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ModelTest Server: a web-based tool for the statistical selection of models of nucleotide substitution online

https://doi.org/10.1093/nar/gkl042
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471250953.bi0605s00openalex-snapshot
Using MODELTEST and PAUP * to Select a Model of Nucleotide Substitution
inferredcites →https://doi.org/10.1007/978-1-4612-0919-5_38openalex-snapshot
Information Theory and an Extension of the Maximum Likelihood Principle
inferredcites →https://doi.org/10.1007/978-1-4612-1694-0_15openalex-snapshot
Information Theory and an Extension of the Maximum Likelihood Principle
inferredcites →https://doi.org/10.1007/bf02101694openalex-snapshot
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
inferredcites →https://doi.org/10.1007/pl00006131openalex-snapshot
Evolution of the Mitochondrial Cytochrome Oxidase II Gene in Collembola
inferredcites →https://doi.org/10.1016/0169-5347(96)10041-0openalex-snapshot
Among-site rate variation and its impact on phylogenetic analyses
inferredcites →https://doi.org/10.1016/j.tree.2003.10.013openalex-snapshot
Model selection in ecology and evolution
inferredcites →https://doi.org/10.1017/cbo9780511819049.012openalex-snapshot
Selecting models of evolution
inferredcites →https://doi.org/10.1080/01621459.1995.10476592openalex-snapshot
A Reference Bayesian Test for Nested Hypotheses and its Relationship to the Schwarz Criterion
inferredcites →https://doi.org/10.1080/03610927808827599openalex-snapshot
Further analysis of the data by Akaike's information criterion and the finite corrections
inferredcites →https://doi.org/10.1080/10635150490522304openalex-snapshot
Model Selection and Model Averaging in Phylogenetics: Advantages of Akaike Information Criterion and Bayesian Approaches Over Likelihood Ratio Tests
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/bti263openalex-snapshot
ProtTest: selection of best-fit models of protein evolution
inferredcites →https://doi.org/10.1093/biomet/76.2.297openalex-snapshot
Regression and Time Series Model Selection in Small Samples
inferredcites →https://doi.org/10.1093/sysbio/46.4.590openalex-snapshot
NEXUS: An Extensible File Format for Systematic Information
inferredcites →https://doi.org/10.1109/tac.1974.1100705openalex-snapshot
A new look at the statistical model identification
inferredcites →https://doi.org/10.1146/annurev.ecolsys.28.1.437openalex-snapshot
Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood
inferredcites →https://doi.org/10.1146/annurev.ecolsys.36.102003.152633openalex-snapshot
Model Selection in Phylogenetics
inferredcites →https://doi.org/10.1177/0049124199027003002openalex-snapshot
A Critique of the Bayesian Information Criterion for Model Selection
inferredcites →https://doi.org/10.1177/0049124199027003005openalex-snapshot
Bayes Factors and BIC
inferredcites →https://doi.org/10.1214/aos/1176344136openalex-snapshot
Estimating the Dimension of a Model
inferredcites →https://doi.org/10.2307/1268842openalex-snapshot
Akaike Information Criterion Statistics
inferredcites →https://doi.org/10.2307/2348776openalex-snapshot
Akaike Information Criterion Statistics.
