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Data quality aware analysis of differential expression in RNA-seq with NOISeq R/Bioc package

https://doi.org/10.1093/nar/gkv711
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Phenotypic, genomic, transcriptomic and proteomic changes in Bacillus cereus after a short-term space flight
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Characterization of the defense transcriptome responsive to Fusarium oxysporum-infection in Arabidopsis using RNA-seq
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Transcriptome analysis of normal and mantled developing oil palm flower and fruit
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RNA-seq analysis of prostate cancer in the Chinese population identifies recurrent gene fusions, cancer-associated long noncoding RNAs and aberrant alternative splicings
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An integrated encyclopedia of DNA elements in the human genome
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A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control Consortium
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Detecting and correcting systematic variation in large-scale RNA sequencing data
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Mapping and quantifying mammalian transcriptomes by RNA-Seq
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Count-based differential expression analysis of RNA sequencing data using R and Bioconductor
inferredcites →https://doi.org/10.1038/nrg2484openalex-snapshot
RNA-Seq: a revolutionary tool for transcriptomics
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Anatomical and transcriptional dynamics of maize embryonic leaves during seed germination
inferredcites →https://doi.org/10.1093/bib/bbs046openalex-snapshot
A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis
inferredcites →https://doi.org/10.1093/bioinformatics/btp120openalex-snapshot
TopHat: discovering splice junctions with RNA-Seq
inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot
edgeR : a Bioconductor package for differential expression analysis of digital gene expression data
inferredcites →https://doi.org/10.1093/bioinformatics/btr247openalex-snapshot
Characterization and improvement of RNA-Seq precision in quantitative transcript expression profiling
inferredcites →https://doi.org/10.1093/bioinformatics/bts196openalex-snapshot
RNA-SeQC: RNA-seq metrics for quality control and process optimization
inferredcites →https://doi.org/10.1093/bioinformatics/bts356openalex-snapshot
RSeQC: quality control of RNA-seq experiments
inferredcites →https://doi.org/10.1093/bioinformatics/bts503openalex-snapshot
Qualimap: evaluating next-generation sequencing alignment data
inferredcites →https://doi.org/10.1093/bioinformatics/btt015openalex-snapshot
Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression
inferredcites →https://doi.org/10.1093/bioinformatics/btt688openalex-snapshot
RNA-seq differential expression studies: more sequence or more replication?
inferredcites →https://doi.org/10.1093/bioinformatics/btu308openalex-snapshot
RNASeqGUI: a GUI for analysing RNA-Seq data
inferredcites →https://doi.org/10.1093/bioinformatics/btu638openalex-snapshot
HTSeq—a Python framework to work with high-throughput sequencing data
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ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments
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Analysis of Stress-Responsive Transcriptome in the Intestine of Asian Seabass (Lates calcarifer) using RNA-Seq
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RNA-Seq Analysis of Allele-Specific Expression, Hybrid Effects, and Regulatory Divergence in Hybrids Compared with Their Parents from Natural Populations
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COMPATIBILITY REACTIONS ON SOLID MEDIUM AND INTERSTRAIN INHIBITION IN USTILAGO MAYDIS
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Ensembl 2012
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A comprehensive comparison of RNA-Seq-based transcriptome analysis from reads to differential gene expression and cross-comparison with microarrays: a case study in Saccharomyces cerevisiae
