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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf02198846openalex-snapshot
The evolution of stramenopiles and alveolates as derived by “substitution rate calibration» of small ribosomal subunit RNA
inferredcites →https://doi.org/10.1007/bf02407359openalex-snapshot
Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: Calibration of the molecular clock
inferredcites →https://doi.org/10.1038/35030006openalex-snapshot
Structure of the 30S ribosomal subunit
inferredcites →https://doi.org/10.1093/bioinformatics/10.5.569openalex-snapshot
TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
inferredcites →https://doi.org/10.1093/bioinformatics/17.4.383openalex-snapshot
ATV: display and manipulation of annotated phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/9.6.735openalex-snapshot
DCSE, an interactive tool for sequence alignment and secondary structure research
inferredcites →https://doi.org/10.1093/nar/11.1.235-bopenalex-snapshot
Collection of published 5S and 5.8S ribosomal RNA sequences
inferredcites →https://doi.org/10.1093/nar/12.suppl.r133openalex-snapshot
Collection of published 5S and 5.8S ribosomal RNA sequences
inferredcites →https://doi.org/10.1093/nar/18.20.5949openalex-snapshot
‘Compensatory slippage’ in the evolution of ribosomal RNA genes
inferredcites →https://doi.org/10.1093/nar/22.22.4673openalex-snapshot
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
inferredcites →https://doi.org/10.1093/nar/29.24.5017openalex-snapshot
Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA
inferredcites →https://doi.org/10.1093/nar/gkg021openalex-snapshot
The EMBL Nucleotide Sequence Database: major new developments
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040454openalex-snapshot
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
inferredcites →https://doi.org/10.1126/science.289.5481.905openalex-snapshot
The Complete Atomic Structure of the Large Ribosomal Subunit at 2.4 Å Resolution
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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Broad Taxon Sampling of Ciliates Using Mitochondrial Small Subunit Ribosomal DNA
inferred← citeshttps://doi.org/10.1002/9780470570418.ch16openalex-snapshot
Phylogenetic Utility of RNA Structure: Evolution's Arrow and Emergence of Early Biochemistry and Diversified Life
inferred← citeshttps://doi.org/10.1002/9781118010518.ch44openalex-snapshot
Ribosomal RNA Identification in Metagenomic and Metatranscriptomic Datasets
inferred← citeshttps://doi.org/10.1002/9781118010518.ch61openalex-snapshot
Application of Phylogenetic Oligonucleotide Microarrays in Microbial Analysis
inferred← citeshttps://doi.org/10.1002/asia.200600230openalex-snapshot
Energy Landscape of Aptamer/Protein Complexes Studied by Single‐Molecule Force Spectroscopy
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A Hexapod nuclear SSU rRNA secondary‐structure model and catalog of taxon‐specific structural variation
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Environmental selection of protistan plankton communities in hypersaline anoxic deep‐sea basins, E astern M editerranean S ea
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Bioinformatic Tools and Guidelines for the Design of Fluorescence In Situ Hybridization Probes
inferred← citeshttps://doi.org/10.1007/978-1-59745-440-7_15openalex-snapshot
An Introduction to Multiple Sequence Alignment — and the T-Coffee Shop. Beyond Just Aligning Sequences: How Good can you Make your Alignment, and so What?
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Auditory and Vestibular Research
inferred← citeshttps://doi.org/10.1007/978-1-59745-523-7_12openalex-snapshot
Fluorescence “In Situ” Hybridization for the Detection of Biofilm in the Middle Ear and Upper Respiratory Tract Mucosa
inferred← citeshttps://doi.org/10.1007/978-1-60327-136-3_11openalex-snapshot
EST Databases and Web Tools for EST Projects
inferred← citeshttps://doi.org/10.1007/978-1-60327-241-4_1openalex-snapshot
Nucleic Acid Sequence and Structure Databases
inferred← citeshttps://doi.org/10.1007/978-3-642-00952-5_16openalex-snapshot
Why Phylogenetic Trees are Often Quite Robust Against Lateral Transfers
inferred← citeshttps://doi.org/10.1007/s00239-005-0006-6openalex-snapshot
Phylogeny of the Centrohelida Inferred from SSU rRNA, Tubulins, and Actin Genes
inferred← citeshttps://doi.org/10.1007/s00239-010-9409-0openalex-snapshot
Regional Context in the Alignment of Biological Sequence Pairs
inferred← citeshttps://doi.org/10.1007/s00248-006-9166-1openalex-snapshot
