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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/0471223921.ch4openalex-snapshot

Submitting DNA Sequences to the Databases

inferredcites →https://doi.org/10.1038/35055500openalex-snapshot

Functional annotation of a full-length mouse cDNA collection

inferredcites →https://doi.org/10.1093/nar/25.17.3389openalex-snapshot

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

inferredcites →https://doi.org/10.1093/nar/26.17.3986openalex-snapshot

Protein sequence similarity searches using patterns as seeds

inferredcites →https://doi.org/10.1093/nar/gkn201openalex-snapshot

NCBI BLAST: a better web interface

inferredcites →https://doi.org/10.1093/nar/gkr1163openalex-snapshot

BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata

inferredcites →https://doi.org/10.1093/nar/gkr1178openalex-snapshot

The NCBI Taxonomy database

inferredcites →https://doi.org/10.1093/nar/gkr854openalex-snapshot

The sequence read archive: explosive growth of sequencing data

inferredcites →https://doi.org/10.1093/nar/gks1152openalex-snapshot

DDBJ new system and service refactoring

inferredcites →https://doi.org/10.1093/nar/gks1175openalex-snapshot

Facing growth in the European Nucleotide Archive

inferredcites →https://doi.org/10.1093/nar/gks1189openalex-snapshot

Database resources of the National Center for Biotechnology Information

inferredcites →https://doi.org/10.1093/nar/gks1195openalex-snapshot

GenBank

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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A taxonomic integrative approach of the anuran species from a Cerrado-Amazonian transitional area in western Tocantins state, Brazil

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Systematic revision of species of Atractilina and Spiropes hyperparasitic on Meliolales (Ascomycota) in the tropics

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Melomastia (Dothideomycetes, Ascomycota) species associated with Chinese Aquilaria spp.

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Using VisANT to Analyze Networks

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Bioinformatics

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Databases, Standards and Annotation

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Database Creation and Utility

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Key challenges for the creation and maintenance of specialist protein resources

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An External-Memory Algorithm for String Graph Construction

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Time-dependent selection pressure on two arthropod-borne RNA viruses in the same serogroup

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Ten Years of Maintaining and Expanding a Microbial Genome and Metagenome Analysis System

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Differentiating enteric Escherichia coli from environmental bacteria through the putative glucosyltransferase gene (ycjM)

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A giant squid (Architeuthis dux) off Reunion Island, western Indian Ocean: the greatest giant ever?

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AAV ancestral reconstruction library enables selection of broadly infectious viral variants

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The symbiotic life of Symbiodinium in the open ocean within a new species of calcifying ciliate ( Tiarina sp.)

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A highly abundant bacteriophage discovered in the unknown sequences of human faecal metagenomes

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Genetic architecture of left ventricular noncompaction in adults

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Reconstruction of the ancestral metazoan genome reveals an increase in genomic novelty

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Mapping the drivers of within-host pathogen evolution using massive data sets

inferred← citeshttps://doi.org/10.1038/s41467-020-14941-6openalex-snapshot

A genome-wide approach for identification and characterisation of metabolite-inducible systems

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Unique adaptations in sulfatases underpin colonic mucin degradation by Akkermansia muciniphila

inferred← citeshttps://doi.org/10.1038/s41598-017-01130-7openalex-snapshot

Optimization of amino acid replacement costs by mutational pressure in bacterial genomes

inferred← citeshttps://doi.org/10.1038/s41598-017-09581-8openalex-snapshot

Fungal Hybrid B heme peroxidases – unique fusions of a heme peroxidase domain with a carbohydrate-binding domain

inferred← citeshttps://doi.org/10.1038/s41598-018-21534-3openalex-snapshot

The genes of the sulphoquinovose catabolism in Escherichia coli are also associated with a previously unknown pathway of lactose degradation

inferred← citeshttps://doi.org/10.1038/s41598-019-39406-9openalex-snapshot

Emergence of the East-Central-South-African genotype of Chikungunya virus in Brazil and the city of Rio de Janeiro may have occurred years before surveillance detection

inferred← citeshttps://doi.org/10.1038/s41598-022-10547-8openalex-snapshot

Mitogenome-wise codon usage pattern from comparative analysis of the first mitogenome of Blepharipa sp. (Muga uzifly) with other Oestroid flies