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DEXUS: identifying differential expression in RNA-Seq studies with unknown conditions
inferredcites →https://doi.org/10.1101/gr.079558.108openalex-snapshot
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
inferredcites →https://doi.org/10.1101/gr.124321.111openalex-snapshot
Differential expression in RNA-seq: A matter of depth
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GENCODE: The reference human genome annotation for The ENCODE Project
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HapX-Mediated Iron Homeostasis Is Essential for Rhizosphere Competence and Virulence of the Soilborne Pathogen Fusarium oxysporum
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Statistical design and analysis
inferredcites →https://doi.org/10.1177/0962280211428386openalex-snapshot
Finding consistent patterns: A nonparametric approach for identifying differential expression in RNA-Seq data
inferredcites →https://doi.org/10.1186/1471-2105-11-94openalex-snapshot
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
inferredcites →https://doi.org/10.1186/1471-2105-12-290openalex-snapshot
Bias detection and correction in RNA-Sequencing data
inferredcites →https://doi.org/10.1186/1471-2105-12-480openalex-snapshot
GC-Content Normalization for RNA-Seq Data
inferredcites →https://doi.org/10.1186/1471-2105-13-s13-s5openalex-snapshot
Accuracy of RNA-Seq and its dependence on sequencing depth
inferredcites →https://doi.org/10.1186/1471-2105-14-262openalex-snapshot
NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/1471-2105-14-91openalex-snapshot
A comparison of methods for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/1471-2164-11-385openalex-snapshot
Designing deep sequencing experiments: detecting structural variation and estimating transcript abundance
inferredcites →https://doi.org/10.1186/1471-2164-13-484openalex-snapshot
Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing
inferredcites →https://doi.org/10.1186/1471-2164-14-234openalex-snapshot
Integrated “omics” profiling indicates that miRNAs are modulators of the ontogenetic venom composition shift in the Central American rattlesnake, Crotalus simus simus
inferredcites →https://doi.org/10.1186/1471-2164-15-s10-s7openalex-snapshot
LFCseq: a nonparametric approach for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/1741-7007-9-34openalex-snapshot
Microarrays, deep sequencing and the true measure of the transcriptome
inferredcites →https://doi.org/10.1186/1745-6150-4-14openalex-snapshot
Transcript length bias in RNA-seq data confounds systems biology
inferredcites →https://doi.org/10.1186/2193-1801-1-1openalex-snapshot
Computer-assisted coloring and illuminating based on a region-tree structure
inferredcites →https://doi.org/10.1186/2193-1801-1-44openalex-snapshot
Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis
inferredcites →https://doi.org/10.1186/gb-2004-5-10-r80openalex-snapshot
Bioconductor: open software development for computational biology and bioinformatics
inferredcites →https://doi.org/10.1186/gb-2010-11-2-r14openalex-snapshot
Gene ontology analysis for RNA-seq: accounting for selection bias
inferredcites →https://doi.org/10.1186/gb-2010-11-3-r25openalex-snapshot
A scaling normalization method for differential expression analysis of RNA-seq data
inferredcites →https://doi.org/10.1186/gb-2013-14-2-r20openalex-snapshot
Transcriptome analyses of primitively eusocial wasps reveal novel insights into the evolution of sociality and the origin of alternative phenotypes
inferredcites →https://doi.org/10.1186/gb-2013-14-4-r36openalex-snapshot
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
inferredcites →https://doi.org/10.1186/gb-2013-14-9-r95openalex-snapshot
Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data
inferredcites →https://doi.org/10.1186/s13059-014-0550-8openalex-snapshot
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
inferredcites →https://doi.org/10.1198/016214501753382129openalex-snapshot
Empirical Bayes Analysis of a Microarray Experiment
inferredcites →https://doi.org/10.1371/journal.pcbi.1000849openalex-snapshot
Computational Analysis of Whole-Genome Differential Allelic Expression Data in Human
inferredcites →https://doi.org/10.1371/journal.pone.0066521openalex-snapshot
