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Ensembl 2020

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1016/j.cell.2016.11.007openalex-snapshot

The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery

inferredcites →https://doi.org/10.1038/35057062openalex-snapshot

Initial sequencing and analysis of the human genome

inferredcites →https://doi.org/10.1038/nature11247openalex-snapshot

An integrated encyclopedia of DNA elements in the human genome

inferredcites →https://doi.org/10.1038/nbt.2153openalex-snapshot

BLUEPRINT to decode the epigenetic signature written in blood

inferredcites →https://doi.org/10.1038/nbt1010-1045openalex-snapshot

The NIH Roadmap Epigenomics Mapping Consortium

inferredcites →https://doi.org/10.1038/nmeth.4499openalex-snapshot

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

inferredcites →https://doi.org/10.1038/nmeth0410-248openalex-snapshot

A method and server for predicting damaging missense mutations

inferredcites →https://doi.org/10.1038/nprot.2009.86openalex-snapshot

Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm

inferredcites →https://doi.org/10.1038/s41467-019-10016-3openalex-snapshot

Flexible and scalable diagnostic filtering of genomic variants using G2P with Ensembl VEP

inferredcites →https://doi.org/10.1038/s41467-020-15848-yopenalex-snapshot

Haplotype-resolved genomes provide insights into structural variation and gene content in Angus and Brahman cattle

inferredcites →https://doi.org/10.1073/pnas.1720115115openalex-snapshot

Earth BioGenome Project: Sequencing life for the future of life

inferredcites →https://doi.org/10.1093/bioinformatics/btu613openalex-snapshot

The Ensembl REST API: Ensembl Data for Any Language

inferredcites →https://doi.org/10.1093/bioinformatics/bty191openalex-snapshot

Minimap2: pairwise alignment for nucleotide sequences

inferredcites →https://doi.org/10.1093/bioinformatics/btz856openalex-snapshot

SPDI: data model for variants and applications at NCBI

inferredcites →https://doi.org/10.1093/database/bar030openalex-snapshot

Ensembl BioMarts: a hub for data retrieval across taxonomic space

inferredcites →https://doi.org/10.1093/database/bav096openalex-snapshot

Ensembl comparative genomics resources

inferredcites →https://doi.org/10.1093/database/baw053openalex-snapshot

Ensembl comparative genomics resources

inferredcites →https://doi.org/10.1093/database/baw093openalex-snapshot

The Ensembl gene annotation system

inferredcites →https://doi.org/10.1093/database/bax020openalex-snapshot

Ensembl core software resources: storage and programmatic access for DNA sequence and genome annotation

inferredcites →https://doi.org/10.1093/database/bay119openalex-snapshot

Ensembl variation resources

inferredcites →https://doi.org/10.1093/gigascience/giaa051openalex-snapshot

An improved pig reference genome sequence to enable pig genetics and genomics research

inferredcites →https://doi.org/10.1093/nar/29.1.308openalex-snapshot

dbSNP: the NCBI database of genetic variation

inferredcites →https://doi.org/10.1093/nar/gkh073openalex-snapshot

Database resources of the National Center for Biotechnology Information: update

inferredcites →https://doi.org/10.1093/nar/gkr1006openalex-snapshot

The International Nucleotide Sequence Database Collaboration

inferredcites →https://doi.org/10.1093/nar/gks1084openalex-snapshot

The International Nucleotide Sequence Database Collaboration

inferredcites →https://doi.org/10.1093/nar/gkv1344openalex-snapshot

The Pfam protein families database: towards a more sustainable future

inferredcites →https://doi.org/10.1093/nar/gkw1138openalex-snapshot

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

inferredcites →https://doi.org/10.1093/nar/gkx1011openalex-snapshot

Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species

inferredcites →https://doi.org/10.1093/nar/gkx1038openalex-snapshot

Rfam 13.0: shifting to a genome-centric resource for non-coding RNA families

inferredcites →https://doi.org/10.1093/nar/gkx1069openalex-snapshot

Gene3D: Extensive prediction of globular domains in proteins

inferredcites →https://doi.org/10.1093/nar/gkx1141openalex-snapshot

DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA–gene interactions

inferredcites →https://doi.org/10.1093/nar/gkx1153openalex-snapshot

ClinVar: improving access to variant interpretations and supporting evidence

inferredcites →https://doi.org/10.1093/nar/gkx922openalex-snapshot

20 years of the SMART protein domain annotation resource

inferredcites →https://doi.org/10.1093/nar/gky1016openalex-snapshot

CADD: predicting the deleteriousness of variants throughout the human genome

inferredcites →https://doi.org/10.1093/nar/gky1049openalex-snapshot

UniProt: a worldwide hub of protein knowledge

inferredcites →https://doi.org/10.1093/nar/gky1069openalex-snapshot

Database resources of the National Center for Biotechnology Information

inferredcites →https://doi.org/10.1093/nar/gky1113openalex-snapshot

Ensembl 2019

inferredcites →https://doi.org/10.1093/nar/gky1114openalex-snapshot

SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for proteins

inferredcites →https://doi.org/10.1093/nar/gky949openalex-snapshot

Protein Data Bank: the single global archive for 3D macromolecular structure data