A Molecular Approach to Identify Active Microbes in Environmental Eukaryote Clone Libraries
inferred← citeshttps://doi.org/10.1007/s00248-013-0275-3openalex-snapshot
Abundance and Novel Lineages of Thraustochytrids in Hawaiian Waters
inferred← citeshttps://doi.org/10.1007/s00248-014-0377-6openalex-snapshot
Land Use Type Significantly Affects Microbial Gene Transcription in Soil
inferred← citeshttps://doi.org/10.1007/s00253-009-2233-zopenalex-snapshot
Achievements and new knowledge unraveled by metagenomic approaches
inferred← citeshttps://doi.org/10.1007/s00284-015-0848-0openalex-snapshot
New Comparative Analysis Based on the Secondary Structure of SSU-rRNA Gene Reveals the Evolutionary Trend and the Family-Genus Characters of Mobilida (Ciliophora, Peritrichia)
inferred← citeshttps://doi.org/10.1007/s00436-007-0471-5openalex-snapshot
Prokaryotic and eukaryotic features observed on the secondary structures of Giardia SSU rRNAs and its phylogenetic implications
inferred← citeshttps://doi.org/10.1007/s10265-010-0395-5openalex-snapshot
Rate accelerations in nuclear 18S rDNA of mycoheterotrophic and parasitic angiosperms
inferred← citeshttps://doi.org/10.1007/s10267-007-0357-5openalex-snapshot
Molecular phylogeny of an unidentified Haliphthoros-like marine oomycete and Haliphthoros milfordensis inferred from nuclear-encoded small- and large-subunit rRNA genes and mitochondrial-encoded cox2 gene
inferred← citeshttps://doi.org/10.1007/s10750-006-0369-8openalex-snapshot
Phylogenetic relationships of the Chinese sisorid catfishes: a nuclear intron versus mitochondrial gene approach
inferred← citeshttps://doi.org/10.1007/s10750-006-0530-4openalex-snapshot
Grossuana codreanui (Grossu, 1946) and the phylogenetic relationships of the East Balkan genus Grossuana (Radoman, 1973) (Gastropoda: Rissooidea)
inferred← citeshttps://doi.org/10.1007/s10867-009-9154-zopenalex-snapshot
Cardioviral RNA structure logo analysis: entropy, correlations, and prediction
inferred← citeshttps://doi.org/10.1007/s11230-017-9705-9openalex-snapshot
Redescription of Henneguya chaudhuryi (Bajpai & Haldar, 1982) (Myxosporea: Myxobolidae), infecting the gills of the freshwater fish Channa punctata (Bloch) (Perciformes: Channidae) in India
inferred← citeshttps://doi.org/10.1007/s11356-016-8193-9openalex-snapshot
Development of a PCR-free DNA-based assay for the specific detection of Vibrio species in environmental samples by targeting the 16S rRNA
inferred← citeshttps://doi.org/10.1007/s13238-011-1017-2openalex-snapshot
Structural diversity of eukaryotic 18S rRNA and its impact on alignment and phylogenetic reconstruction
inferred← citeshttps://doi.org/10.1007/s13258-011-0098-xopenalex-snapshot
Phylogeny and divergence time estimation of Coreoleuciscus splendidus populations (Teleostei: Cypriniformes) endemic to Korea based on complete mitogenome sequences
inferred← citeshttps://doi.org/10.1007/s13258-011-0139-5openalex-snapshot
Phylogeny and speciation time estimation of two Koreocobitis species (Teleostei; Cypriniformes; Cobitidae) endemic to Korea inferred from their complete mitogenomic sequences
inferred← citeshttps://doi.org/10.1016/b978-0-12-387730-7.00016-4openalex-snapshot
The Use of rRNA Gene Sequence Data in the Classification and Identification of Prokaryotes
inferred← citeshttps://doi.org/10.1016/j.asd.2009.10.003openalex-snapshot
Arthropod phylogeny revisited, with a focus on crustacean relationships
inferred← citeshttps://doi.org/10.1016/j.biochi.2007.08.006openalex-snapshot
Automatic identification of large collections of protein-coding or rRNA sequences
inferred← citeshttps://doi.org/10.1016/j.exppara.2013.07.025openalex-snapshot
Secondary structure prediction for complete rDNA sequences (18S, 5.8S, and 28S rDNA) of Demodex folliculorum, and comparison of divergent domains structures across Acari
inferred← citeshttps://doi.org/10.1016/j.exppara.2014.03.016openalex-snapshot
Typification of virulent and low virulence Babesia bigemina clones by 18S rRNA and rap-1c
inferred← citeshttps://doi.org/10.1016/j.gene.2008.10.012openalex-snapshot
5.8S-28S rRNA interaction and HMM-based ITS2 annotation
inferred← citeshttps://doi.org/10.1016/j.gene.2014.06.044openalex-snapshot
The complete mitogenome of Apocheima cinerarius (Lepidoptera: Geometridae: Ennominae) and comparison with that of other lepidopteran insects
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e30438openalex-snapshot
A c.726C>G (p.Tyr242Ter) nonsense mutation-associated with splicing alteration (NASA) of WDR45 gene underlies β-propeller protein-associated neurodegeneration (BPAN)
inferred← citeshttps://doi.org/10.1016/j.ijpara.2007.03.014openalex-snapshot