inferredcites →https://doi.org/10.2307/3802723openalex-snapshot
Model Selection and Multimodel Inference: A Practical Information-Theoretic Approach

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inferred← citeshttps://doi.org/10.1017/s0007485312000260openalex-snapshot
Morphology and phylogeny ofReticulitermessp. (Isoptera, Rhinotermitidae) from Cyprus
inferred← citeshttps://doi.org/10.1017/s0024282911000600openalex-snapshot
A new Agonimia from Europe with a flabelliform thallus
inferred← citeshttps://doi.org/10.1017/s0024282912000515openalex-snapshot
ITS rDNA data confirm a delimitation ofBacidina arnoldianaandB. sulphurellaand support a description of a new species within the genusBacidina
inferred← citeshttps://doi.org/10.1017/s002428291700041xopenalex-snapshot
Ricasolia amplissima(Lobariaceae): one species, three genotypes and a new taxon from south-eastern Alaska
inferred← citeshttps://doi.org/10.1021/bm900312copenalex-snapshot
Mechanical Behavior of Silk During the Evolution of Orb-Web Spinning Spiders
inferred← citeshttps://doi.org/10.1038/nmeth.4285openalex-snapshot
ModelFinder: fast model selection for accurate phylogenetic estimates
inferred← citeshttps://doi.org/10.1038/s41598-017-09769-yopenalex-snapshot
Establishment of the most comprehensive ITS2 barcode database to date of the traditional medicinal plant Rhodiola (Crassulaceae)
inferred← citeshttps://doi.org/10.1038/s41598-019-56321-1openalex-snapshot
RETRACTED ARTICLE: High diversity of Morchella and a novel lineage of the Esculenta clade from the north Qinling Mountains revealed by GCPSR-based study
inferred← citeshttps://doi.org/10.1038/s41598-021-93655-1openalex-snapshot
Retraction Note: High diversity of Morchella and a novel lineage of the Esculenta clade from the north Qinling Mountains revealed by GCPSR-based study
inferred← citeshttps://doi.org/10.1038/s42003-021-01650-zopenalex-snapshot
Comparative multi-omics analyses reveal differential expression of key genes relevant for parasitism between non-encapsulated and encapsulated Trichinella
inferred← citeshttps://doi.org/10.1038/s42003-022-03504-8openalex-snapshot
Neural activities in music frogs reveal call variations and phylogenetic relationships within the genus Nidirana
inferred← citeshttps://doi.org/10.1038/srep06892openalex-snapshot
Survival of the anaerobic fungus Orpinomyces sp. strain C1A after prolonged air exposure
inferred← citeshttps://doi.org/10.1071/mf07120openalex-snapshot
Phylogenetic analysis of mtDNA sequences suggests revision of humpback dolphin (Sousa spp.) taxonomy is needed
inferred← citeshttps://doi.org/10.1071/sb14034openalex-snapshot
Molecular data consistently recover a ‘Queensland clade’ of Synostemon (Phyllanthaceae, Phyllantheae) with distinctive floral morphology
inferred← citeshttps://doi.org/10.1071/sb16008openalex-snapshot
Morphological and molecular data show Synostemon trachyspermus (Phyllanthaceae, Phyllantheae) to be a heterogeneous species assemblage
inferred← citeshttps://doi.org/10.1071/sb18029openalex-snapshot
Morphological and molecular data show an enlarged tropical Australian radiation in Synostemon (Phyllanthaceae, Phyllantheae) previously concealed by heteromorphic species concepts
inferred← citeshttps://doi.org/10.1073/pnas.0709936105openalex-snapshot
DNA barcoding the floras of biodiversity hotspots
inferred← citeshttps://doi.org/10.1080/00288233.2018.1461658openalex-snapshot
Identification of Epichloë endophytes associated with wild barley ( Hordeum brevisubulatum ) and characterisation of their alkaloid biosynthesis
inferred← citeshttps://doi.org/10.1080/10635150802559257openalex-snapshot
Phylogeny of the Beaked Whale Genus Mesoplodon (Ziphiidae: Cetacea) Revealed by Nuclear Introns: Implications for the Evolution of Male Tusks
inferred← citeshttps://doi.org/10.1080/24701394.2026.2691597openalex-snapshot
Genetic diversity, population genetic structure and demographic history of two actiniarian species ( Anthopleura xanthogrammica and Diadumene lineata ) along the Chinese coastline
inferred← citeshttps://doi.org/10.1086/bblv225n1p24openalex-snapshot
Multiple Colonizations Lead to Cryptic Biodiversity in an Island Ecosystem: Comparative Phylogeography of Anchialine Shrimp Species in the Ryukyu Archipelago, Japan
inferred← citeshttps://doi.org/10.1093/aob/mcab133openalex-snapshot
Comparative phylogeography study reveals introgression and incomplete lineage sorting during rapid diversification of Rhodiola
inferred← citeshttps://doi.org/10.1093/femsle/fnx135openalex-snapshot
Phylogenetic diversification and developmental implications of poly-(R)-3-hydroxyalkanoate gene cluster assembly in prokaryotes
inferred← citeshttps://doi.org/10.1093/hr/uhae343openalex-snapshot
Deactivating mutations in the catalytic site of a companion serine carboxypeptidase-like acyltransferase enhance catechin galloylation in Camellia plants
inferred← citeshttps://doi.org/10.1093/icb/icm040openalex-snapshot
Can we ever identify the Urmetazoan?