inferredcites →https://doi.org/10.1093/nar/gky955openalex-snapshot

GENCODE reference annotation for the human and mouse genomes

inferredcites →https://doi.org/10.1101/531210openalex-snapshot

The mutational constraint spectrum quantified from variation in 141,456 humans

inferredcites →https://doi.org/10.1101/578674openalex-snapshot

An open resource of structural variation for medical and population genetics

inferredcites →https://doi.org/10.1101/683722openalex-snapshot

funMotifs: Tissue-specific transcription factor motifs

inferredcites →https://doi.org/10.1101/720797openalex-snapshot

Haplotype-Resolved Cattle Genomes Provide Insights Into Structural Variation and Adaptation

inferredcites →https://doi.org/10.1101/gr.136184.111openalex-snapshot

ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia

inferredcites →https://doi.org/10.1101/gr.3577405openalex-snapshot

Distribution and intensity of constraint in mammalian genomic sequence

inferredcites →https://doi.org/10.1126/science.1262110openalex-snapshot

The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans

inferredcites →https://doi.org/10.1186/gb-2012-13-10-r98openalex-snapshot

CHANCE: comprehensive software for quality control and validation of ChIP-seq data

inferredcites →https://doi.org/10.1186/s13059-015-0621-5openalex-snapshot

The Ensembl Regulatory Build

inferredcites →https://doi.org/10.1186/s13059-016-0974-4openalex-snapshot

The Ensembl Variant Effect Predictor

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.2139/ssrn.3748591openalex-extracted

KiRNet: Integrated, Kinase-Centered Network Modeling Predicts Mechanisms Behind Phenotypic Associations

inferred← citeshttps://doi.org/10.5281/zenodo.22642458zenodo-depositor-declared

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Arachidonic acid, a clinically adverse mediator in the ovarian cancer microenvironment, impairs JAK‐STAT signaling in macrophages by perturbing lipid raft structures

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Tethering Cells via Enzymatic Oxidative Crosslinking Enables Mechanotransduction in Non‐Cell‐Adhesive Materials

inferred← citeshttps://doi.org/10.1002/advs.202404326openalex-snapshot

The LIDPAD Mouse Model Captures the Multisystem Interactions and Extrahepatic Complications in MASLD

inferred← citeshttps://doi.org/10.1002/age.70078openalex-snapshot

Longitudinal Genome‐Wide Association Study for Female Fertility Traits in German Holstein Cattle

inferred← citeshttps://doi.org/10.1002/alz.12230openalex-snapshot

The APOE gene cluster responds to air pollution factors in mice with coordinated expression of genes that differs by age in humans

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Deletion of neuronal Idol ameliorates Alzheimer's disease–related pathologies via APOE receptors

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Evaluating the regulatory function of non‐coding autism‐associated single nucleotide polymorphisms on gene expression in human brain tissue

inferred← citeshttps://doi.org/10.1002/cbf.3648openalex-snapshot

Genetic and epigenetic control of ACE2 expression and its possible role in COVID ‐19

inferred← citeshttps://doi.org/10.1002/cne.25411openalex-snapshot

In vivo tracking of KCC2b expression during early brain development

inferred← citeshttps://doi.org/10.1002/cpz1.181openalex-snapshot

Validation of Circular RNAs Using RT‐qPCR After Effective Removal of Linear RNAs by Ribonuclease R

inferred← citeshttps://doi.org/10.1002/csc2.20692openalex-snapshot

Genome‐wide association mapping of Hagberg falling number, protein content, test weight, and grain yield in U.K. wheat

inferred← citeshttps://doi.org/10.1002/ctm2.534openalex-snapshot

Host transcriptional response to SARS‐CoV‐2 infection in COVID‐19 patients

inferred← citeshttps://doi.org/10.1002/dvdy.384openalex-snapshot

Assessing evolutionary and developmental transcriptome dynamics in homologous cell types

inferred← citeshttps://doi.org/10.1002/dvdy.466openalex-snapshot

Alternative LIM homeodomain splice variants are dynamically regulated at key developmental steps in vertebrates

inferred← citeshttps://doi.org/10.1002/dvg.23417openalex-snapshot

The adhesion GPCR Adgrg6 (Gpr126): Insights from the zebrafish model

inferred← citeshttps://doi.org/10.1002/ece3.8324openalex-snapshot

Influence of environmental conditions at spawning sites and migration routes on adaptive variation and population connectivity in Chinook salmon