Dissecting the Characteristics and Dynamics of Human Protein Complexes at Transcriptome Cascade Using RNA-Seq Data
inferredcites →https://doi.org/10.1534/genetics.110.114983openalex-snapshot
Statistical Design and Analysis of RNA Sequencing Data

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inferred← citeshttps://doi.org/10.1016/j.aquaculture.2022.738456openalex-snapshot
Full production cycle performance of gene-edited, sterile Atlantic salmon - growth, smoltification, welfare indicators and fillet composition
inferred← citeshttps://doi.org/10.1016/j.aquaculture.2023.739992openalex-snapshot
Molecular characterization of four genes encoding abalone insulin-related peptides and their roles in regulation of hemolymph glucose in the Pacific abalone Haliotis discus hannai
inferred← citeshttps://doi.org/10.1016/j.aspen.2020.01.013openalex-snapshot
Transcriptome characterization and gene expression analysis related to immune response in Gynaephora qinghaiensis pupae
inferred← citeshttps://doi.org/10.1016/j.aspen.2021.04.005openalex-snapshot
Comparative analysis of testis transcriptomes in laboratory cohorts of recently diverged allopatric Drosophila nasuta nasuta and Drosophila nasuta albomicans
inferred← citeshttps://doi.org/10.1016/j.bbagrm.2021.194702openalex-snapshot
Network-driven discovery yields new insight into Shox2-dependent cardiac rhythm control
inferred← citeshttps://doi.org/10.1016/j.bbapap.2019.140321openalex-snapshot
Unbiased libraries in protein directed evolution
inferred← citeshttps://doi.org/10.1016/j.bbrc.2024.150104openalex-snapshot
Significant improvement of cardiac outflow tract septation defects in a DiGeorge syndrome model after minoxidil treatment
inferred← citeshttps://doi.org/10.1016/j.bbrep.2023.101420openalex-snapshot
Repressive epigenetic mechanisms, such as the H3K27me3 histone modification, were predicted to affect muscle gene expression and its mineral content in Nelore cattle
inferred← citeshttps://doi.org/10.1016/j.biomaterials.2018.09.023openalex-snapshot
Tumor microenvironment-targeted poly-L-glutamic acid-based combination conjugate for enhanced triple negative breast cancer treatment
inferred← citeshttps://doi.org/10.1016/j.canlet.2023.216363openalex-snapshot
Photodynamic augmentation of oncolytic virus therapy for central nervous system malignancies
inferred← citeshttps://doi.org/10.1016/j.cbd.2016.09.001openalex-snapshot
Transcriptomic profiles of the upper olfactory rosette in cultured and wild Senegalese sole ( Solea senegalensis ) males
inferred← citeshttps://doi.org/10.1016/j.cbd.2025.101645openalex-snapshot
Investigating the molecular basis of cleptobiosis in eusocial stingless bees (Apidae: Hymenoptera)
inferred← citeshttps://doi.org/10.1016/j.celrep.2020.02.020openalex-snapshot
iTAG-RNA Isolates Cell-Specific Transcriptional Responses to Environmental Stimuli and Identifies an RNA-Based Endocrine Axis
inferred← citeshttps://doi.org/10.1016/j.celrep.2021.109198openalex-snapshot
Uncovering the RNA-binding protein landscape in the pluripotency network of human embryonic stem cells
inferred← citeshttps://doi.org/10.1016/j.celrep.2021.110066openalex-snapshot
Ago1 controls myogenic differentiation by regulating eRNA-mediated CBP-guided epigenome reprogramming
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.110455openalex-snapshot
Bacteriocyte development is sexually differentiated in Bemisia tabaci
inferred← citeshttps://doi.org/10.1016/j.celrep.2023.113416openalex-snapshot
Epigenetic regulator RNF20 underlies temporal hierarchy of gene expression to regulate postnatal cardiomyocyte polarization
inferred← citeshttps://doi.org/10.1016/j.celrep.2025.115270openalex-snapshot
scCamAge: A context-aware prediction engine for cellular age, aging-associated bioactivities, and morphometrics
inferred← citeshttps://doi.org/10.1016/j.chemosphere.2020.129190openalex-snapshot
Marine associated microbial consortium applied to RBBR textile dye detoxification and decolorization: Combined approach and metatranscriptomic analysis
inferred← citeshttps://doi.org/10.1016/j.cmpb.2024.108258openalex-snapshot
DeClUt: Decluttering differentially expressed genes through clustering of their expression profiles
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2021.104603openalex-snapshot
