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CancerSEA: a cancer single-cell state atlas

https://doi.org/10.1093/nar/gky939
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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1002/gcc.10205openalex-snapshot
Increased expression of the LGALS3 (Galectin 3) gene in human non–small‐cell lung cancer
inferredcites →https://doi.org/10.1007/s11010-017-3112-zopenalex-snapshot
Vimentin is a crucial target for anti-metastasis therapy of nasopharyngeal carcinoma
inferredcites →https://doi.org/10.1007/s12013-014-0196-xopenalex-snapshot
High-Level S100A6 Promotes Metastasis and Predicts the Outcome of T1–T2 Stage in Clear Cell Renal Cell Carcinoma
inferredcites →https://doi.org/10.1007/s13277-015-3052-8openalex-snapshot
CLIC1 a novel biomarker of intraperitoneal metastasis in serous epithelial ovarian cancer
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Hallmarks of Cancer: The Next Generation
inferredcites →https://doi.org/10.1016/j.cels.2015.12.004openalex-snapshot
The Molecular Signatures Database Hallmark Gene Set Collection
inferredcites →https://doi.org/10.1016/j.febslet.2010.12.030openalex-snapshot
Metallothionein-2A overexpression increases the expression of matrix metalloproteinase-9 and invasion of breast cancer cells
inferredcites →https://doi.org/10.1016/j.febslet.2013.08.012openalex-snapshot
Protein interactions between surface annexin A2 and S100A10 mediate adhesion of breast cancer cells to microvascular endothelial cells
inferredcites →https://doi.org/10.1016/j.stem.2014.02.006openalex-snapshot
Evolution of the Cancer Stem Cell Model
inferredcites →https://doi.org/10.1016/s0092-8674(00)81683-9openalex-snapshot
The Hallmarks of Cancer
inferredcites →https://doi.org/10.1038/nature09515openalex-snapshot
Distant metastasis occurs late during the genetic evolution of pancreatic cancer
inferredcites →https://doi.org/10.1038/nature12624openalex-snapshot
Tumour heterogeneity and cancer cell plasticity
inferredcites →https://doi.org/10.1038/nature20123openalex-snapshot
Single-cell RNA-seq supports a developmental hierarchy in human oligodendroglioma
inferredcites →https://doi.org/10.1038/nm.2415openalex-snapshot
Stem cell gene expression programs influence clinical outcome in human leukemia
inferredcites →https://doi.org/10.1038/nm.4336openalex-snapshot
Single-cell transcriptomics uncovers distinct molecular signatures of stem cells in chronic myeloid leukemia
inferredcites →https://doi.org/10.1038/nmeth.1315openalex-snapshot
mRNA-Seq whole-transcriptome analysis of a single cell
inferredcites →https://doi.org/10.1093/nar/gku1092openalex-snapshot
Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes
inferredcites →https://doi.org/10.1093/nar/gkv1351openalex-snapshot
The Reactome pathway Knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkw1092openalex-snapshot
KEGG: new perspectives on genomes, pathways, diseases and drugs
inferredcites →https://doi.org/10.1093/nar/gkw1108openalex-snapshot
Expansion of the Gene Ontology knowledgebase and resources
inferredcites →https://doi.org/10.1093/nar/gkx1008openalex-snapshot
HCMDB: the human cancer metastasis database
inferredcites →https://doi.org/10.1093/nar/gkx1132openalex-snapshot
The Reactome Pathway Knowledgebase
inferredcites →https://doi.org/10.1093/nar/gkx921openalex-snapshot
StemMapper: a curated gene expression database for stem cell lineage analysis
inferredcites →https://doi.org/10.1093/nar/gkx949openalex-snapshot
SCPortalen: human and mouse single-cell centric database
inferredcites →https://doi.org/10.1093/nar/gkx964openalex-snapshot
SEECancer: a resource for somatic events in evolution of cancer genome
inferredcites →https://doi.org/10.1101/gr.133991.111openalex-snapshot
A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers
inferredcites →https://doi.org/10.1126/science.1164382openalex-snapshot
An Integrated Genomic Analysis of Human Glioblastoma Multiforme
inferredcites →https://doi.org/10.1126/science.1254257openalex-snapshot
Single-cell RNA-seq highlights intratumoral heterogeneity in primary glioblastoma
inferredcites →https://doi.org/10.1126/science.aad0501openalex-snapshot
Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
inferredcites →https://doi.org/10.1126/science.aai8478openalex-snapshot
Decoupling genetics, lineages, and microenvironment in IDH-mutant gliomas by single-cell RNA-seq
inferredcites →https://doi.org/10.1158/0008-5472.can-05-4463openalex-snapshot
Tumor Cell–Derived and Macrophage-Derived Cathepsin B Promotes Progression and Lung Metastasis of Mammary Cancer
inferredcites →https://doi.org/10.1158/1078-0432.ccr-17-1776openalex-snapshot
Vimentin Is Required for Lung Adenocarcinoma Metastasis via Heterotypic Tumor Cell–Cancer-Associated Fibroblast Interactions during Collective Invasion
inferredcites →https://doi.org/10.1186/1471-2105-14-7openalex-snapshot
GSVA: gene set variation analysis for microarray and RNA-Seq data
inferredcites →https://doi.org/10.1186/1471-2407-13-410openalex-snapshot
ITGA3 and ITGB4 expression biomarkers estimate the risks of locoregional and hematogenous dissemination of oral squamous cell carcinoma
inferredcites →https://doi.org/10.18632/oncotarget.5199openalex-snapshot
Anxa2 binds to STAT3 and promotes epithelial to mesenchymal transition in breast cancer cells
inferredcites →https://doi.org/10.3390/genes8120368openalex-snapshot
scRNASeqDB: A Database for RNA-Seq Based Gene Expression Profiles in Human Single Cells
inferredcites →https://doi.org/10.4049/jimmunol.1700272openalex-snapshot