inferred← citeshttps://doi.org/10.1002/ece3.8357openalex-snapshot

Exome sequencing of deer mice on two California Channel Islands identifies potential adaptation to strongly contrasting ecological conditions

inferred← citeshttps://doi.org/10.1002/humu.24245openalex-snapshot

Further evidence for de novo variants in SYNCRIP as the cause of a neurodevelopmental disorder

inferred← citeshttps://doi.org/10.1002/humu.24306openalex-snapshot

Pseudoexon activation in disease by non‐splice site deep intronic sequence variation — wild type pseudoexons constitute high‐risk sites in the human genome

inferred← citeshttps://doi.org/10.1002/humu.24489openalex-snapshot

Using single molecule Molecular Inversion Probes as a cost‐effective, high‐throughput sequencing approach to target all genes and loci associated with macular diseases

inferred← citeshttps://doi.org/10.1002/iid3.70376openalex-snapshot

The Intersection of m6A Methylation and Immune Response in PCOS: A Bioinformatics Perspective

inferred← citeshttps://doi.org/10.1002/jbmr.4248openalex-snapshot

Pleckstrin homology (PH) domain and Leucine Rich Repeat Phosphatase 1 (Phlpp1) Suppresses Parathyroid Hormone Receptor 1 (Pth1r) Expression and Signaling During Bone Growth

inferred← citeshttps://doi.org/10.1002/jex2.150openalex-snapshot

Oxidative stress‐induced changes in the transcriptomic profile of extracellular vesicles

inferred← citeshttps://doi.org/10.1002/jmv.27976openalex-snapshot

Analysis of ACE2 and TMPRSS2 coding variants as a risk factor for SARS‐CoV‐2 from 946 whole‐exome sequencing data in the Turkish population

inferred← citeshttps://doi.org/10.1002/jmv.29580openalex-snapshot

miR‐129‐5p inhibits anchorage‐independent growth through silencing of ACTN1 and the ELK4/c‐FOS axis in HPV‐transformed keratinocytes

inferred← citeshttps://doi.org/10.1002/mc.23359openalex-snapshot

Prognostic signatures and potential pathogenesis of eRNAs‐related genes in colon adenocarcinoma

inferred← citeshttps://doi.org/10.1002/mgg3.1603openalex-snapshot

Update of genetic variants in CEP120 and CC2D2A—With an emphasis on genotype‐phenotype correlations, tissue specific transcripts and exploring mutation specific exon skipping therapies

inferred← citeshttps://doi.org/10.1002/prot.26217openalex-snapshot

Evolutionary and structural constraints influencing apolipoprotein A‐I amyloid behavior

inferred← citeshttps://doi.org/10.1002/wrna.1657openalex-snapshot

The control of polycomb repressive complexes by long noncoding RNAs

inferred← citeshttps://doi.org/10.1002/wrna.1682openalex-snapshot

Unwinding the roles of RNA helicase MOV10

inferred← citeshttps://doi.org/10.1007/978-1-0716-1503-4_5openalex-snapshot

GENCODE Pseudogenes

inferred← citeshttps://doi.org/10.1007/978-1-0716-1681-9_4openalex-snapshot

Automated Phylogenetic Analysis Using Best Reciprocal BLAST

inferred← citeshttps://doi.org/10.1007/978-1-0716-1936-0_18openalex-snapshot

Accurate Prediction of Protein Sequences for Proteogenomics Data Integration

inferred← citeshttps://doi.org/10.1007/978-1-0716-1975-9_9openalex-snapshot

Analysis of Ribosome Profiling Data

inferred← citeshttps://doi.org/10.1007/978-1-0716-2067-0_5openalex-snapshot

Gramene: A Resource for Comparative Analysis of Plants Genomes and Pathways

inferred← citeshttps://doi.org/10.1007/978-1-0716-2301-5_8openalex-snapshot

CRISPR-on for Endogenous Activation of SMARCA4 Expression in Bovine Embryos

inferred← citeshttps://doi.org/10.1007/978-3-030-42634-7_110openalex-snapshot

Genetics of Age-Related Macular Degeneration

inferred← citeshttps://doi.org/10.1007/978-3-030-92034-0_8openalex-snapshot

Functional Implications of Intergenic GWAS SNPs in Immune-Related LncRNAs

inferred← citeshttps://doi.org/10.1007/978-3-032-24724-7_34openalex-snapshot

A Computational Module for sgRNA Design and Analysis Using the CRISPR-Cas9 Knock-Out System

inferred← citeshttps://doi.org/10.1007/978-3-319-90495-5_110-1openalex-snapshot

Genetics of Age-Related Macular Degeneration

inferred← citeshttps://doi.org/10.1007/978-981-19-4336-2_18openalex-snapshot

Broad Spectrum Amino Acid Racemases (Bsrs): A Potential Target in Microbial Research