Application of miRNA-seq in neuropsychiatry: A methodological perspective
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2022.106373openalex-snapshot
Differential diagnosis of systemic lupus erythematosus and Sjögren's syndrome using machine learning and multi-omics data
inferred← citeshttps://doi.org/10.1016/j.csbj.2020.05.010openalex-snapshot
NormQ: RNASeq normalization based on RT-qPCR derived size factors
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.09.010openalex-snapshot
Enriched transcriptome analysis of laser capture microdissected populations of single cells to investigate intracellular heterogeneity in immunostained FFPE sections
inferred← citeshttps://doi.org/10.1016/j.csbj.2022.11.051openalex-snapshot
Temporal progress of gene expression analysis with RNA-Seq data: A review on the relationship between computational methods
inferred← citeshttps://doi.org/10.1016/j.csbj.2023.10.019openalex-snapshot
Identifying cancer driver genes in individual tumours
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.02.018openalex-snapshot
Differential gene expression analysis pipelines and bioinformatic tools for the identification of specific biomarkers: A review
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.10.010openalex-snapshot
Toxicogenomic assessment of in vitro macrophages exposed to profibrotic challenge reveals a sustained transcriptomic immune signature
inferred← citeshttps://doi.org/10.1016/j.cub.2022.03.056openalex-snapshot
Synergistic interaction of gut microbiota enhances the growth of nematode through neuroendocrine signaling
inferred← citeshttps://doi.org/10.1016/j.cub.2024.09.061openalex-snapshot
Control of sporophyte secondary cell wall development in Marchantia by a Class II KNOX gene
inferred← citeshttps://doi.org/10.1016/j.dib.2022.108426openalex-snapshot
Transcriptome profiling dataset of different developmental stage flowers of soybean (Glycine max)
inferred← citeshttps://doi.org/10.1016/j.dib.2022.108800openalex-snapshot
Dataset of conditioning effect of herbal extract-based plant biostimulants in pea (Pisum sativum)
inferred← citeshttps://doi.org/10.1016/j.dib.2023.109173openalex-snapshot
Dataset of RNA-Seq transcriptome of the fetal liver at day 83 of gestation associated with periconceptual maternal nutrition in beef heifers
inferred← citeshttps://doi.org/10.1016/j.dib.2025.112139openalex-snapshot
Curated and harmonised transcriptomics datasets of interstitial lung diseases
inferred← citeshttps://doi.org/10.1016/j.dnarep.2016.10.005openalex-snapshot
Quantification and genome-wide mapping of DNA double-strand breaks
inferred← citeshttps://doi.org/10.1016/j.ecoenv.2022.114047openalex-snapshot
Physiological and transcriptomic effects of hexafluoropropylene oxide dimer acid in Caenorhabditis elegans during development
inferred← citeshttps://doi.org/10.1016/j.ejcb.2023.151311openalex-snapshot
OxLDL sensitizes platelets for increased formation of extracellular vesicles capable of finetuning macrophage gene expression
inferred← citeshttps://doi.org/10.1016/j.ejphar.2025.177461openalex-snapshot
TGFβ1 generates a pro-fibrotic proteome in human lung parenchyma that is sensitive to pharmacological intervention
inferred← citeshttps://doi.org/10.1016/j.eng.2021.10.001openalex-snapshot
Developmental Temporal Patterns and Molecular Network Features in the Transcriptome of Rat Spinal Cord
inferred← citeshttps://doi.org/10.1016/j.exer.2020.108114openalex-snapshot
In silico and in vitro analysis of cation-activated potassium channels in human corneal endothelial cells
inferred← citeshttps://doi.org/10.1016/j.fct.2018.12.032openalex-snapshot
Hepatic transcriptional dose-response analysis of male and female Fischer rats exposed to hexabromocyclododecane
inferred← citeshttps://doi.org/10.1016/j.fertnstert.2022.09.013openalex-snapshot
Endometrial gene expression differences in women with coronavirus disease 2019
inferred← citeshttps://doi.org/10.1016/j.freeradbiomed.2024.10.023openalex-snapshot
CONFIDENCE: A Web App for Cross-Platform Differential Gene Expression Analysis, Gene Scoring, and Enrichment Analysis
inferred← citeshttps://doi.org/10.1016/j.fsi.2017.09.033openalex-snapshot
Trancriptome profiles of Amur sturgeon spleen in response to Yersinia ruckeri infection