inferred← citeshttps://doi.org/10.1093/molbev/msn056openalex-snapshot
Adaptive Evolution of Hepcidin Genes in Antarctic Notothenioid Fishes
inferred← citeshttps://doi.org/10.1093/molbev/msn197openalex-snapshot
Intraphylum Diversity and Complex Evolution of Cyanobacterial Aminoacyl-tRNA Synthetases
inferred← citeshttps://doi.org/10.1093/molbev/msq155openalex-snapshot
Clonality and Recombination in the Life History of an Asexual Arbuscular Mycorrhizal Fungus
inferred← citeshttps://doi.org/10.1093/molbev/msr310openalex-snapshot
The Voltage-Gated Potassium Channel Subfamily KQT Member 4 (KCNQ4) Displays Parallel Evolution in Echolocating Bats
inferred← citeshttps://doi.org/10.1093/molbev/msu240openalex-snapshot
Adaptive Functional Diversification of Lysozyme in Insectivorous Bats
inferred← citeshttps://doi.org/10.1093/nar/gkm877openalex-snapshot
SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis)
inferred← citeshttps://doi.org/10.1093/nar/gkn075openalex-snapshot
Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction
inferred← citeshttps://doi.org/10.1093/nargab/lqaa041openalex-snapshot
A new phylogenetic protocol: dealing with model misspecification and confirmation bias in molecular phylogenetics
inferred← citeshttps://doi.org/10.1093/sysbio/syr044openalex-snapshot
Echinoderm Phylogeny Including Xyloplax, a Progenetic Asteroid
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlx006openalex-snapshot
Divergent morphologies of adhesive predatory mouthparts of Stenus species (Coleoptera: Staphylinidae) explain differences in adhesive performance and resulting prey-capture success
inferred← citeshttps://doi.org/10.1099/ijs.0.009514-0openalex-snapshot
Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of Xanthomonas citri pv. citri and Xanthomonas campestris pv. bilvae
inferred← citeshttps://doi.org/10.1099/ijs.0.024406-0openalex-snapshot
Yersinia entomophaga sp. nov., isolated from the New Zealand grass grub Costelytra zealandica
inferred← citeshttps://doi.org/10.1099/mic.0.028274-0openalex-snapshot
Intercistronic heterogeneity of the 16S–23S rRNA spacer region among Pseudomonas strains isolated from subterranean seeds of hog peanut (Amphicarpa bracteata)
inferred← citeshttps://doi.org/10.1099/mic.0.034058-0openalex-snapshot
Ensifer, Phyllobacterium and Rhizobium species occupy nodules of Medicago sativa (alfalfa) and Melilotus alba (sweet clover) grown at a Canadian site without a history of cultivation
inferred← citeshttps://doi.org/10.1099/vir.0.028126-0openalex-snapshot
Global genetic diversity and geographical and host-species distribution of beak and feather disease virus isolates
inferred← citeshttps://doi.org/10.1099/vir.0.030437-0openalex-snapshot
Comparative complete genome analysis of dengue virus type 3 circulating in India between 2003 and 2008
inferred← citeshttps://doi.org/10.1099/vir.0.2008/003590-0openalex-snapshot
Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen
inferred← citeshttps://doi.org/10.1099/vir.0.83252-0openalex-snapshot
Begomovirus ‘melting pot’ in the south-west Indian Ocean islands: molecular diversity and evolution through recombination
inferred← citeshttps://doi.org/10.1101/2020.08.17.254151openalex-snapshot
Consequences of the divergence of Methionine AdenosylTransferase
inferred← citeshttps://doi.org/10.1101/gr.190314.115openalex-snapshot
Comparison against 186 canid whole-genome sequences reveals survival strategies of an ancient clonally transmissible canine tumor
inferred← citeshttps://doi.org/10.1109/icbbe.2009.5162979openalex-snapshot
Interspecific Relationships and Origins of Taxus and Cephalotaxus
inferred← citeshttps://doi.org/10.1109/tcbb.2014.2351823openalex-snapshot
ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes
inferred← citeshttps://doi.org/10.1111/fwb.12204openalex-snapshot