JingleBells: A Repository of Immune-Related Single-Cell RNA–Sequencing Datasets
inferredcites →https://doi.org/10.7150/ijbs.13240openalex-snapshot
Sox4 Expression Confers Bladder Cancer Stem Cell Properties and Predicts for Poor Patient Outcome

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Identification of a Hypoxia-Related Gene Signature and Establishment of a Nomogram for Predicting Prognosis in Esophageal Squamous Cell Carcinoma
inferred← citeshttps://doi.org/10.2139/ssrn.3957834openalex-extracted
HSPB8 Induces 5-Fluorouracil Resistance in Colorectal Cancer by Promoting Tumor Autophagy
inferred← citeshttps://doi.org/10.2139/ssrn.4012590openalex-extracted
inferred← citeshttps://doi.org/10.2139/ssrn.4598278openalex-extracted
Pan-Cancer Analysis of LAP2α as a Potential Prognostic and Immunological Biomarker for Multiple Cancer Types Including Glioma
inferred← citeshttps://doi.org/10.1002/1878-0261.70099openalex-snapshot
Single‐cell transcriptomics redefines focal neuroendocrine differentiation as a distinct prostate cancer pathology
inferred← citeshttps://doi.org/10.1002/adtp.201900152openalex-snapshot
Genetic Hallmarks and Heterogeneity of Glioblastoma in the Single‐Cell Omics Era
inferred← citeshttps://doi.org/10.1002/advs.202204113openalex-snapshot
Enabling Single‐Cell Drug Response Annotations from Bulk RNA‐Seq Using SCAD
inferred← citeshttps://doi.org/10.1002/advs.202416687openalex-snapshot
Phosphorylation‐Dependent Stabilization of Collaborator of ARF (CARF) Suppresses Lymphoma Cell Proliferation
inferred← citeshttps://doi.org/10.1002/biof.2141openalex-snapshot
Machine learning models reveal ARHGAP11A 's impact on lymph node metastasis and stemness in NSCLC
inferred← citeshttps://doi.org/10.1002/brb3.3465openalex-snapshot
SP140 inhibitor suppressing TRIM22 expression regulates glioma progress through PI3K/AKT signaling pathway
inferred← citeshttps://doi.org/10.1002/cac2.12471openalex-snapshot
Targeting histone deacetylase suppresses tumor growth through eliciting METTL14‐modified m 6 A RNA methylation in ocular melanoma
inferred← citeshttps://doi.org/10.1002/cai2.32openalex-snapshot
Prognostic value of lactate transporter SLC16A1 and SLC16A3 as oncoimmunological biomarkers associating tumor metabolism and immune evasion in glioma
inferred← citeshttps://doi.org/10.1002/cam4.4163openalex-snapshot
Expression and prognostic potential of PLEK2 in head and neck squamous cell carcinoma based on bioinformatics analysis
inferred← citeshttps://doi.org/10.1002/cam4.5002openalex-snapshot
Establishment of a risk model by integrating hypoxia genes in predicting prognosis of esophageal squamous cell carcinoma
inferred← citeshttps://doi.org/10.1002/cam4.70025openalex-snapshot
Altered tumor microenvironment heterogeneity of penile cancer during progression from non‐lymphatic to lymphatic metastasis
inferred← citeshttps://doi.org/10.1002/cam4.70448openalex-snapshot
LMAN2 Promotes Breast Cancer Tumorigenesis and Drug Resistance by Interacting With MAPK9 via Activation of the MAPK Pathway
inferred← citeshttps://doi.org/10.1002/cam4.70749openalex-snapshot
PRR11 Promotes Bladder Cancer Growth and Metastasis by Facilitating G1 /S Progression and Epithelial‐Mesenchymal Transition
inferred← citeshttps://doi.org/10.1002/cam4.71147openalex-snapshot
Mechanistic Insights Into the Tumor‐Driving and Diagnostic Roles of KCTD Family Genes in Ovarian Cancer: An Integrated In Silico and In Vitro Analysis
inferred← citeshttps://doi.org/10.1002/cam4.72048openalex-snapshot
C1orf226 Promotes Glioma Stemness and Oncogenesis in Glioma via PLK 1‐Mediated Wnt/β‐Catenin Signaling
inferred← citeshttps://doi.org/10.1002/cnr2.1824openalex-snapshot
Six‐transmembrane epithelial antigen of prostate 3 (STEAP3) is a potential prognostic biomarker in clear cell renal cell carcinoma that correlates with M2 macrophage infiltration and epithelial–mesenchymal
inferred← citeshttps://doi.org/10.1002/cnr2.2079openalex-snapshot
SERPINC1 , a new prognostic predictor of colon cancer, promote colon cancer progression through EMT
inferred← citeshttps://doi.org/10.1002/cnr2.70188openalex-snapshot
A Comprehensive Analysis of Epoxide Hydrolase 2 ( EPHX2 ) in Pan‐Cancer
inferred← citeshttps://doi.org/10.1002/cns.70738openalex-snapshot
Tumor Electric Field Therapy Inhibits TGF ‐β/ C 1 R Signaling Axis‐Driven Epithelial‐Mesenchymal Transition in Glioblastoma
inferred← citeshttps://doi.org/10.1002/cphy.c190037openalex-snapshot
Single‐Cell Transcriptomic Analysis
inferred← citeshttps://doi.org/10.1002/ctm2.1273openalex-snapshot
NSUN2‐mediated m5C RNA methylation dictates retinoblastoma progression through promoting PFAS mRNA stability and expression
inferred← citeshttps://doi.org/10.1002/ctm2.70144openalex-snapshot
Multi‐omics analysis of pyroptosis‐related genes for prognosis and immune landscape in head and neck cancer
inferred← citeshttps://doi.org/10.1002/ctm2.70572openalex-snapshot
Pan‐cancer multi‐omics reveals DCAF7 as an immune‐modulating prognostic driver and Wnt/β‐catenin activator in hepatocellular carcinoma
inferred← citeshttps://doi.org/10.1002/ctm2.70744openalex-snapshot
An interpretable multi‐task whole‐slide histopathology AI model for non‐small cell lung cancer: Cross‐cohort generalisation, spatial attention–transcriptomic integration, and molecular–immune profiling
inferred← citeshttps://doi.org/10.1002/ctm2.874openalex-snapshot
Single‐cell transcriptomics provides insights into the origin and microenvironment of human oesophageal high‐grade intraepithelial neoplasia
inferred← citeshttps://doi.org/10.1002/ddr.70053openalex-snapshot