inferred← citeshttps://doi.org/10.1038/s42003-021-01760-8openalex-snapshot

Passive eDNA collection enhances aquatic biodiversity analysis

inferred← citeshttps://doi.org/10.1038/s42254-024-00748-7openalex-snapshot

Single-molecule FRET for probing nanoscale biomolecular dynamics

inferred← citeshttps://doi.org/10.1038/srep05850openalex-snapshot

Protein engineering of selected residues from conserved sequence regions of a novel Anoxybacillus α-amylase

inferred← citeshttps://doi.org/10.1039/c5np00099hopenalex-snapshot

Recent advances in engineering nonribosomal peptide assembly lines

inferred← citeshttps://doi.org/10.1073/pnas.1421392112openalex-snapshot

An ancestral bacterial division system is widespread in eukaryotic mitochondria

inferred← citeshttps://doi.org/10.1073/pnas.1907619116openalex-snapshot

Large-scale identification of pathogen essential genes during coinfection with sympatric and allopatric microbes

inferred← citeshttps://doi.org/10.1080/00949655.2017.1344666openalex-snapshot

Bayesian hidden Markov models in DNA sequence segmentation using R: the case of Simian Vacuolating virus (SV40)

inferred← citeshttps://doi.org/10.1080/14772000.2020.1729892openalex-snapshot

Deep genetic divergence and paraphyly in cryptic species of Mugil fishes (Actinopterygii: Mugilidae)

inferred← citeshttps://doi.org/10.1080/15592324.2025.2532008openalex-snapshot

Analysis of plant gene family heat shock protein 100 (HSP100) and its orthologs in Eukarya reveals sites of divergent evolution and insights into endosymbiotic origins of chloroplasts

inferred← citeshttps://doi.org/10.1086/693856openalex-snapshot

Habitat Association Predicts Genetic Diversity and Population Divergence in Amazonian Birds

inferred← citeshttps://doi.org/10.1088/1478-3975/ac5dcaopenalex-snapshot

Prediction and comparative analysis of CTCF binding sites based on a first principle approach

inferred← citeshttps://doi.org/10.1089/mdr.2015.0197openalex-snapshot

High Diversity of CTX-M Extended-Spectrum β-Lactamases in Municipal Wastewater and Urban Wetlands

inferred← citeshttps://doi.org/10.1091/mbc.e13-10-0602openalex-snapshot

What's that gene (or protein)? Online resources for exploring functions of genes, transcripts, and proteins

inferred← citeshttps://doi.org/10.1093/aob/mcw213openalex-snapshot

A few sequence polymorphisms among isolates of Maize bushy stunt phytoplasma associate with organ proliferation symptoms of infected maize plants

inferred← citeshttps://doi.org/10.1093/bioinformatics/bty937openalex-snapshot

Identifying antimicrobial peptides using word embedding with deep recurrent neural networks

inferred← citeshttps://doi.org/10.1093/database/baad086openalex-snapshot

iCAZyGFADB: an insect CAZyme and gene function annotation database

inferred← citeshttps://doi.org/10.1093/database/bav101openalex-snapshot

JRC GMO-Amplicons: a collection of nucleic acid sequences related to genetically modified organisms

inferred← citeshttps://doi.org/10.1093/database/baw093openalex-snapshot

The Ensembl gene annotation system

inferred← citeshttps://doi.org/10.1093/database/bax006openalex-snapshot

Biocuration in the structure–function linkage database: the anatomy of a superfamily

inferred← citeshttps://doi.org/10.1093/ee/nvw031openalex-snapshot

The Complete Mitochondrial Genome and Song Evolution of the Monotypic GenusU.Tarbinsky, 1932 (Orthoptera: Tettigoniidae)

inferred← citeshttps://doi.org/10.1093/femsec/fiab148openalex-snapshot

Small-scale agricultural grassland management can affect soil fungal community structure as much as continental scale geographic patterns

inferred← citeshttps://doi.org/10.1093/gbe/evaa047openalex-snapshot

Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes

inferred← citeshttps://doi.org/10.1093/gbe/evv244openalex-snapshot

Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation

inferred← citeshttps://doi.org/10.1093/genetics/iyag257openalex-snapshot

The modular origin and evolutionary expansion of the enigmatic DGF-1 protein family in trypanosomatids

inferred← citeshttps://doi.org/10.1093/infdis/jiw192openalex-snapshot

More Easily Cultivated Than Identified: Classical Isolation With Molecular Identification of Vaginal Bacteria