The secondary structure of the unusually long 18S ribosomal RNA of the myxozoan Sphaerospora truttae and structural evolutionary trends in the Myxozoa
inferred← citeshttps://doi.org/10.1016/j.jmb.2005.07.005openalex-snapshot
Assessing Protein Co-evolution in the Context of the Tree of Life Assists in the Prediction of the Interactome
inferred← citeshttps://doi.org/10.1016/j.jmb.2007.03.052openalex-snapshot
Exploration of Pairing Constraints Identifies a 9 Base-pair Core within Box C/D snoRNA–rRNA Duplexes
inferred← citeshttps://doi.org/10.1016/j.jmb.2011.08.037openalex-snapshot
Complete Modification Maps for the Cytosolic Small and Large Subunit rRNAs of Euglena gracilis: Functional and Evolutionary Implications of Contrasting Patterns between the Two rRNA Components
inferred← citeshttps://doi.org/10.1016/j.jmb.2012.09.012openalex-snapshot
The Right Angle (RA) Motif: A Prevalent Ribosomal RNA Structural Pattern Found in Group I Introns
inferred← citeshttps://doi.org/10.1016/j.jtbi.2016.03.016openalex-snapshot
Improving the microbial community reconstruction at the genus level by multiple 16S rRNA regions
inferred← citeshttps://doi.org/10.1016/j.marmicro.2007.10.003openalex-snapshot
Molecular phylogeny of Rotaliida (Foraminifera) based on complete small subunit rDNA sequences
inferred← citeshttps://doi.org/10.1016/j.marmicro.2009.06.001openalex-snapshot
Pseudo-cryptic speciation in Braarudosphaera bigelowii (Gran and Braarud) Deflandre
inferred← citeshttps://doi.org/10.1016/j.mycres.2007.11.002openalex-snapshot
Taxonomy, molecular phylogeny, and ultrastructural morphology of Olpidiopsis porphyrae sp. nov. (Oomycetes, straminipiles), a unicellular obligate endoparasite of Bangia and Porphyra spp. (Bangiales, Rhodophyta)
inferred← citeshttps://doi.org/10.1016/j.ode.2005.03.001openalex-snapshot
Identification of evolutionary conserved structural elements in the mt SSU rRNA of Zygaenoidea (Lepidoptera): A comparative sequence analysis
inferred← citeshttps://doi.org/10.1016/j.ode.2008.09.002openalex-snapshot
Phylogeny of Catenulida and support for Platyhelminthes
inferred← citeshttps://doi.org/10.1016/j.parint.2009.12.004openalex-snapshot
Zschokkella hildae Auerbach, 1910: Phylogenetic position, morphology, and location in cultured Atlantic cod
inferred← citeshttps://doi.org/10.1016/j.pedobi.2006.01.001openalex-snapshot
A review of molecular data for the phylogeny of basal hexapods
inferred← citeshttps://doi.org/10.1016/j.pnsc.2009.03.005openalex-snapshot
Monophyly of the ring-forming group in Diplopoda (Myriapoda, Arthropoda) based on SSU and LSU ribosomal RNA sequences
inferred← citeshttps://doi.org/10.1016/j.protis.2004.12.003openalex-snapshot
The Katablepharids are a Distant Sister Group of the Cryptophyta: A Proposal for Katablepharidophyta Divisio Nova/Kathablepharida Phylum Novum Based on SSU rDNA and Beta-Tubulin Phylogeny
inferred← citeshttps://doi.org/10.1016/j.tplants.2008.02.009openalex-snapshot
Diamonds in the rough: mRNA-like non-coding RNAs
inferred← citeshttps://doi.org/10.1016/j.vetpar.2008.01.004openalex-snapshot
Isospora orlovi infection in suckling dromedary camel calves (Camelus dromedarius) in Kenya
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.01.007openalex-snapshot
Higher phylogeny of zygaenid moths (Insecta: Lepidoptera) inferred from nuclear and mitochondrial sequence data and the evolution of larval cuticular cavities for chemical defence
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.09.019openalex-snapshot
Application of the secondary structure model of rRNA for phylogeny: D2–D3 expansion segments of the LSU gene of plant-parasitic nematodes from the family Hoplolaimidae Filipjev, 1934
inferred← citeshttps://doi.org/10.1016/j.ympev.2006.11.017openalex-snapshot
The effect of model choice on phylogenetic inference using mitochondrial sequence data: Lessons from the scorpions
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.01.014openalex-snapshot
Phylogenetic congruence of armored scale insects (Hemiptera: Diaspididae) and their primary endosymbionts from the phylum Bacteroidetes
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.08.006openalex-snapshot
Molecular phylogenetic analysis of class Colpodea (phylum Ciliophora) using broad taxon sampling
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.09.012openalex-snapshot
Variation patterns of the mitochondrial 16S rRNA gene with secondary structure constraints and their application to phylogeny of cyprinine fishes (Teleostei: Cypriniformes)
inferred← citeshttps://doi.org/10.1016/j.ympev.2007.12.025openalex-snapshot