Investigating the Impact of B Cell‐Related Genes on Colorectal Cancer Immunosuppressive Environment and Immunotherapy Evasion
inferred← citeshttps://doi.org/10.1002/gch2.202300163openalex-snapshot
Biomedical Big Data Technologies, Applications, and Challenges for Precision Medicine: A Review
inferred← citeshttps://doi.org/10.1002/hed.26961openalex-snapshot
Functional roles of the SHCBP1 and KIF23 interaction in modulating the cell‐cycle and cisplatin resistance of head and neck squamous cell carcinoma
inferred← citeshttps://doi.org/10.1002/iid3.608openalex-snapshot
Characterizing the landscape of cervical squamous cell carcinoma immune microenvironment by integrating the single‐cell transcriptomics and RNA‐Seq
inferred← citeshttps://doi.org/10.1002/iid3.70327openalex-snapshot
Integrative Omics Analysis Reveals the Potential Value of CEACAM6 in Pan‐Gastrointestinal Cancers
inferred← citeshttps://doi.org/10.1002/j.2040-4603.2020.tb00127.xopenalex-snapshot
Single‐Cell Transcriptomic Analysis
inferred← citeshttps://doi.org/10.1002/jcp.29672openalex-snapshot
LncRNA SNHG6 plays an oncogenic role in colorectal cancer and can be used as a prognostic biomarker for solid tumors
inferred← citeshttps://doi.org/10.1002/jgm.3508openalex-snapshot
Integrated transcriptome, proteome and single‐cell sequencing uncover the prognostic and immunological features of colony‐stimulating factor 3 receptor in pan‐cancer
inferred← citeshttps://doi.org/10.1002/jlb.5ma0721-825ropenalex-snapshot
Dynamic changes in human single-cell transcriptional signatures during fatal sepsis
inferred← citeshttps://doi.org/10.1002/mc.23535openalex-snapshot
MYO1B as a prognostic biomarker and a therapeutic target in Arecoline‐associated oral carcinoma
inferred← citeshttps://doi.org/10.1002/mc.70088openalex-snapshot
Integrated Analysis Reveals ZNF184 as a Novel Regulator of Stemness‐Associated Paclitaxel Resistance and Tumor Progression in Breast Cancer
inferred← citeshttps://doi.org/10.1002/mco2.70792openalex-snapshot
DDX21 Promotes Breast Cancer Growth and Metastasis via Stimulating RNAPII Elongation During Hypoxia
inferred← citeshttps://doi.org/10.1002/pmic.202400409openalex-snapshot
Dynamic Proteomic and Acetylomic Profiling of Mechanically Induced Cancer Stemness in Breast Cancer Cells
inferred← citeshttps://doi.org/10.1002/tox.24079openalex-snapshot
Exploration of SERPINA family functions and prognostic value in breast cancer based on transcriptome and in vitro analysis
inferred← citeshttps://doi.org/10.1007/978-1-0716-4734-9_18openalex-snapshot
Bioinformatics Analysis of Transcriptomic Data (Bulk and scRNA-Seq) for Immuno-Oncology
inferred← citeshttps://doi.org/10.1007/978-3-030-87821-4_5openalex-snapshot
Transcriptomics at the Single Cell Level and Human Diseases: Opportunities and Challenges in Data Processing and Analysis
inferred← citeshttps://doi.org/10.1007/978-981-97-6703-8_1openalex-snapshot
Introduction to Single-Cell RNA-seq Data Analysis
inferred← citeshttps://doi.org/10.1007/978-981-99-0846-2_43-1openalex-snapshot
Application of Single-Cell Sequencing on Stem Cell Research
inferred← citeshttps://doi.org/10.1007/978-981-99-7119-0_43openalex-snapshot
Application of Single-Cell Sequencing on Stem Cell Research
inferred← citeshttps://doi.org/10.1007/s00204-021-03040-0openalex-snapshot
Genetic variations in the CTLA-4 immune checkpoint pathway are associated with colon cancer risk, prognosis, and immune infiltration via regulation of IQCB1 expression
inferred← citeshttps://doi.org/10.1007/s00280-023-04630-8openalex-snapshot
Inhibition of proteinase-activated receptor 2 (PAR2) decreased the malignant progression of lung cancer cells and increased the sensitivity to chemotherapy
inferred← citeshttps://doi.org/10.1007/s00432-022-04164-1openalex-snapshot
AURKA is a prognostic potential therapeutic target in skin cutaneous melanoma modulating the tumor microenvironment, apoptosis, and hypoxia
inferred← citeshttps://doi.org/10.1007/s00432-022-04382-7openalex-snapshot
High expression of cuproptosis-related gene FDX1 in relation to good prognosis and immune cells infiltration in colon adenocarcinoma (COAD)
inferred← citeshttps://doi.org/10.1007/s00432-023-04814-yopenalex-snapshot
Systematic analysis of transcriptome signature for improving outcomes in lung adenocarcinoma
inferred← citeshttps://doi.org/10.1007/s00432-023-04986-7openalex-snapshot
Comprehensive landscape of the miRNA-regulated prognostic marker LAYN with immune infiltration and stemness in pan-cancer
inferred← citeshttps://doi.org/10.1007/s00432-023-05075-5openalex-snapshot
Multi-omics analysis of expression profile and prognostic values of connexin family in LUAD
inferred← citeshttps://doi.org/10.1007/s00432-023-05362-1openalex-snapshot
The prognostic and immunological role of FKBP1A in an integrated muti-omics cancers analysis, especially lung cancer
inferred← citeshttps://doi.org/10.1007/s00432-024-05870-8openalex-snapshot
Identifying and validating the roles of the cuproptosis-related gene DKC1 in cancer with a focus on esophageal carcinoma
inferred← citeshttps://doi.org/10.1007/s00438-022-01860-yopenalex-snapshot
Characterization and clinical relevance of PDGFRA pathway copy number variation gains across human cancers
inferred← citeshttps://doi.org/10.1007/s10142-024-01322-1openalex-snapshot
Exploring the potential biological function of GRK2 in colorectal cancer
inferred← citeshttps://doi.org/10.1007/s10142-024-01338-7openalex-snapshot
Comprehensive pan-cancer analysis reveals SIRT5 is a predictive biomarker for prognosis and immunotherapy response