inferred← citeshttps://doi.org/10.1093/ismejo/wrae023openalex-snapshot

Commensal protistTritrichomonas musculusexhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota

inferred← citeshttps://doi.org/10.1093/jme/tjw102openalex-snapshot

Composition and Genetic Diversity of Mosquitoes (Diptera: Culicidae) on Islands and Mainland Shores of Kenya’s Lakes Victoria and Baringo

inferred← citeshttps://doi.org/10.1093/mmy/myv008openalex-snapshot

International Society of Human and Animal Mycology (ISHAM)-ITS reference DNA barcoding database—the quality controlled standard tool for routine identification of human and animal pathogenic fungi

inferred← citeshttps://doi.org/10.1093/molbev/msw046openalex-snapshot

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

inferred← citeshttps://doi.org/10.1093/molbev/msw061openalex-snapshot

Are There Rab GTPases in Archaea?

inferred← citeshttps://doi.org/10.1093/nar/gkac975openalex-snapshot

REBASE: a database for DNA restriction and modification: enzymes, genes and genomes

inferred← citeshttps://doi.org/10.1093/nar/gkt1146openalex-snapshot

Database resources of the National Center for Biotechnology Information

inferred← citeshttps://doi.org/10.1093/nar/gku1046openalex-snapshot

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

inferred← citeshttps://doi.org/10.1093/nar/gku1071openalex-snapshot

Genenames.org: the HGNC resources in 2015

inferred← citeshttps://doi.org/10.1093/nar/gku1099openalex-snapshot

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

inferred← citeshttps://doi.org/10.1093/nar/gku1111openalex-snapshot

The Eukaryotic Promoter Database: expansion of EPDnew and new promoter analysis tools

inferred← citeshttps://doi.org/10.1093/nar/gku1152openalex-snapshot

MBGD update 2015: microbial genome database for flexible ortholog analysis utilizing a diverse set of genomic data

inferred← citeshttps://doi.org/10.1093/nar/gku1177openalex-snapshot

The UCSC Genome Browser database: 2015 update

inferred← citeshttps://doi.org/10.1093/nar/gku1199openalex-snapshot

ChiTaRS 2.1—an improved database of the chimeric transcripts and RNA-seq data with novel sense–antisense chimeric RNA transcripts

inferred← citeshttps://doi.org/10.1093/nar/gku1207openalex-snapshot

NCBI Viral Genomes Resource

inferred← citeshttps://doi.org/10.1093/nar/gku1216openalex-snapshot

GenBank

inferred← citeshttps://doi.org/10.1093/nar/gku1223openalex-snapshot

Expanded microbial genome coverage and improved protein family annotation in the COG database

inferred← citeshttps://doi.org/10.1093/nar/gku403openalex-snapshot

TogoTable: cross-database annotation system using the Resource Description Framework (RDF) data model

inferred← citeshttps://doi.org/10.1093/nar/gku938openalex-snapshot

The immune epitope database (IEDB) 3.0

inferred← citeshttps://doi.org/10.1093/nar/gkv311openalex-snapshot

A serine–arginine-rich (SR) splicing factor modulates alternative splicing of over a thousand genes in Toxoplasma gondii

inferred← citeshttps://doi.org/10.1093/nar/gkw1127openalex-snapshot

ChiTaRS-3.1—the enhanced chimeric transcripts and RNA-seq database matched with protein–protein interactions

inferred← citeshttps://doi.org/10.1093/nar/gky1096openalex-snapshot

Lnc2Cancer v2.0: updated database of experimentally supported long non-coding RNAs in human cancers

inferred← citeshttps://doi.org/10.1093/ve/veaa097openalex-snapshot

Exploring utility of genomic epidemiology to trace origins of highly pathogenic influenza A/H7N9 in Guangdong

inferred← citeshttps://doi.org/10.1094/mpmi-12-21-0301-ropenalex-snapshot

A Phakopsora pachyrhizi Effector Suppresses PAMP-Triggered Immunity and Interacts with a Soybean Glucan Endo-1,3-β-Glucosidase to Promote Virulence

inferred← citeshttps://doi.org/10.1097/gco.0000000000000333openalex-snapshot

Updates on the role of receptor activator of nuclear factor κB/receptor activator of nuclear factor κB ligand/osteoprotegerin pathway in breast cancer risk and treatment