inferred← citeshttps://doi.org/10.1016/j.gene.2017.09.006openalex-snapshot
Integrative analysis of DNA methylation and mRNA expression during differentiation of umbilical cord blood derived mononuclear cells to endothelial cells
inferred← citeshttps://doi.org/10.1016/j.genrep.2020.100894openalex-snapshot
Genome-wide characterization and expression analysis of fatty acid desaturase gene family in Camelina sativa
inferred← citeshttps://doi.org/10.1016/j.heliyon.2022.e09065openalex-snapshot
ADAMTS14, ARHGAP22, and EPDR1 as potential novel targets in acute myeloid leukaemia
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e13154openalex-snapshot
Impact of electro-activated whey on growth, acid and bile resistance of Lacticaseibacillus rhamnosus GG and Lactobacillus acidophilus ATCC 4356
inferred← citeshttps://doi.org/10.1016/j.humgen.2023.201154openalex-snapshot
Combined transcriptomics and in-silico approach uncovers the role of prognostic biomarkers in hepatocellular carcinoma
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2022.12.221openalex-snapshot
Identification and differential expression of long non-coding RNAs and their association with XIST gene during early embryonic developmental stages of Bos taurus
inferred← citeshttps://doi.org/10.1016/j.indcrop.2024.119510openalex-snapshot
Euphorbiaceae superoxide dismutase, catalase, and glutathione peroxidase as clues to better comprehend high drought tolerance in castor bean
inferred← citeshttps://doi.org/10.1016/j.intimp.2025.115106openalex-snapshot
Epalrestat, an aldose reductase inhibitor, mitigates doxorubicin-induced cardiotoxicity by inhibiting glycometabolism
inferred← citeshttps://doi.org/10.1016/j.isci.2021.102807openalex-snapshot
Identification of response signatures for tankyrase inhibitor treatment in tumor cell lines
inferred← citeshttps://doi.org/10.1016/j.isci.2024.110471openalex-snapshot
Multi-omic profiling of pathogen-stimulated primary immune cells
inferred← citeshttps://doi.org/10.1016/j.jaci.2022.03.020openalex-snapshot
Epithelial cell responses to rhinovirus identify an early-life–onset asthma phenotype in adults
inferred← citeshttps://doi.org/10.1016/j.jbc.2023.104969openalex-snapshot
Rpb7 represses transcription-coupled nucleotide excision repair
inferred← citeshttps://doi.org/10.1016/j.jbiotec.2021.08.005openalex-snapshot
Non-coding Natural Antisense Transcripts: Analysis and Application
inferred← citeshttps://doi.org/10.1016/j.jep.2019.112372openalex-snapshot
The roles of Qishen granules recipes, Qingre Jiedu, Wenyang Yiqi and Huo Xue, in the treatment of heart failure
inferred← citeshttps://doi.org/10.1016/j.jgeb.2023.100337openalex-snapshot
Screening of miRNAs as prognostic biomarkers and their associated hub targets across Hepatocellular carcinoma using survival-based bioinformatics approach
inferred← citeshttps://doi.org/10.1016/j.jgg.2018.06.005openalex-snapshot
LncPipe: A Nextflow-based pipeline for identification and analysis of long non-coding RNAs from RNA-Seq data
inferred← citeshttps://doi.org/10.1016/j.jmccpl.2022.100011openalex-snapshot
Multiomic analyses reveal enriched glycolytic processes in β-myosin heavy chain-expressed cardiomyocytes in early cardiac hypertrophy
inferred← citeshttps://doi.org/10.1016/j.jmccpl.2025.100283openalex-snapshot
Deep plasma and tissue proteome profiling of knockout mice reveals pathways associated with Svep1 deficiency
inferred← citeshttps://doi.org/10.1016/j.jmii.2023.11.007openalex-snapshot
FcγRIIB modulates splenic germinal center response against immune subversion during acute influenza A virus infection
inferred← citeshttps://doi.org/10.1016/j.jmoldx.2025.05.008openalex-snapshot
Development of an End-to-End Total RNA Sequencing Quality Control Framework for Blood-Based Biomarker Discovery
inferred← citeshttps://doi.org/10.1016/j.jtherbio.2025.104064openalex-snapshot
Transcriptional dynamics of porcine granulosa cells during cellular acclimation to thermal challenge
inferred← citeshttps://doi.org/10.1016/j.jtumed.2021.12.013openalex-snapshot
Whole-transcriptome bioinformatics revealed HTRA3, KRT8, KRT17, and RHEX as novel targets in acute myeloid leukaemia
inferred← citeshttps://doi.org/10.1016/j.marpolbul.2025.117570openalex-snapshot