inferred← citeshttps://doi.org/10.1007/s10142-026-01941-wopenalex-snapshot
Multi-omics analysis positions DNA2 at the interface of genome integrity programs and tumor behavior in pan-cancer
inferred← citeshttps://doi.org/10.1007/s10142-026-02008-6openalex-snapshot
Integrative multi-omics analysis identifies SMIM24 as a favorable prognostic biomarker in clear cell renal cell carcinoma
inferred← citeshttps://doi.org/10.1007/s10238-025-01919-1openalex-snapshot
Decoding intratumoral cyclooxygenase-2 signaling through multi-omics: insights from esophageal cancer and beyond
inferred← citeshttps://doi.org/10.1007/s10238-026-02042-5openalex-snapshot
MUC1/CA15-3 identifies a clear cell renal carcinoma characterized by Sunitinib response with a specific metabolic signature
inferred← citeshttps://doi.org/10.1007/s10238-026-02061-2openalex-snapshot
Alternative splicing events show high prognostic values and indicate potential core genes in acute myeloid leukemia
inferred← citeshttps://doi.org/10.1007/s10238-026-02081-yopenalex-snapshot
CHD4 epigenetically coordinates genomic instability and immunosuppression to drive pan-cancer progression and confer HDAC inhibitor sensitivity
inferred← citeshttps://doi.org/10.1007/s10495-023-01919-0openalex-snapshot
Comprehensive pan-cancer analysis reveals CCDC58 as a carcinogenic factor related to immune infiltration
inferred← citeshttps://doi.org/10.1007/s10495-025-02188-9openalex-snapshot
Multi-omics analysis revealed heterogeneity of AARS1 and AARS2 in pan-cancer and identified AARS1 as a potential prognostic biomarker for urologic neoplasms
inferred← citeshttps://doi.org/10.1007/s10528-023-10615-2openalex-snapshot
KNSTRN Is a Prognostic Biomarker That Is Correlated with Immune Infiltration in Breast Cancer and Promotes Cell Cycle and Proliferation
inferred← citeshttps://doi.org/10.1007/s10528-025-11034-1openalex-snapshot
TNIP1 Impacts Prognosis by Modulating the Immune Microenvironment in BRCA
inferred← citeshttps://doi.org/10.1007/s11033-025-10359-9openalex-snapshot
mir-188‐5p emerges as an oncomir to promote chronic myeloid leukemia via upregulation of BUB3 and SUMO2
inferred← citeshttps://doi.org/10.1007/s12013-023-01211-7openalex-snapshot
Multi-omics Analyses Reveal Function of Apolipoprotein E in Alternative Splicing and Tumor Immune Microenvironment in Kidney Renal Clear Cell Carcinoma via Pan-cancer Analysis
inferred← citeshttps://doi.org/10.1007/s12015-022-10403-2openalex-snapshot
S100A6 as a Constituent and Potential Marker of Adult and Cancer Stem Cells
inferred← citeshttps://doi.org/10.1007/s12032-021-01478-xopenalex-snapshot
Elevated LINC01550 induces the apoptosis and cell cycle arrest of melanoma
inferred← citeshttps://doi.org/10.1007/s12032-024-02358-wopenalex-snapshot
P4HA2 contributes to head and neck squamous cell carcinoma progression and EMT through PI3K/AKT signaling pathway
inferred← citeshttps://doi.org/10.1007/s12033-025-01404-wopenalex-snapshot
DSCC1 Identified as Promising Tumor Biomarker and Potential Therapeutic Target Through Comprehensive Multi-omics Analysis and Experimental Validation
inferred← citeshttps://doi.org/10.1007/s12539-023-00574-yopenalex-snapshot
scFED: Clustering Identifying Cell Types of scRNA-Seq Data Based on Feature Engineering Denoising
inferred← citeshttps://doi.org/10.1007/s12551-023-01092-3openalex-snapshot
Progress in single-cell multimodal sequencing and multi-omics data integration
inferred← citeshttps://doi.org/10.1007/s12672-023-00738-8openalex-snapshot
The biological significance of cuproptosis-key gene MTF1 in pan-cancer and its inhibitory effects on ROS-mediated cell death of liver hepatocellular carcinoma
inferred← citeshttps://doi.org/10.1007/s12672-024-01000-5openalex-snapshot
Pan-cancer analysis of prognostic and immunological role of IL4I1 in human tumors: a bulk omics research and single cell sequencing validation
inferred← citeshttps://doi.org/10.1007/s12672-024-01084-zopenalex-snapshot
Construction and assessment of an angiogenesis-related gene signature for prognosis of head and neck squamous cell carcinoma
inferred← citeshttps://doi.org/10.1007/s12672-024-01174-yopenalex-snapshot
Integrative analysis reveals the potential prognostic roles and immunological values of unc-5 netrin receptor A (UNC5A) in glioma
inferred← citeshttps://doi.org/10.1007/s12672-024-01314-4openalex-snapshot
A cancer-associated fibroblasts related risk score (CAFscore) helps to guide prognosis and personal treatment for Glioblastoma
inferred← citeshttps://doi.org/10.1007/s12672-024-01326-0openalex-snapshot
EBNA1BP2 identified as potential prognostic biomarker for multiple tumor types in pan-cancer analysis
inferred← citeshttps://doi.org/10.1007/s12672-024-01513-zopenalex-snapshot
SPINK5 is a key regulator of eosinophil extracellular traps in head and neck squamous cell carcinoma
inferred← citeshttps://doi.org/10.1007/s12672-024-01516-wopenalex-snapshot
GLN2 as a key biomarker and therapeutic target: evidence from a comprehensive pan-cancer study using molecular, functional, and bioinformatic analyses
inferred← citeshttps://doi.org/10.1007/s12672-024-01519-7openalex-snapshot
NEK2 is a potential pan-cancer biomarker and immunotherapy target
inferred← citeshttps://doi.org/10.1007/s12672-024-01615-8openalex-snapshot
Development of a novel centrosome-related risk signature to predict prognosis and treatment response in lung adenocarcinoma
inferred← citeshttps://doi.org/10.1007/s12672-024-01697-4openalex-snapshot