inferred← citeshttps://doi.org/10.1097/wnp.0000000000000159openalex-snapshot

Collaborating and Sharing Data in Epilepsy Research

inferred← citeshttps://doi.org/10.1098/rsos.150173openalex-snapshot

Modelling the species jump: towards assessing the risk of human infection from novel avian influenzas

inferred← citeshttps://doi.org/10.1099/ijsem.0.006048openalex-snapshot

Silvimonas soli sp. nov., a new member of Chromobacteriaceae isolated from soil in Norrbyskär island, Sweden

inferred← citeshttps://doi.org/10.1099/mgen.0.000136openalex-snapshot

Novel large-scale chromosomal transfer in Bacteroides fragilis contributes to its pan-genome and rapid environmental adaptation

inferred← citeshttps://doi.org/10.1099/mic.0.000390openalex-snapshot

Domain evolution in enzymes of the neopullulanase subfamily

inferred← citeshttps://doi.org/10.1101/042440openalex-snapshot

Have coral snake mimics diversified more than non-mimics?

inferred← citeshttps://doi.org/10.1101/2023.03.06.528774openalex-snapshot

The commensal protist Tritrichomonas musculus exhibits a dynamic life cycle that induces extensive remodeling of the gut microbiota

inferred← citeshttps://doi.org/10.1101/2023.09.13.556757openalex-snapshot

Evolutionary prediction for new echolocators

inferred← citeshttps://doi.org/10.1101/2025.09.11.675649openalex-snapshot

The role of Akkermansia muciniphila sulfatases in colonic mucin utilisation

inferred← citeshttps://doi.org/10.1101/gr.199760.115openalex-snapshot

Improved definition of the mouse transcriptome via targeted RNA sequencing

inferred← citeshttps://doi.org/10.1109/bibm.2015.7359887openalex-snapshot

Conservation in mitochondrial DNA: Parallelized estimation and alignment influence

inferred← citeshttps://doi.org/10.1109/ipdps.2017.120openalex-snapshot

Eliminating Irregularities of Protein Sequence Search on Multicore Architectures

inferred← citeshttps://doi.org/10.1109/tcbb.2015.2489662openalex-snapshot

cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU

inferred← citeshttps://doi.org/10.1109/urtc68753.2025.11532989openalex-snapshot

STOIC-CNN: Strain-Trained Oncovirus-Induced Cancer Prediction Using Convolutional Neural Networks

inferred← citeshttps://doi.org/10.1111/1462-2920.14282openalex-snapshot

A nuclease‐toxin and immunity system for kin discrimination in Myxococcus xanthus

inferred← citeshttps://doi.org/10.1111/1755-0998.12399openalex-snapshot

metaxa 2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data

inferred← citeshttps://doi.org/10.1111/1755-0998.13337openalex-snapshot

Validated removal of nuclear pseudogenes and sequencing artefacts from mitochondrial metabarcode data

inferred← citeshttps://doi.org/10.1111/age.12358openalex-snapshot

A testis‐specific gene within a widely expressed gene: Contrasting evolutionary patterns of two differentially expressed mammalian proteins encoded by a single gene, CAMK 4

inferred← citeshttps://doi.org/10.1111/ddi.13699openalex-snapshot

A 3‐year plankton DNA metabarcoding survey reveals marine biodiversity patterns in Australian coastal waters

inferred← citeshttps://doi.org/10.1111/eea.70118openalex-snapshot

Natural Parasitism of Nezara viridula (Linnaeus) (Hemiptera: Pentatomidae) by Trichopoda pictipennis Bigot (Diptera: Tachinidae) in an Organic Strawberry Field in Germany

inferred← citeshttps://doi.org/10.1111/febs.13298openalex-snapshot

Crystal structure of β‐galactosidase from Bacillus circulans ATCC 31382 (BgaD) and the construction of the thermophilic mutants

inferred← citeshttps://doi.org/10.1111/febs.13338openalex-snapshot

Molecular mechanism of PdxR – a transcriptional activator involved in the regulation of vitamin B6 biosynthesis in the probiotic bacterium Bacillus clausii

inferred← citeshttps://doi.org/10.1111/febs.13350openalex-snapshot

Uncovering major genomic features of essential genes in Bacteria and a methanogenic Archaea

inferred← citeshttps://doi.org/10.1111/febs.13994openalex-snapshot

Salmonella typhimurium PtsJ is a novel MocR‐like transcriptional repressor involved in regulating the vitamin B6 salvage pathway

showing the first 200 of 382

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