1016/j.plipres.2004.09.002openalex-snapshot
GDSL family of serine esterases/lipases
inferred← citeshttps://doi.org/10.1016/j.sbi.2005.04.002openalex-snapshot
Multiple sequence alignments
inferred← citeshttps://doi.org/10.1016/j.sbi.2006.04.004openalex-snapshot
Multiple sequence alignment
inferred← citeshttps://doi.org/10.1016/j.sbi.2023.102577openalex-snapshot
Towards the accurate alignment of over a million protein sequences: Current state of the art
inferred← citeshttps://doi.org/10.1016/j.swevo.2017.02.002openalex-snapshot
Multi-objective two-level swarm intelligence approach for multiple RNA sequence-structure alignment
inferred← citeshttps://doi.org/10.1016/j.tcs.2010.10.040openalex-snapshot
Co-evolution and information signals in biological sequences
inferred← citeshttps://doi.org/10.1016/j.tcs.2022.12.033openalex-snapshot
Hardness and approximation of multiple sequence alignment with column score
inferred← citeshttps://doi.org/10.1016/j.virusres.2005.03.003openalex-snapshot
De novo RNA synthesis and homology modeling of the classical swine fever virus RNA polymerase
inferred← citeshttps://doi.org/10.1016/j.ygeno.2008.04.003openalex-snapshot
NcDNAlign: Plausible multiple alignments of non-protein-coding genomic sequences
inferred← citeshttps://doi.org/10.1016/j.ygeno.2017.06.007openalex-snapshot
A review on multiple sequence alignment from the perspective of genetic algorithm
inferred← citeshttps://doi.org/10.1016/j.ympev.2003.08.024openalex-snapshot
Temporal diversification of Mesoamerican cichlid fishes across a major biogeographic boundary
inferred← citeshttps://doi.org/10.1016/j.ympev.2003.09.014openalex-snapshot
Conflicting phylogenies of balsaminoid families and the polytomy in Ericales: combining data in a Bayesian framework
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.07.011openalex-snapshot
Incorporating information from length-mutational events into phylogenetic analysis
inferred← citeshttps://doi.org/10.1016/j.ympev.2005.11.025openalex-snapshot
Multiple origins of the ascidian-Prochloron symbiosis: Molecular phylogeny of photosymbiotic and non-symbiotic colonial ascidians inferred from 18S rDNA sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.10.009openalex-snapshot
Phylogenetic relationships in Leymus (Poaceae: Triticeae) revealed by the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.08.028openalex-snapshot
The oldest fossil evidence of animal parasitism by fungi supports a Cretaceous diversification of fungal–arthropod symbioses
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.11.005openalex-snapshot
Phylogeny of leafcutter ants in the genus Atta Fabricius (Formicidae: Attini) based on mitochondrial and nuclear DNA sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2013.06.012openalex-snapshot
Phylogenetic relationships and Y genome origin in Elymus L. sensu lato (Triticeae; Poaceae) based on single-copy nuclear Acc1 and Pgk1 gene sequences
inferred← citeshttps://doi.org/10.1016/j.ympev.2014.04.016openalex-snapshot
Evolutionary pattern of rDNA following polyploidy in Leymus (Triticeae: Poaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2017.05.015openalex-snapshot
Contrasting evolutionary patterns of multiple loci uncover new aspects in the genome origin and evolutionary history of Leymus (Triticeae; Poaceae)
inferred← citeshttps://doi.org/10.1016/s0014-5793(02)03189-7openalex-snapshot
Quality assessment of multiple alignment programs
inferred← citeshttps://doi.org/10.1016/s0022-2836(02)00972-5openalex-snapshot
A Method for Prediction of the Locations of Linker Regions within Large Multifunctional Proteins, and Application to a Type I Polyketide Synthase
inferred← citeshttps://doi.org/10.1016/s0024-3205(03)00227-3openalex-snapshot
Identification of the binding sites and selectivity of sarpogrelate, a novel 5-HT2 antagonist, to human 5-HT2A, 5-HT2B and 5-HT2C receptor subtypes by molecular modeling
inferred← citeshttps://doi.org/10.1016/s0076-6879(02)47039-5openalex-snapshot
Classification of Plant Thioredoxins by Sequence Similarity and Intron Position
inferred← citeshttps://doi.org/10.1016/s0076-6879(05)95008-8openalex-snapshot
Animal Phylogenomics: Multiple Interspecific Genome Comparisons
inferred← citeshttps://doi.org/10.1016/s0092-8674(03)00273-3openalex-snapshot
Desmoglein 4 in Hair Follicle Differentiation and Epidermal Adhesion
inferred← citeshttps://doi.org/10.1016/s0097-8485(02)00008-6openalex-snapshot
Local weighting schemes for protein multiple sequence alignment
inferred← citeshttps://doi.org/10.1016/s0166-218x(02)00288-3openalex-snapshot
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions
inferred← citeshttps://doi.org/10.1016/s0168-6496(02)00229-5openalex-snapshot
Geochemistry and microbial diversity of a trichloroethene-contaminated Superfund site undergoing intrinsic in situ reductive dechlorination
inferred← citeshttps://doi.org/10.1016/s0303-2647(03)00131-xopenalex-snapshot
Improved Hidden Markov Model training for multiple sequence alignment by a particle swarm optimization—evolutionary algorithm hybrid
inferred← citeshttps://doi.org/10.1016/s0378-1119(01)00461-9openalex-snapshot
Multiple alignment of complete sequences (MACS) in the post-genomic era
inferred← citeshttps://doi.org/10.1016/s0981-9428(03)00063-9openalex-snapshot
Identification and characterization of a third thioredoxin h in poplar
inferred← citeshttps://doi.org/10.1016/s1055-7903(02)00366-4openalex-snapshot
The effects of increasing genetic distance on alignment of, and tree construction from, rDNA internal transcribed spacer sequences
inferred← citeshttps://doi.org/10.1017/cbo9780511806087.006openalex-snapshot
Multiple Sequence Alignment
inferred← citeshttps://doi.org/10.1017/s000748531100006xopenalex-snapshot
A combination of molecular and morphological approaches resolves species in the taxonomically difficult genus Procladius Skuse (Diptera: Chironomidae) despite high intra-specific morphological variation
inferred← citeshttps://doi.org/10.1021/acs.jcim.1c01360openalex-snapshot
PepSeA: Peptide Sequence Alignment and Visualization Tools to Enable Lead Optimization
inferred← citeshttps://doi.org/10.1021/ci500362sopenalex-snapshot
A General Sequence Processing and Analysis Program for Protein Engineering
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