Evaluating the effects of zinc oxide nanoparticles on a sentinel aquatic invertebrate species: Transcriptomic analysis and potential implications for ecosystem health
inferred← citeshttps://doi.org/10.1016/j.mce.2016.08.033openalex-snapshot
Expression profiling identifies Sertoli and Leydig cell genes as Fsh targets in adult zebrafish testis
inferred← citeshttps://doi.org/10.1016/j.micpath.2020.104598openalex-snapshot
Hepatic transcriptome study of Taenia asiatica infection in suckling pigs
inferred← citeshttps://doi.org/10.1016/j.micpath.2022.105705openalex-snapshot
Analysis of spleen of mice (Mus musculus) infected with Aspergillus nidulans identifies immune-related genes
inferred← citeshttps://doi.org/10.1016/j.mocell.2024.100060openalex-snapshot
Brief guide to RNA sequencing analysis for nonexperts in bioinformatics
inferred← citeshttps://doi.org/10.1016/j.mocell.2024.100139openalex-snapshot
A brief guide to analyzing expression quantitative trait loci
inferred← citeshttps://doi.org/10.1016/j.molcel.2014.02.019openalex-snapshot
A Two-Step Process for Epigenetic Inheritance in Arabidopsis
inferred← citeshttps://doi.org/10.1016/j.molcel.2021.09.027openalex-snapshot
Genome-wide RNA structure changes during human neurogenesis modulate gene regulatory networks
inferred← citeshttps://doi.org/10.1016/j.molcel.2024.09.016openalex-snapshot
BRCA1 levels and DNA-damage response are controlled by the competitive binding of circHIPK3 or FMRP to the BRCA1 mRNA
inferred← citeshttps://doi.org/10.1016/j.neuro.2023.05.005openalex-snapshot
Locomotion and brain gene expression exhibit sex-specific non-monotonic dose-response to HFPO-DA during Drosophila melanogaster lifespan
inferred← citeshttps://doi.org/10.1016/j.neuroscience.2019.03.027openalex-snapshot
Exposure to enriched environment rescues anxiety-like behavior and miRNA deregulated expression induced by perinatal malnutrition while altering oligodendrocyte morphology
inferred← citeshttps://doi.org/10.1016/j.omtn.2018.09.024openalex-snapshot
Integrating Transcriptome and Experiments Reveals the Anti-diabetic Mechanism of Cyclocarya paliurus Formula
inferred← citeshttps://doi.org/10.1016/j.omtn.2021.12.032openalex-snapshot
CBX2 and EZH2 cooperatively promote the growth and metastasis of lung adenocarcinoma
inferred← citeshttps://doi.org/10.1016/j.plantsci.2020.110584openalex-snapshot
The phytochrome-interacting transcription factor CsPIF8 contributes to cold tolerance in citrus by regulating superoxide dismutase expression
inferred← citeshttps://doi.org/10.1016/j.plaphy.2018.09.024openalex-snapshot
Transcriptomic view of survival during early seedling growth of the extremophyte Haloxylon ammodendron
inferred← citeshttps://doi.org/10.1016/j.redox.2022.102251openalex-snapshot
Interplay between mitochondrial reactive oxygen species, oxidative stress and hypoxic adaptation in facioscapulohumeral muscular dystrophy: Metabolic stress as potential therapeutic target
inferred← citeshttps://doi.org/10.1016/j.scienta.2020.109476openalex-snapshot
Integrated metabolomic and transcriptomic analyses reveal differences in the biosynthetic pathway of anthocyanins in Fragaria nilgerrensis and Fragaria pentaphylla
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2019.02.440openalex-snapshot
Transcriptomic analysis of Anabas testudineus and its defensive mechanisms in response to persistent organic pollutants exposure
inferred← citeshttps://doi.org/10.1016/j.scitotenv.2020.144515openalex-snapshot
Metaproteomics reveals the molecular mechanism underlying bloom maintenance of a marine dinoflagellate under low ambient CO2 and inorganic nutrients
inferred← citeshttps://doi.org/10.1016/j.stem.2019.02.004openalex-snapshot
Mapping the Global Chromatin Connectivity Network for Sox2 Function in Neural Stem Cell Maintenance
inferred← citeshttps://doi.org/10.1016/j.stemcr.2021.05.016openalex-snapshot
Auxin-degron system identifies immediate mechanisms of OCT4
inferred← citeshttps://doi.org/10.1016/j.stress.2024.100504openalex-snapshot
Transcriptomic reprogramming of rice cultivars in response to herbicide, salt and their combined stresses
inferred← citeshttps://doi.org/10.1016/j.stress.2024.100676openalex-snapshot
The dynamic transcriptome reveals response patterns to black shank disease in tobacco (Nicotiana tabacum L.)