Origin and higher-level relationships of psoroptidian mites (Acari: Astigmata: Psoroptidia): Evidence from three nuclear genes
inferred← citeshttps://doi.org/10.1016/j.ympev.2008.01.031openalex-snapshot
Evolution and phylogeny of the heterogeneous cytosolic SSU rRNA genes in the genus Plasmodium☆
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.01.012openalex-snapshot
Conflicting signal within a single gene confounds syllid phylogeny (Syllidae, Annelida)
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.03.020openalex-snapshot
Divergence times and colonization of the Canary Islands by Gallotia lizards
inferred← citeshttps://doi.org/10.1016/j.ympev.2010.08.023openalex-snapshot
The origins of the giant pill-millipedes from Madagascar (Diplopoda: Sphaerotheriida: Arthrosphaeridae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.01.013openalex-snapshot
Evolution of the 5.8S nrDNA gene and internal transcribed spacers in Carapichea ipecacuanha (Rubiaceae) within a phylogeographic context
inferred← citeshttps://doi.org/10.1016/j.ympev.2011.08.026openalex-snapshot
Molecular evidence of cryptic speciation, historical range expansion, and recent intraspecific hybridization in the Neotropical seasonal forest tree Cedrela fissilis (Meliaceae)
inferred← citeshttps://doi.org/10.1016/j.ympev.2012.08.023openalex-snapshot
MITOS: Improved de novo metazoan mitochondrial genome annotation
inferred← citeshttps://doi.org/10.1016/j.ympev.2018.08.012openalex-snapshot
Molecular phylogeny of marine mites (Acariformes: Halacaridae), the oldest radiation of extant secondarily marine animals
inferred← citeshttps://doi.org/10.1016/s0065-2423(06)43003-1openalex-snapshot
Oligonucleotide Probes for RNA‐Targeted Fluorescence In Situ Hybridization
inferred← citeshttps://doi.org/10.1016/s0065-308x(06)63001-7openalex-snapshot
Phylogenetic Analyses of Parasites in the New Millennium
inferred← citeshttps://doi.org/10.1016/s0076-6879(05)97020-1openalex-snapshot
In Situ Functional Gene Analysis: Recognition of Individual Genes by Fluorescence In Situ Hybridization
inferred← citeshttps://doi.org/10.1016/s1872-2075(08)60056-4openalex-snapshot
Consensus RNA Secondary Structure Prediction Based on Support Vector Machine Classification
inferred← citeshttps://doi.org/10.1016/s1874-5334(06)80011-0openalex-snapshot
Computational Methods in Genome Research
inferred← citeshttps://doi.org/10.1017/s0031182009990710openalex-snapshot
Monophyly of marsupial intraerythrocytic apicomplexan parasites from South America and Australia
inferred← citeshttps://doi.org/10.1017/s0033583506004215openalex-snapshot
RNA structural motifs: building blocks of a modular biomolecule
inferred← citeshttps://doi.org/10.1021/cr050057+openalex-snapshot
Detecting RNA and DNA with Templated Chemical Reactions
inferred← citeshttps://doi.org/10.1038/nature06810openalex-snapshot
Functional metagenomic profiling of nine biomes
inferred← citeshttps://doi.org/10.1038/nature07393openalex-snapshot
Parallel adaptations to high temperatures in the Archaean eon
inferred← citeshttps://doi.org/10.1038/ng.2524openalex-snapshot
A heterozygous moth genome provides insights into herbivory and detoxification
inferred← citeshttps://doi.org/10.1071/mf11027openalex-snapshot
DNA barcoding to support conservation: species identification, genetic structure and biogeography of fishes in the Murray—Darling River Basin, Australia
inferred← citeshttps://doi.org/10.1071/sb06020openalex-snapshot
Multiple sequence alignment for phylogenetic purposes
inferred← citeshttps://doi.org/10.1073/pnas.0404025101openalex-snapshot
Detection of 91 potential conserved plant microRNAs in Arabidopsis thaliana and Oryza sativa identifies important target genes
inferred← citeshttps://doi.org/10.1073/pnas.0606239103openalex-snapshot
Evolution of protein structural classes and protein sequence families
inferred← citeshttps://doi.org/10.1073/pnas.0611557104openalex-snapshot
Global extent of horizontal gene transfer
inferred← citeshttps://doi.org/10.1074/jbc.m607725200openalex-snapshot
Close Packing of Helices 3 and 12 of 16 S rRNA Is Required for the Normal Ribosome Function
inferred← citeshttps://doi.org/10.1080/09670260701327702openalex-snapshot
Characterization ofGrateloupia lanceola(Halymeniales, Rhodophyta), an obscure folioseGrateloupiafrom the Iberian Peninsula, based on morphology, comparative sequence analysis and mycosporine-like amino acid composition
inferred← citeshttps://doi.org/10.1080/10635150600975218openalex-snapshot
Efficient Likelihood Computations with Nonreversible Models of Evolution
inferred← citeshttps://doi.org/10.1080/10635150802161088openalex-snapshot
Phylogeny and Evolution of Glass Sponges (Porifera, Hexactinellida)