Higher β‐ and γ‐diversity at species and genetic levels in headwaters than in mid‐order streams in H ydropsyche ( T richoptera)
inferred← citeshttps://doi.org/10.1111/imb.12558openalex-snapshot
Functional characterization of the horizontally transferred 4,5‐DOPA extradiol dioxygenase gene in the domestic silkworm, Bombyx mori
inferred← citeshttps://doi.org/10.1111/j.1096-3642.2010.00662.xopenalex-snapshot
An extraordinary new genus of spiders from Western Australia with an expanded hypothesis on the phylogeny of Tetragnathidae (Araneae)
inferred← citeshttps://doi.org/10.1111/j.1365-2052.2008.01810.xopenalex-snapshot
The mitochondrial genome sequence and molecular phylogeny of the turkey, Meleagris gallopavo
inferred← citeshttps://doi.org/10.1111/j.1365-2052.2011.02248.xopenalex-snapshot
Genetic structure of Eurasian and North American mallard ducks based on mtDNA data
inferred← citeshttps://doi.org/10.1111/j.1365-2311.2010.01238.xopenalex-snapshot
Phylogenetic analysis of the latitude‐niche breadth hypothesis in the butterfly subfamily Nymphalinae
inferred← citeshttps://doi.org/10.1111/j.1365-2699.2008.02006.xopenalex-snapshot
Genetic population structure and distribution of a fungal polypore,Datronia caperata(Polyporaceae), in mangrove forests of Central America
inferred← citeshttps://doi.org/10.1111/j.1365-2699.2009.02201.xopenalex-snapshot
Isolation and introgression in the Intermountain West: contrasting gene genealogies reveal the complex biogeographic history of the American pika (Ochotona princeps)
inferred← citeshttps://doi.org/10.1111/j.1365-2699.2010.02368.xopenalex-snapshot
Phylogeographic patterns of genetic diversity in eastern Mediterranean water frogs were determined by geological processes and climate change in the Late Cenozoic
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2008.04009.xopenalex-snapshot
Spread of an introduced vector‐borne banana virus in Hawaii
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2009.04161.xopenalex-snapshot
Molecular genetic variation and population structure in morphologically differentiated cave and surface populations of the freshwater amphipod Gammarus minus
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2009.04506.xopenalex-snapshot
Genetic divergence and assortative mating between colour morphs of the sea urchinParacentrotus gaimardi
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2010.04684.xopenalex-snapshot
Genomic signals of diversification along ecological gradients in a tropical lizard
inferred← citeshttps://doi.org/10.1111/j.1365-294x.2011.05087.xopenalex-snapshot
Symbiont diversity and non-random hybridization among indigenous (Ms) and invasive (B) biotypes of Bemisia tabaci
inferred← citeshttps://doi.org/10.1111/j.1365-3059.2010.02379.xopenalex-snapshot
Evidence of host‐range expansion from new powdery mildew ( Blumeria graminis ) infections of triticale (× Triticosecale ) in France
inferred← citeshttps://doi.org/10.1111/j.1365-3113.2007.00393.xopenalex-snapshot
Biogeographical and evolutionary patterns in the Macaronesian shield‐backed katydid genus Calliphona Krauss, 1892 (Orthoptera: Tettigoniidae) and allies as inferred from phylogenetic analyses of multiple mitochondrial genes
inferred← citeshttps://doi.org/10.1111/j.1365-3113.2011.00580.xopenalex-snapshot
Molecular phylogenetics of Braconidae (Hymenoptera: Ichneumonoidea), based on multiple nuclear genes, and implications for classification
inferred← citeshttps://doi.org/10.1111/j.1462-2920.2011.02475.xopenalex-snapshot
Biological nitrogen fixation in acidic high‐temperature geothermal springs in Yellowstone National Park, Wyoming
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2007.00280.xopenalex-snapshot
Molecular insights into the phylogenetic structure of the spider genus Theridion (Araneae, Theridiidae) and the origin of the Hawaiian Theridion‐like fauna