Systematic pan-cancer analysis identifies ZBTB11 as a potential pan-cancer biomarker and immunotherapy target in multiple tumor types
inferred← citeshttps://doi.org/10.1007/s12672-025-01767-1openalex-snapshot
Integrated bioinformatics and experimental analysis of CHAF1B as a novel biomarker and immunotherapy target in LUAD
inferred← citeshttps://doi.org/10.1007/s12672-025-01801-2openalex-snapshot
Pan-cancer analysis and single-cell analysis identifies the CENPN as a biomarker for survival prognosis and immunotherapy
inferred← citeshttps://doi.org/10.1007/s12672-025-02004-5openalex-snapshot
Pan-cancer characterization of C–C motif chemokine ligand 5 (CCL5) identifies its role as biomarker and therapeutic target
inferred← citeshttps://doi.org/10.1007/s12672-025-02045-wopenalex-snapshot
EXO1's pan-cancer roles: diagnostic, prognostic, and immunological analyses through bioinformatics
inferred← citeshttps://doi.org/10.1007/s12672-025-02061-wopenalex-snapshot
Pan-cancer analysis of the prognosis and immune infiltration of NSUN7 and its potential function in renal clear cell carcinoma
inferred← citeshttps://doi.org/10.1007/s12672-025-02085-2openalex-snapshot
Downregulated STAT3 and STAT5B are prognostic biomarkers for colorectal cancer and are associated with immune infiltration
inferred← citeshttps://doi.org/10.1007/s12672-025-02308-6openalex-snapshot
Identification of the disulfidptosis-related key gene CD2AP as a potential biomarker and new therapeutic target for LUAD patients by comprehensive multi-omics analysis
inferred← citeshttps://doi.org/10.1007/s12672-025-02361-1openalex-snapshot
Comprehensive pan-cancer analysis of PPP1R3G reveals its diagnostic, prognostic, and immunotherapeutic implications
inferred← citeshttps://doi.org/10.1007/s12672-025-02631-yopenalex-snapshot
hsa-let-7b-5p/TMPO-AS1-mediated ceRNA networks are linked to poor prognosis for lung cancer patients with FOXM1/MAD2L1 axis
inferred← citeshttps://doi.org/10.1007/s12672-025-02745-3openalex-snapshot
Integrated analysis unraveling the immunologic and clinical prognostic values of synaptotagmin like 4 in pan-cancer
inferred← citeshttps://doi.org/10.1007/s12672-025-02981-7openalex-snapshot
Zwilch kinetochore protein affects the prognosis of cancer patients by participating in cell proliferation, enhancing cell communication, and reshaping the tumor microenvironment
inferred← citeshttps://doi.org/10.1007/s12672-025-03095-wopenalex-snapshot
Selection of tumor invasion-related genes to build a prognostic model and predict immune response and potential drugs for esophageal cancer patients based on WGCNA
inferred← citeshttps://doi.org/10.1007/s12672-025-03384-4openalex-snapshot
Pan-cancer analysis of PTPN6: prognostic significance and functional implications in tumor progression
inferred← citeshttps://doi.org/10.1007/s12672-025-03818-zopenalex-snapshot
GNPNAT1 acts as a prognostic biomarker associated with immune infiltration in lung adenocarcinoma and promotes the proliferation and invasion of cancer cells
inferred← citeshttps://doi.org/10.1007/s12672-025-04124-4openalex-snapshot
A pan-cancer analysis of CTSC as a candidate prognostic and immune-related biomarker
inferred← citeshttps://doi.org/10.1007/s12672-025-04174-8openalex-snapshot
Systematic pan-cancer analysis of IL3RA carcinogenesis in human tumors, combined with bioinformatics analysis
inferred← citeshttps://doi.org/10.1007/s12672-025-04309-xopenalex-snapshot
Integrative immunogenomic profiling identifies CALU as a brown adipocyte–linked modulator of progression and treatment response in pancreatic cancer
inferred← citeshttps://doi.org/10.1007/s12672-026-04558-4openalex-snapshot
Pan-cancer multi-omics dissection of podosome-related genes reveals their dual roles in tumor invasion and immune modulation
inferred← citeshttps://doi.org/10.1007/s12672-026-04614-zopenalex-snapshot
Integrated single-cell and bulk transcriptomic analyses reveal cellular and molecular mechanisms of ABC-type DLBCL progression and prognosis
inferred← citeshttps://doi.org/10.1007/s12672-026-04633-wopenalex-snapshot
Bioinformatics and clinical analysis reveal the potential diagnostic and prognostic role of DLD for pan cancer and renal carcinoma
inferred← citeshttps://doi.org/10.1007/s12672-026-04646-5openalex-snapshot
Bioinformatic analysis and experimental validation of the function of mitogen-activated protein kinase in esophageal cancer
inferred← citeshttps://doi.org/10.1007/s12672-026-04729-3openalex-snapshot
S1PR4 connects cancer pain to pan-cancer mechanisms and reveals prognosis, immune infiltration and therapeutic potential
inferred← citeshttps://doi.org/10.1007/s12672-026-04750-6openalex-snapshot
S100A13 transcriptionally activated by SP1 facilitates osteosarcoma metastasis
inferred← citeshttps://doi.org/10.1007/s12672-026-04806-7openalex-snapshot
Comprehensive bioinformatic analysis reveals TRPM4 as a biomarker for pan-cancer progression and macrophage infiltration
inferred← citeshttps://doi.org/10.1007/s12672-026-04919-zopenalex-snapshot
Comprehensive profiling of RPP40 across human cancers reveals its essential role and multidimensional clinical correlates
inferred← citeshttps://doi.org/10.1007/s12672-026-04930-4openalex-snapshot
PPP4C-related metastasis genes serve as a prognostic signature and potential therapeutic target in renal cell carcinoma
inferred← citeshttps://doi.org/10.1007/s12672-026-04949-7openalex-snapshot
Comprehensive pan-cancer analysis of FSCN1 as a marker for prognosis and immunity
inferred← citeshttps://doi.org/10.1007/s12672-026-05109-7openalex-snapshot