inferred← citeshttps://doi.org/10.1016/j.theriogenology.2022.04.011openalex-snapshot
Oviductal epithelial cells transcriptome and extracellular vesicles characterization during thermoneutral and heat stress conditions in dairy cows
inferred← citeshttps://doi.org/10.1016/j.tig.2023.05.004openalex-snapshot
Current concepts, advances, and challenges in deciphering the human microbiota with metatranscriptomics
inferred← citeshttps://doi.org/10.1016/j.vetmic.2026.111201openalex-snapshot
Bovine viral diarrhea virus 2 infection induces antiviral and remodeling transcriptional programs in the calf thymus
inferred← citeshttps://doi.org/10.1016/j.ygeno.2020.07.025openalex-snapshot
Mammary tissue transcriptomic analysis for construction of integrated regulatory networks involved in lactogenesis of Ovis aries
inferred← citeshttps://doi.org/10.1016/j.ygeno.2022.110274openalex-snapshot
Untangling the placentome gene network of beef heifers in early gestation
inferred← citeshttps://doi.org/10.1016/j.ymeth.2017.05.020openalex-snapshot
Deep sequencing and high-throughput analysis of PIWI-associated small RNAs
inferred← citeshttps://doi.org/10.1017/s0954102021000195openalex-snapshot
Firstde novotranscriptome analysis of the Antarctic springtailCryptopygus terranovus(Collembola:Isotomidae) following mid-term heat exposure
inferred← citeshttps://doi.org/10.1021/acs.jproteome.9b00088openalex-snapshot
Metabolic Profiling of Tumors, Sera, and Skeletal Muscles from an Orthotopic Murine Model of Gastric Cancer Associated-Cachexia
inferred← citeshttps://doi.org/10.1021/acschemneuro.4c00286openalex-snapshot
Rexinoids Induce Differential Gene Expression in Human Glioblastoma Cells and Protein–Protein Interactions in a Yeast Two-Hybrid System
inferred← citeshttps://doi.org/10.1021/acschemneuro.9b00304openalex-snapshot
A Multiomics Study To Unravel the Effects of Developmental Exposure to Endosulfan in Rats: Molecular Explanation for Sex-Dependent Effects
inferred← citeshttps://doi.org/10.1021/acsmeasuresciau.5c00166openalex-snapshot
Harnessing New Tools for Old Challenges: Optimising Neat Plasma Proteomics with Automation and Gas-Phase Fractionation
inferred← citeshttps://doi.org/10.1038/ncomms11412openalex-snapshot
Foldamer-mediated manipulation of a pre-amyloid toxin
inferred← citeshttps://doi.org/10.1038/ncomms15213openalex-snapshot
Transcriptomic and macroevolutionary evidence for phenotypic uncoupling between frog life history phases
inferred← citeshttps://doi.org/10.1038/s12276-023-01030-zopenalex-snapshot
Genomic characteristics of triple negative apocrine carcinoma: a comparison to triple negative breast cancer
inferred← citeshttps://doi.org/10.1038/s41388-019-0925-0openalex-snapshot
Regulatory networks in mechanotransduction reveal key genes in promoting cancer cell stemness and proliferation
inferred← citeshttps://doi.org/10.1038/s41388-019-0969-1openalex-snapshot
LOXL2-mediated H3K4 oxidation reduces chromatin accessibility in triple-negative breast cancer cells
inferred← citeshttps://doi.org/10.1038/s41388-022-02375-xopenalex-snapshot
EZH2 endorses cell plasticity to non-small cell lung cancer cells facilitating mesenchymal to epithelial transition and tumour colonization
inferred← citeshttps://doi.org/10.1038/s41416-022-02028-6openalex-snapshot
CXCR1/2 dual-inhibitor ladarixin reduces tumour burden and promotes immunotherapy response in pancreatic cancer
inferred← citeshttps://doi.org/10.1038/s41416-023-02195-0openalex-snapshot
Selective inhibition of HDAC6 promotes bladder cancer radiosensitization and mitigates the radiation-induced CXCL1 signalling
inferred← citeshttps://doi.org/10.1038/s41419-024-07011-yopenalex-snapshot
EZH2 represses mesenchymal genes and upholds the epithelial state of breast carcinoma cells
inferred← citeshttps://doi.org/10.1038/s41420-021-00761-0openalex-snapshot
LncRNA SFTA1P mediates positive feedback regulation of the Hippo-YAP/TAZ signaling pathway in non-small cell lung cancer
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