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2010.00436.xopenalex-snapshot
Nuclear and mitochondrial phylogenies provide evidence for four species of Eurasian badgers (Carnivora)
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2010.00437.xopenalex-snapshot
Molecular analysis and comparative morphology to resolve a complex of cryptic Xiphinema species
inferred← citeshttps://doi.org/10.1111/j.1463-6409.2010.00443.xopenalex-snapshot
Molecular phylogeny of the fishes traditionally referred to Cyprinini sensu stricto (Teleostei: Cypriniformes)
inferred← citeshttps://doi.org/10.1111/j.1472-4669.2011.00296.xopenalex-snapshot
Environmental constraints defining the distribution, composition, and evolution of chlorophototrophs in thermal features of Yellowstone National Park
inferred← citeshttps://doi.org/10.1111/j.1537-2995.2012.03729.xopenalex-snapshot
Detection of dengue virus in sera of Brazilian blood donors
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2007.00186.xopenalex-snapshot
TOWARD A BETTER UNDERSTANDING OF THE "TRANSVERSE RANGE BREAK": LINEAGE DIVERSIFICATION IN SOUTHERN CALIFORNIA
inferred← citeshttps://doi.org/10.1111/j.1558-5646.2012.01645.xopenalex-snapshot
A NEW BAYESIAN METHOD FOR FITTING EVOLUTIONARY MODELS TO COMPARATIVE DATA WITH INTRASPECIFIC VARIATION
inferred← citeshttps://doi.org/10.1111/j.1574-6968.2008.01201.xopenalex-snapshot
Bacterial diversity ofTaxusrhizosphere: culture-independent and culture-dependent approaches
inferred← citeshttps://doi.org/10.1111/j.1755-0998.2011.02984.xopenalex-snapshot
Evaluation of candidate DNA barcoding loci for economically important timber species of the mahogany family (Meliaceae)
inferred← citeshttps://doi.org/10.1111/j.1758-2229.2010.00162.xopenalex-snapshot
Methanogenesis in subglacial sediments
inferred← citeshttps://doi.org/10.1111/jbi.12217openalex-snapshot
Phylogeography and trans‐Pacific divergence of the rocky shore gastropod Nucella lima
inferred← citeshttps://doi.org/10.1111/jeu.12742openalex-snapshot
Kinetid Structure of Aphelidium and Paraphelidium (Aphelida) Suggests the Features of the Common Ancestor of Fungi and Opisthosporidia
inferred← citeshttps://doi.org/10.1111/jpy.12810openalex-snapshot
Description of a new diatom genus Dorofeyukea gen. nov. with remarks on phylogeny of the family Stauroneidaceae
inferred← citeshttps://doi.org/10.1111/jpy.12903openalex-snapshot
Fatty Acid Content and Profile of the Novel Strain of Coccomyxa elongata (Trebouxiophyceae, Chlorophyta) Cultivated at Reduced Nitrogen and Phosphorus Concentrations
inferred← citeshttps://doi.org/10.1111/mec.13250openalex-snapshot
Molecular evolution patterns reveal life history features of mycoplasma‐related endobacteria associated with arbuscular mycorrhizal fungi
inferred← citeshttps://doi.org/10.1111/mec.13431openalex-snapshot
The evolution of bat nucleic acid‐sensing Toll‐like receptors
inferred← citeshttps://doi.org/10.1111/nph.12678openalex-snapshot
Molecular phylogeny and symbiotic selectivity of the green algal genus Dictyochloropsis s.l. (Trebouxiophyceae): a polyphyletic and widespread group forming photobiont‐mediated guilds in the lichen family Lobariaceae
inferred← citeshttps://doi.org/10.1111/zoj.12203openalex-snapshot
Taxonomic status and phylogenetic relationships ofMarmosa agilis peruana Tate, 1931 (Didelphimorphia: Didelphidae), with comments on the morphological variation ofGracilinanusfrom central-western Brazil
inferred← citeshttps://doi.org/10.1111/zsc.12013openalex-snapshot
Cryptic diversity in B revipalpus mites ( T enuipalpidae)
inferred← citeshttps://doi.org/10.1128/aem.00002-12openalex-snapshot
Novel High-Rank Phylogenetic Lineages within a Sulfur Spring (Zodletone Spring, Oklahoma), Revealed Using a Combined Pyrosequencing-Sanger Approach
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