Integrated single-cell and bulk transcriptomic analyses unveil a necroptosis-related prognostic model and its association with tumor microenvironment remodeling in gastric cancer
inferred← citeshttps://doi.org/10.1007/s12672-026-05188-6openalex-snapshot
Multi-omics and spatial transcriptomics identify KCMF1 as an immune-metabolic driver of hepatocellular carcinoma progression
inferred← citeshttps://doi.org/10.1007/s12672-026-05305-5openalex-snapshot
Aberrant expression of GBP5 in tumor-infiltrating immune cells as an onco-immunological biomarker in pan-cancer
inferred← citeshttps://doi.org/10.1007/s13167-022-00305-1openalex-snapshot
Comprehensive multi-omics analysis of the m7G in pan-cancer from the perspective of predictive, preventive, and personalized medicine
inferred← citeshttps://doi.org/10.1007/s13258-025-01728-6openalex-snapshot
Integrative transcriptomics defines CD36 as a key regulator of immunometabolic signaling in acute myeloid leukemia
inferred← citeshttps://doi.org/10.1007/s13353-024-00919-3openalex-snapshot
Prognostic biomarker MICAL2 and associates with proliferation, migration and immune infiltration in pancreatic adenocarcinoma
inferred← citeshttps://doi.org/10.1007/s13402-022-00765-7openalex-snapshot
The Breast Cancer Single-Cell Atlas: Defining cellular heterogeneity within model cell lines and primary tumors to inform disease subtype, stemness, and treatment options
inferred← citeshttps://doi.org/10.1007/s43032-025-01977-6openalex-snapshot
HERC2 as a Potential Biomarker for Prognosis and Response to Bevacizumab in Ovarian Cancer: A Bioinformatics Approach
inferred← citeshttps://doi.org/10.1007/s43657-021-00034-xopenalex-snapshot
Pan-cancer analysis identifies RNA helicase DDX1 as a prognostic marker
inferred← citeshttps://doi.org/10.1016/b978-0-12-822000-9.00006-9openalex-snapshot
Machine learning applications in cancer genomics
inferred← citeshttps://doi.org/10.1016/b978-0-323-98806-3.00001-5openalex-snapshot
Cell origin, biology, and pathophysiology of hepatocellular carcinoma
inferred← citeshttps://doi.org/10.1016/b978-0-443-13222-3.00010-1openalex-snapshot
Single-cell transcriptome profiling in unraveling distinct molecular signatures from cancer stem cells
inferred← citeshttps://doi.org/10.1016/bs.pmbts.2024.05.002openalex-snapshot
Exploring cutting-edge strategies for drug repurposing in female cancers – An insight into the tools of the trade
inferred← citeshttps://doi.org/10.1016/j.abb.2025.110551openalex-snapshot
The immunological and prognostic landscape of TFAP4 in cancer: A single-cell RNA sequencing perspective
inferred← citeshttps://doi.org/10.1016/j.asjsur.2026.03.240openalex-snapshot
Single-cell and bulk transcriptomics reveal IL31RA promotes macrophage infiltration and poor prognosis in head and neck squamous cell carcinoma
inferred← citeshttps://doi.org/10.1016/j.bbadis.2025.167669openalex-snapshot
Mechanistic insights into HNRNPA2B1: A comprehensive pan-cancer analysis and functional characterization in lung cancer
inferred← citeshttps://doi.org/10.1016/j.bbrc.2023.149344openalex-snapshot
Characterization and verification of CD81 as a potential target in lung squamous cell carcinoma
inferred← citeshttps://doi.org/10.1016/j.bbrc.2024.150600openalex-snapshot
Integrated pan-cancer analysis and experimental verification of the roles of meiotic nuclear divisions 1 in breast cancer
inferred← citeshttps://doi.org/10.1016/j.bbrep.2026.102649openalex-snapshot
Pan-cancer expression, methylation, and prognostic significance of α7 nicotinic acetylcholine receptor in tumor immunology
inferred← citeshttps://doi.org/10.1016/j.bioorg.2024.107574openalex-snapshot
Novel insight into mitochondrial dynamin-related protein-1 as a new chemo-sensitizing target in resistant cancer cells
inferred← citeshttps://doi.org/10.1016/j.bioorg.2026.110190openalex-snapshot
Integrative multi-omics and machine learning reveal PLAUR as a Pan-Cancer prognostic biomarker and potential therapeutic target
inferred← citeshttps://doi.org/10.1016/j.biopha.2026.119898openalex-snapshot
A luciferase-based high-throughput three-dimensional tumor spheroid model identifies a renieramycin T derivative with anti-cancer stem cell activity in non-small cell lung cancer
inferred← citeshttps://doi.org/10.1016/j.cancergen.2023.10.001openalex-snapshot
Pan-cancer genetic analysis of disulfidptosis-related gene set
inferred← citeshttps://doi.org/10.1016/j.canlet.2024.216911openalex-snapshot
FTO elicits tumor neovascularization in cancer-associated fibroblasts through eliminating m6A modifications of multiple pro-angiogenic factors
inferred← citeshttps://doi.org/10.1016/j.canlet.2025.217804openalex-snapshot
Lactylation-boosted polycomb repression of KLF4 elicits glycolysis in retinoblastoma: A positive feedback circuit between histone modifications
inferred← citeshttps://doi.org/10.1016/j.canlet.2026.218613openalex-snapshot
Single-cell spatial transcriptional profiling of pancreatic ductal adenocarcinoma uncovers key immune-modulating and pro-metastatic mechanisms
inferred← citeshttps://doi.org/10.1016/j.ccell.2025.02.009openalex-snapshot
Single-cell multi-stage spatial evolutional map of esophageal carcinogenesis
inferred← citeshttps://doi.org/10.1016/j.ccell.2026.06.009openalex-snapshot
Spatial multi-omics landscape of colorectal cancer macro- and micrometastases
inferred← citeshttps://doi.org/10.1016/j.cellsig.2025.111657openalex-snapshot
UFMylation in tumorigenesis: Mechanistic insights and therapeutic opportunities
inferred← citeshttps://doi.org/10.1016/j.celrep.2022.111420openalex-snapshot