inferred← citeshttps://doi.org/10.1093/bioadv/vbac078openalex-snapshot
LinAliFold and CentroidLinAliFold: fast RNA consensus secondary structure prediction for aligned sequences using beam search methods
inferred← citeshttps://doi.org/10.1093/bioinformatics/bti289openalex-snapshot
ProfDist: a tool for the construction of large phylogenetic trees based on profile distances
inferred← citeshttps://doi.org/10.1093/bioinformatics/bti463openalex-snapshot
jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences
inferred← citeshttps://doi.org/10.1093/bioinformatics/btl179openalex-snapshot
HoSeqI: automated homologous sequence identification in gene family databases
inferred← citeshttps://doi.org/10.1093/bioinformatics/btm392openalex-snapshot
PhylArray: phylogenetic probe design algorithm for microarray
inferred← citeshttps://doi.org/10.1093/bioinformatics/btn503openalex-snapshot
Phylogenetic distances are encoded in networks of interacting pathways
inferred← citeshttps://doi.org/10.1093/bioinformatics/btp161openalex-snapshot
Identification of ribosomal RNA genes in metagenomic fragments
inferred← citeshttps://doi.org/10.1093/femsre/fuy040openalex-snapshot
Fluorescence in situ hybridization, a complementary molecular tool for the clinical diagnosis of infectious diseases by intracellular and fastidious bacteria
inferred← citeshttps://doi.org/10.1093/gbe/evp051openalex-snapshot
Elucidating Genome Structure Evolution by Analysis of Isoapostatic Gene Clusters using Statistics of Variance of Gene Distances
inferred← citeshttps://doi.org/10.1093/molbev/msab163openalex-snapshot
Robustness of Phylogenetic Inference to Model Misspecification Caused by Pairwise Epistasis
inferred← citeshttps://doi.org/10.1093/molbev/msi183openalex-snapshot
A Model-Based Approach for Detecting Coevolving Positions in a Molecule
inferred← citeshttps://doi.org/10.1093/molbev/msl006openalex-snapshot
An Improved Statistical Method for Detecting Heterotachy in Nucleotide Sequences
inferred← citeshttps://doi.org/10.1093/molbev/msm012openalex-snapshot
The Complete Chloroplast and Mitochondrial DNA Sequence of Ostreococcus tauri: Organelle Genomes of the Smallest Eukaryote Are Examples of Compaction
inferred← citeshttps://doi.org/10.1093/molbev/msm046openalex-snapshot
A Reversible Jump Method for Bayesian Phylogenetic Inference with a Nonhomogeneous Substitution Model
inferred← citeshttps://doi.org/10.1093/molbev/msn247openalex-snapshot
A Major Clade of Prokaryotes with Ancient Adaptations to Life on Land
inferred← citeshttps://doi.org/10.1093/molbev/msq069openalex-snapshot
Base Pairing Constraints Drive Structural Epistasis in Ribosomal RNA Sequences
inferred← citeshttps://doi.org/10.1093/molbev/msr072openalex-snapshot
Exploring Patterns and Extent of Bias in Estimating Divergence Time from Mitochondrial DNA Sequence Data in a Particular Lineage: A Case Study of Salamanders (Order Caudata)
inferred← citeshttps://doi.org/10.1093/molbev/msu055openalex-snapshot
Placing Environmental Next-Generation Sequencing Amplicons from Microbial Eukaryotes into a Phylogenetic Context
inferred← citeshttps://doi.org/10.1093/mollus/eyr047openalex-snapshot
18S rRNA variability map for Gastropoda
inferred← citeshttps://doi.org/10.1093/nar/gki015openalex-snapshot
The Small Subunit rRNA Modification Database
inferred← citeshttps://doi.org/10.1093/nar/gki089openalex-snapshot
RNAdb--a comprehensive mammalian noncoding RNA database
inferred← citeshttps://doi.org/10.1093/nar/gki535openalex-snapshot
Recurrent structural RNA motifs, Isostericity Matrices and sequence alignments
inferred← citeshttps://doi.org/10.1093/nar/gkl129openalex-snapshot
The internal transcribed spacer 2 database--a web server for (not only) low level phylogenetic analyses
inferred← citeshttps://doi.org/10.1093/nar/gkl133openalex-snapshot
Tests of rRNA hybridization to microarrays suggest that hybridization characteristics of oligonucleotide probes for species discrimination cannot be predicted
inferred← citeshttps://doi.org/10.1093/nar/gkl154openalex-snapshot
Computer simulation of chaperone effects of Archaeal C/D box sRNA binding on rRNA folding
inferred← citeshttps://doi.org/10.1093/nar/gkl327openalex-snapshot
Complete DNA sequences of the mitochondrial genomes of the pathogenic yeasts Candida orthopsilosis and Candida metapsilosis: insight into the evolution of linear DNA genomes from mitochondrial telomere mutants
inferred← citeshttps://doi.org/10.1093/nar/gkl770openalex-snapshot
TBestDB: a taxonomically broad database of expressed sequence tags (ESTs)
inferred← citeshttps://doi.org/10.1093/nar/gkl858openalex-snapshot
PATRIC: The VBI PathoSystems Resource Integration Center
inferred← citeshttps://doi.org/10.1093/nar/gkl926openalex-snapshot
RNAdb 2.0--an expanded database of mammalian non-coding RNAs
inferred← citeshttps://doi.org/10.1093/nar/gkm057openalex-snapshot
Deciphering RNA structural diversity and systematic phylogeny from microbial metagenomes
inferred← citeshttps://doi.org/10.1093/nar/gkm101openalex-snapshot
Evolutionary rates vary among rRNA structural elements
inferred← citeshttps://doi.org/10.1093/nar/gkm160openalex-snapshot
RNAmmer: consistent and rapid annotation of ribosomal RNA genes
inferred← citeshttps://doi.org/10.1093/nar/gkm245openalex-snapshot
Elastic properties of ribosomal RNA building blocks: molecular dynamics of the GTPase-associated center rRNA
inferred← citeshttps://doi.org/10.1093/nar/gkm541openalex-snapshot
Short pyrosequencing reads suffice for accurate microbial community analysis
inferred← citeshttps://doi.org/10.1093/nar/gkm864openalex-snapshot
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
inferred← citeshttps://doi.org/10.1093/nar/gkn174openalex-snapshot
R-Coffee: a method for multiple alignment of non-coding RNA
inferred← citeshttps://doi.org/10.1093/nar/gkn220openalex-snapshot
NOBAI: a web server for character coding of geometrical and statistical features in RNA structure
inferred← citeshttps://doi.org/10.1093/nar/gkn592openalex-snapshot
Cosegregation of novel mitochondrial 16S rRNA gene mutations with the age-associated T414G variant in human cybrids
inferred← citeshttps://doi.org/10.1093/nar/gkn911openalex-snapshot
The UA_handle: a versatile submotif in stable RNA architectures†
inferred← citeshttps://doi.org/10.1093/nar/gkp011openalex-snapshot
Frequency and isostericity of RNA base pairs
inferred← citeshttps://doi.org/10.1093/nar/gkp468openalex-snapshot
Classification and energetics of the base-phosphate interactions in RNA
inferred← citeshttps://doi.org/10.1093/nar/gkq031openalex-snapshot
Recurrent RNA motifs as probes for studying RNA-protein interactions in the ribosome
inferred← citeshttps://doi.org/10.1099/ijs.0.63188-0openalex-snapshot
‘Candidatus Burkholderia calva’ and ‘Candidatus Burkholderia nigropunctata’ as leaf gall endosymbionts of African Psychotria
inferred← citeshttps://doi.org/10.1099/mic.0.27392-0openalex-snapshot
The complete genomes of Lactobacillus plantarum and Lactobacillus johnsonii reveal extensive differences in chromosome organization and gene content
inferred← citeshttps://doi.org/10.1101/gr.2674004openalex-snapshot
The Complete Genome and Proteome of Mycoplasma mobile
inferred← citeshttps://doi.org/10.1109/bibm.2007.11openalex-snapshot
Computational Identification of Protein-Coding Sequences by Comparative Analysis
inferred← citeshttps://doi.org/10.1109/bibm.2007.27openalex-snapshot
A Haplotyping Algorithm for Non-recombinant Pedigree Data Containing Missing Members
inferred← citeshttps://doi.org/10.1109/occbio.2009.15openalex-snapshot
Understanding Sequence Variability of RNA Motifs Using Geometric Search and IsoDiscrepancy Matrices
inferred← citeshttps://doi.org/10.1111/1574-6941.12100openalex-snapshot
Geographic distance and ecosystem size determine the distribution of smallest protists in lacustrine ecosystems
inferred← citeshttps://doi.org/10.1111/1755-0998.12640openalex-snapshot
A new sequence data set of SSU rRNA gene for Scleractinia and its phylogenetic and ecological applications
inferred← citeshttps://doi.org/10.1111/j.1096-0031.2004.00041.xopenalex-snapshot
The phylogenetic position of the comb jellies (Ctenophora) and the importance of taxonomic sampling
inferred← citeshttps://doi.org/10.1111/j.1096-3642.2006.00222.xopenalex-snapshot
Phylogenetic analysis of Zygaenoidea small-subunit rRNA structural variation implies initial oligophagy on cyanogenic host plants in larvae of the moth genus Zygaena (Insecta: Lepidoptera)
inferred← citeshttps://doi.org/10.1111/j.1365-2583.2006.00689.xopenalex-snapshot
Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements
inferred← citeshttps://doi.org/10.1111/j.1365-2915.2008.00722.xopenalex-snapshot
Genetic differences in internal transcribed spacer 1 between Dermanyssus gallinae from wild birds and domestic chickens
inferred← citeshttps://doi.org/10.1111/j.1439-0469.2008.00474.xopenalex-snapshot
A phylogeny of anisopterous dragonflies (Insecta, Odonata) using mtRNA genes and mixed nucleotide/doublet models
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2005.00216.xopenalex-snapshot
Filling a gap in the phylogeny of flatworms: relationships within the Rhabdocoela (Platyhelminthes), inferred from 18S ribosomal DNA sequences