Characterization of the minimal residual disease state reveals distinct evolutionary trajectories of human glioblastoma
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2024.108247openalex-snapshot
Exploring a novel four-gene system as a diagnostic and prognostic biomarker for triple-negative breast cancer, using clinical variables
inferred← citeshttps://doi.org/10.1016/j.compbiolchem.2026.109476openalex-snapshot
Integrative multi-omics analysis reveals UBE2C as a potential prognostic biomarker and therapeutic target of breast cancer
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2022.106000openalex-snapshot
S100A10 might be a novel prognostic biomarker for head and neck squamous cell carcinoma based on bioinformatics analysis
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2023.107593openalex-snapshot
Tumor biology, immune infiltration and liver function define seven hepatocellular carcinoma subtypes linked to distinct drivers, survival and drug response
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2024.108179openalex-snapshot
Integrated analysis of single-cell and bulk RNA sequencing data reveals the association between hypoxic tumor cells and exhausted T cells in predicting immune therapy response
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2024.108666openalex-snapshot
Deep pan-cancer analysis and multi-omics evidence reveal that ALG3 inhibits CD8+ T cell infiltration by suppressing chemokine secretion and is associated with 5-fluorouracil sensitivity
inferred← citeshttps://doi.org/10.1016/j.compbiomed.2025.110768openalex-snapshot
ACSS2 in pan-cancer context: multi-omics insights into metabolic reprogramming and immunotherapy response
inferred← citeshttps://doi.org/10.1016/j.critrevonc.2025.104677openalex-snapshot
Heterogeneity of the tumor immune cell microenvironment revealed by single-cell sequencing in head and neck cancer
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.01.015openalex-snapshot
Automated methods for cell type annotation on scRNA-seq data
inferred← citeshttps://doi.org/10.1016/j.csbj.2021.10.027openalex-snapshot
Automatic cell type identification methods for single-cell RNA sequencing
inferred← citeshttps://doi.org/10.1016/j.csbj.2024.04.057openalex-snapshot
NTCdb: Single-cell transcriptome database of human inflammatory-associated diseases
inferred← citeshttps://doi.org/10.1016/j.dnarep.2023.103531openalex-snapshot
Clinical evidence for a role of E2F1-induced replication stress in modulating tumor mutational burden and immune microenvironment
inferred← citeshttps://doi.org/10.1016/j.ebiom.2023.104612openalex-snapshot
Identification of cervical cancer stem cells using single-cell transcriptomes of normal cervix, cervical premalignant lesions, and cervical cancer
inferred← citeshttps://doi.org/10.1016/j.ebiom.2025.106025openalex-snapshot
A unified single-cell atlas of human lung provides insights into pulmonary diseases
inferred← citeshttps://doi.org/10.1016/j.ebiom.2026.106256openalex-snapshot
Integrated spatial multi-omics delineates fatty acid degradation fuels malignant evolution at the tumour periphery in cervical squamous cell carcinoma
inferred← citeshttps://doi.org/10.1016/j.ejphar.2024.176840openalex-snapshot
Comprehensive analysis of MAPK genes in the prognosis, immune characteristics, and drug treatment of renal clear cell carcinoma using bioinformatic analysis and Mendelian randomization
inferred← citeshttps://doi.org/10.1016/j.freeradbiomed.2020.02.031openalex-snapshot
Pyridoxine enhances chemo-responsiveness of breast cancer stem cells via redox reconditioning
inferred← citeshttps://doi.org/10.1016/j.gde.2024.102158openalex-snapshot
Approaches to probe and perturb long noncoding RNA functions in diseases
inferred← citeshttps://doi.org/10.1016/j.gendis.2024.101433openalex-snapshot
HMGN2 accelerates the proliferation and cell cycle progression of glioblastoma by regulating CDC20 expression
inferred← citeshttps://doi.org/10.1016/j.gendis.2026.102046openalex-snapshot
Dysregulation of ceRNA mechanisms across pan-cancer drives cancer progression towards acquiring metastatic potential
inferred← citeshttps://doi.org/10.1016/j.gene.2022.146325openalex-snapshot
A comprehensive bioinformatic analysis of cyclin-dependent kinase 2 (CDK2) in glioma
inferred← citeshttps://doi.org/10.1016/j.genrep.2026.102508openalex-snapshot
Analysis and experimental validation of FABP6 as a pan-cancer prognostic biomarker associated with EMT in renal cell carcinoma
inferred← citeshttps://doi.org/10.1016/j.gpb.2022.04.001openalex-snapshot
deCS : A Tool for Systematic Cell Type Annotations of Single-Cell RNA Sequencing Data Among Human Tissues
inferred← citeshttps://doi.org/10.1016/j.heliyon.2022.e09033openalex-snapshot
Identification of autophagy related genes in predicting the prognosis and aiding 5- fluorouracil therapy of colorectal cancer
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e13456openalex-snapshot
A combined analysis of bulk and single-cell sequencing data reveals metabolic enzyme, pyruvate dehydrogenase E1 subunit beta (PDHB), as a prediction biomarker for the tumor immune response and immunotherapy
inferred← citeshttps://doi.org/10.1016/j.heliyon.2023.e19805openalex-snapshot
Role of LncRNA MIR99AHG in breast cancer: Bioinformatic analysis and preliminary verification
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e24236openalex-snapshot
Identifying the prognosis implication, immunotherapy response prediction value, and potential targeted compound inhibitors of integrin subunit α3 (ITGA3) in human cancers
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e28928openalex-snapshot
Distinct roles of CD244 expression in cancer diagnosis and prognosis: A pan-cancer analysis
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e29171openalex-snapshot
Mitochondrial ribosomal protein S24 is associated with immunosuppressive microenvironment and cold tumor in lung adenocarcinoma
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e29275openalex-snapshot
Clinical significance of immune-related antigen CD58 in gliomas and analysis of its potential core related gene clusters
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e29504openalex-snapshot
An integrated analysis revealing the angiogenic function of TP53I11 in tumor microenvironment
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e30446openalex-snapshot
Prognostic value and immunological function of cuproptosis-related genes in lung adenocarcinoma
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e33206openalex-snapshot
Comprehensive analysis and experimental verification reveal the molecular characteristics of EGLN3 in pan-cancer and its relationship with the proliferation and apoptosis of lung cancer
inferred← citeshttps://doi.org/10.1016/j.heliyon.2024.e37402openalex-snapshot
Deciphering the multidimensional impact of IGFBP1 expression on cancer prognosis, genetic alterations, and cellular functionality: A comprehensive Pan-cancer analysis
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2024.137862openalex-snapshot
Integration of eQTL and multi-omics comprehensive analysis of triacylglycerol synthase 1 (TGS1) as a prognostic and immunotherapeutic biomarker across pan-cancer
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.142415openalex-snapshot
Single-cell and spatial analyses reveal the effect of VSIG4+S100A10+TAMs on the immunosuppression of glioblastoma and anti-PD-1 immunotherapy
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.143543openalex-snapshot
TFDP1 drives triple-negative breast Cancer development through senescence suppression and serves as a therapeutic target for topotecan
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.146964openalex-snapshot
Integrative spatial multi-omics identifies the TEK receptor tyrosine kinase as a central biomacromolecule of endothelial-immune interactions in glioblastoma
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.148136openalex-snapshot
Bone morphogenetic protein 1 as a macromolecular pan-cancer biomarker modulating the immune microenvironment and malignant phenotypes in glioblastoma
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.149128openalex-snapshot
Pan-cancer analysis identifies adhesion G protein-coupled receptor G6 as a potential prognostic and immunotherapeutic biomarker with its functional validation
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2025.149542openalex-snapshot
SHC Adaptor Protein 1 Drives Cancer-Associated Fibroblast–Mediated Immune Exclusion and Notch-Dependent Angiogenesis
inferred← citeshttps://doi.org/10.1016/j.ijbiomac.2026.150951openalex-snapshot
Integration of TWAS with single-cell and spatial transcriptomics identifies TLR1 as a susceptibility gene and therapeutic target in the breast cancer tumor microenvironment
inferred← citeshttps://doi.org/10.1016/j.imlet.2022.04.008openalex-snapshot
Single Cell Multiomic Approaches to Disentangle T Cell Heterogeneity
inferred← citeshttps://doi.org/10.1016/j.intimp.2023.110580openalex-snapshot
ADAM12 promotes the resistance of lung adenocarcinoma cells to EGFR-TKI and regulates the immune microenvironment by activating PI3K/Akt/mTOR and RAS signaling pathways
inferred← citeshttps://doi.org/10.1016/j.intimp.2023.111286openalex-snapshot
A novel transcriptomic signature associated with lymphovascular invasion predicts clinical outcomes, tumor microenvironment, and therapeutic response in lung adenocarcinoma
inferred← citeshttps://doi.org/10.1016/j.intimp.2024.113364openalex-snapshot
Comprehensive multi-omics analysis of the prognostic value and immune signature of NCF2 in pan-cancer and its relationship with acute myeloid leukemia
inferred← citeshttps://doi.org/10.1016/j.intimp.2024.113841openalex-snapshot
Unveiling the role of ACTL6A in uveal melanoma metastasis and immune microenvironment
inferred← citeshttps://doi.org/10.1016/j.isci.2020.100882openalex-snapshot
scCATCH: Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
inferred← citeshttps://doi.org/10.1016/j.isci.2022.104631openalex-snapshot
Genetic association and single-cell transcriptome analyses reveal distinct features connecting autoimmunity with cancers
inferred← citeshttps://doi.org/10.1016/j.isci.2022.105244openalex-snapshot
A compendium of co-regulated mitoribosomal proteins in pan-cancer uncovers collateral defective events in tumor malignancy
inferred← citeshttps://doi.org/10.1016/j.isci.2023.108055openalex-snapshot
Systematic analysis reveals a pan-cancer SNHG family signature predicting prognosis and immunotherapy response
inferred← citeshttps://doi.org/10.1016/j.isci.2024.110318openalex-snapshot
Neuromedin U receptor 1 deletion leads to impaired immunotherapy response and high malignancy in colorectal cancer
inferred← citeshttps://doi.org/10.1016/j.isci.2025.111765openalex-snapshot
Single-cell and spatial transcriptomics reveal pre-metastatic subsets and therapeutic targets in penile carcinoma
inferred← citeshttps://doi.org/10.1016/j.isci.2026.116131openalex-snapshot
HyDRA: A pipeline for integrating long- and short-read RNAseq data for custom transcriptome assembly
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