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2007.00295.xopenalex-snapshot
Dismissal of Acoelomorpha: Acoela and Nemertodermatida are separate early bilaterian clades
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2008.00368.xopenalex-snapshot
Testing for misleading effects in the phylogenetic reconstruction of ancient lineages of hexapods: influence of character dependence and character choice in analyses of 28S rRNA sequences
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2012.00568.xopenalex-snapshot
Evaluating molecular support for and against the monophyly of the Peritrichia and phylogenetic relationships within the Mobilida (Ciliophora, Oligohymenophorea)
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2006.00279.xopenalex-snapshot
A REVISED CLASSIFICATION OF THE DICTYOTEAE (DICTYOTALES, PHAEOPHYCEAE) BASED ON rbcL AND 26S RIBOSOMAL DNA SEQUENCE ANALYSES1
inferred← citeshttps://doi.org/10.1111/j.1529-8817.2012.01132.xopenalex-snapshot
CRYPTIC AND PSEUDO‐CRYPTIC DIVERSITY IN DIATOMS—WITH DESCRIPTIONS OF PSEUDO‐NITZSCHIA HASLEANA SP. NOV. AND P. FRYXELLIANA SP. NOV.1
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2007.00290.xopenalex-snapshot
Balanion masanensis n. sp. (Ciliophora: Prostomatea) from the Coastal Waters of Korea: Morphology and Small Subunit Ribosomal RNA Gene Sequence
inferred← citeshttps://doi.org/10.1111/j.1550-7408.2009.00445.xopenalex-snapshot
A Description of a New “Amoebozoan” Isolated from the American Lobster, Homarus americanus
inferred← citeshttps://doi.org/10.1111/j.1755-0998.2009.02795.xopenalex-snapshot
A PCR‐based method for diet analysis in freshwater organisms using 18S rDNA barcoding on faeces
inferred← citeshttps://doi.org/10.1111/jeu.12057openalex-snapshot
Morphological and Ribosomal DNA ‐based Characterization of Six Antarctic Ciliate Morphospecies from the Amundsen Sea with Phylogenetic Analyses
inferred← citeshttps://doi.org/10.1111/jeu.12195openalex-snapshot
Revision of Strombidium paracalkinsi (Ciliophora: Oligotrichea: Oligotrichia), with Comparison of Strombidiids Bearing Thigmotactic Membranelles
inferred← citeshttps://doi.org/10.1111/jpy.12615openalex-snapshot
Molecular phylogeny, systematics, and revision of the type species of Lobomonas, L. francei (Volvocales, Chlorophyta) and closely related taxa
inferred← citeshttps://doi.org/10.1111/zsc.12150openalex-snapshot
New considerations on the phylogeny of cyrtophorian ciliates (Protozoa, Ciliophora): expanded sampling to understand their evolutionary relationships
inferred← citeshttps://doi.org/10.1128/9781555815882.ch13openalex-snapshot
Phylogenetic and Genomic Analysis
inferred← citeshttps://doi.org/10.1128/9781555816834.ch31openalex-snapshot
Broad‐Range PCR for Detection and Identification of Bacteria
inferred← citeshttps://doi.org/10.1128/aem.02269-07openalex-snapshot
Development of a Strain-Specific Molecular Method for Quantitating Individual Campylobacter Strains in Mixed Populations
inferred← citeshttps://doi.org/10.1128/aem.72.3.2221-2225.2006openalex-snapshot
Evaluation of 23S rRNA PCR Primers for Use in Phylogenetic Studies of Bacterial Diversity
inferred← citeshttps://doi.org/10.1128/genomea.01069-15openalex-snapshot
Draft Genome Sequence and Gene Annotation ofStemphylium lycopersiciStrain CIDEFI-216
inferred← citeshttps://doi.org/10.1128/jb.00182-11openalex-snapshot
Complete Genome Sequence and Immunoproteomic Analyses of the Bacterial Fish Pathogen Streptococcus parauberis
inferred← citeshttps://doi.org/10.1128/jb.00923-09openalex-snapshot
Distribution and Phylogeny of Light-Oxygen-Voltage-Blue-Light-Signaling Proteins in the Three Kingdoms of Life
inferred← citeshttps://doi.org/10.1128/jb.188.7.2533-2542.2006openalex-snapshot
Comparative Genomic Analysis of Three Strains of Ehrlichia ruminantium Reveals an Active Process of Genome Size Plasticity
inferred← citeshttps://doi.org/10.1128/jvi.01078-08openalex-snapshot
Bioinformatic and Physical Characterizations of Genome-Scale Ordered RNA Structure in Mammalian RNA Viruses
inferred← citeshttps://doi.org/10.1134/s1022795414090051openalex-snapshot
5.8S rDNA variability in Allium species belonging to the third evolutionary group
inferred← citeshttps://doi.org/10.1155/2010/246738openalex-snapshot
Analysis of Transcripts Expressed in One-Day-Old Larvae and Fifth Instar Silk Glands of Tasar Silkworm,Antheraea mylitta
inferred← citeshttps://doi.org/10.1155/2012/672462openalex-snapshot
Distinct MicroRNA Subcellular Size and Expression Patterns in Human Cancer Cells
inferred← citeshttps://doi.org/10.11606/d.3.2017.tde-20062017-094827openalex-snapshot
Produção de polihidroxibutirato (PHB) por bactérias metilotróficas.
inferred← citeshttps://doi.org/10.11606/d.87.2011.tde-10022012-162729openalex-snapshot
Diversidade e estrutura da comunidade bacteriana associada às armadilhas da planta carnívora Utricularia gibba (Lentibulariaceae) e ao ambiente aquático.
inferred← citeshttps://doi.org/10.1163/156854109x404580openalex-snapshot
Morphology, molecular characterisation and systematic position of Hemiplectus muscorum Zell, 1991 (Nematoda: Plectida)
inferred← citeshttps://doi.org/10.1163/15685411-00002952openalex-snapshot
Description of Phasmarhabditis californica n. sp. and first report of P. papillosa (Nematoda: Rhabditidae) from invasive slugs in the USA
inferred← citeshttps://doi.org/10.1163/1937240x-00002179openalex-snapshot
Phylogenetic analysis and systematic revision of Remipedia (Nectiopoda) from Bayesian analysis of molecular data
inferred← citeshttps://doi.org/10.11646/zootaxa.2244.1.1openalex-snapshot
Molecular phylogeny, classification, and biogeography of snakes of the Family Leptotyphlopidae (Reptilia, Squamata)
inferred← citeshttps://doi.org/10.1177/117693430700300026openalex-snapshot
Minimizing Contradictions on Circular Order of Phylogenic Trees
inferred← citeshttps://doi.org/10.1186/1471-2105-6-151openalex-snapshot
AutoFACT: An Auto matic F unctional A nnotation and C lassification T ool
inferred← citeshttps://doi.org/10.1186/1471-2105-6-61openalex-snapshot
Graphical representation of ribosomal RNA probe accessibility data using ARB software package
inferred← citeshttps://doi.org/10.1186/1471-2105-9-474openalex-snapshot
RNAalifold: improved consensus structure prediction for RNA alignments
inferred← citeshttps://doi.org/10.1186/1471-2148-10-141openalex-snapshot
Mitochondrial genomes of acrodont lizards: timing of gene rearrangements and phylogenetic and biogeographic implications
inferred← citeshttps://doi.org/10.1186/1471-2148-10-235openalex-snapshot
Phylogenetic position of the acariform mites: sensitivity to homology assessment under total evidence
inferred← citeshttps://doi.org/10.1186/1471-2148-8-14openalex-snapshot
Broadly sampled multigene trees of eukaryotes
inferred← citeshttps://doi.org/10.1186/1471-2148-8-69openalex-snapshot
Molecular evolution of rDNA in early diverging Metazoa: First comparative analysis and phylogenetic application of complete SSU rRNA secondary structures in Porifera
inferred← citeshttps://doi.org/10.1186/1471-2148-9-119openalex-snapshot
Can comprehensive background knowledge be incorporated into substitution models to improve phylogenetic analyses? A case study on major arthropod relationships
inferred← citeshttps://doi.org/10.1186/1471-2148-9-187openalex-snapshot
An updated 18S rRNA phylogeny of tunicates based on mixture and secondary structure models
inferred← citeshttps://doi.org/10.1186/1471-2148-9-95openalex-snapshot
Analysis of complete mitochondrial genomes from extinct and extant rhinoceroses reveals lack of phylogenetic resolution
inferred← citeshttps://doi.org/10.1186/1471-2164-12-114openalex-snapshot
Mycoplasma mycoides, from "mycoides Small Colony" to "capri". A microevolutionary perspective
inferred← citeshttps://doi.org/10.1186/1471-2164-12-444openalex-snapshot
WebMGA: a customizable web server for fast metagenomic sequence analysis
inferred← citeshttps://doi.org/10.1186/1471-2164-13-481openalex-snapshot
Genome wide identification of chilling responsive microRNAs in Prunus persica
inferred← citeshttps://doi.org/10.1186/1471-2164-15-522openalex-snapshot
Genomewide comparison and novel ncRNAs of Aquificales
inferred← citeshttps://doi.org/10.1186/1471-2164-8-481openalex-snapshot
Conservation and divergence of microRNAs in Populus
inferred← citeshttps://doi.org/10.1186/1471-2180-9-68openalex-snapshot
Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria
inferred← citeshttps://doi.org/10.1186/1471-230x-9-95openalex-snapshot
Microbial community analysis reveals high level phylogenetic alterations in the overall gastrointestinal microbiota of diarrhoea-predominant irritable bowel syndrome sufferers
inferred← citeshttps://doi.org/10.1186/gb-2007-8-8-r171openalex-snapshot
PyCogent: a toolkit for making sense from sequence
inferred← citeshttps://doi.org/10.1186/gb-2012-13-7-r60openalex-snapshot
A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples
inferred← citeshttps://doi.org/10.1186/s12862-015-0458-2openalex-snapshot
Origin and higher-level diversification of acariform mites – evidence from nuclear ribosomal genes, extensive taxon sampling, and secondary structure alignment
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