inferred← citeshttps://doi.org/10.1007/978-981-99-3656-4_70openalex-snapshot

Exploring the Human USP Gene Family and Its Association with Cancer: An In Silico Study

inferred← citeshttps://doi.org/10.1007/s00018-026-06259-1openalex-snapshot

Retina-specific long non-coding RNAs associated with inherited retinal disease genes

inferred← citeshttps://doi.org/10.1007/s00239-021-10042-0openalex-snapshot

Evolution of DNA Methylation Across Ecdysozoa

inferred← citeshttps://doi.org/10.1007/s00335-021-09898-wopenalex-snapshot

Coding variants in mouse and rat model organisms: mousepost and ratpost

inferred← citeshttps://doi.org/10.1007/s00335-021-09936-7openalex-snapshot

Mouse genomic and cellular annotations

inferred← citeshttps://doi.org/10.1007/s00418-021-02052-2openalex-snapshot

Exosomes produced by melanoma cells significantly influence the biological properties of normal and cancer-associated fibroblasts

inferred← citeshttps://doi.org/10.1007/s00439-020-02246-zopenalex-snapshot

Missense3D-DB web catalogue: an atom-based analysis and repository of 4M human protein-coding genetic variants

inferred← citeshttps://doi.org/10.1007/s00439-021-02307-xopenalex-snapshot

Compensatory epistasis explored by molecular dynamics simulations

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Analysis of histone variant constraint and tissue expression suggests five potential novel human disease genes: H2AFY2, H2AFZ, H2AFY, H2AFV, H1F0

inferred← citeshttps://doi.org/10.1007/s00439-023-02600-xopenalex-snapshot

Circulating DNA reveals a specific and higher fragmentation of the Y chromosome

inferred← citeshttps://doi.org/10.1007/s00467-021-05312-4openalex-snapshot

Whole exome sequencing identifies monogenic forms of nephritis in a previously unsolved cohort of children with steroid-resistant nephrotic syndrome and hematuria

inferred← citeshttps://doi.org/10.1007/s00705-023-05747-0openalex-snapshot

HERV-K (HML-2) insertion polymorphisms in the 8q24.13 region and their potential etiological associations with acute myeloid leukemia

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Orthology-Aware Reanalysis of Replicated Public Transcriptomes Identifies Shared and Context-Dependent Low-Temperature Responses in Teleost Fishes

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Music of metagenomics—a review of its applications, analysis pipeline, and associated tools

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Immunogenomic profiling and pathological response results from a clinical trial of docetaxel and carboplatin in triple-negative breast cancer

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Genomic and epigenetic aberrations of chromosome 1p36.13 have prognostic implications in malignancies

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Investigating the impact of vitrification on bovine ovarian tissue morphology, follicle survival, and transcriptomic signature

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The GAIN Registry — a New Prospective Study for Patients with Multi-organ Autoimmunity and Autoinflammation

inferred← citeshttps://doi.org/10.1007/s11033-021-06517-4openalex-snapshot

Genetic predictors of sick sinus syndrome

inferred← citeshttps://doi.org/10.1007/s11033-025-10881-wopenalex-snapshot

Transcriptomic profiling of canine mammarygland tumors reveals subtype-specific and shared differentially expressed mRNAs

inferred← citeshttps://doi.org/10.1007/s11033-025-11242-3openalex-snapshot

The − 216G/T polymorphism in the EGFR gene: a review focusing on non-small cell lung cancer

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Transcriptome sequencing analysis of maize roots reveals the effects of substrate and root hair formation in a spatial context

inferred← citeshttps://doi.org/10.1007/s12020-025-04417-2openalex-snapshot

Long-term follow-up of growth and puberty in 3-M syndrome: effects of growth hormone therapy and response variability

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Serum levels and genetic variation of IL-35 are associated with multiple sclerosis: a population-based case–control study

inferred← citeshttps://doi.org/10.1007/s12031-021-01807-9openalex-snapshot

Network-Based Analysis of Cognitive Impairment and Memory Deficits from Transcriptome Data

inferred← citeshttps://doi.org/10.1007/s12035-024-04655-xopenalex-snapshot

EHMT2 as a Candidate Gene for an Autosomal Recessive Neurodevelopmental Syndrome

inferred← citeshttps://doi.org/10.1007/s13205-025-04580-3openalex-snapshot

Neuroprotective potential of Garcinia extracts against diabetic peripheral neuropathy: GC–MS profiling, network pharmacology, molecular docking, and in vitro studies

inferred← citeshttps://doi.org/10.1007/s13238-022-00915-5openalex-snapshot

Differential transcriptomic landscapes of multiple organs from SARS-CoV-2 early infected rhesus macaques

inferred← citeshttps://doi.org/10.1007/s13353-025-00978-0openalex-snapshot

Haplotypes affecting stillbirth and fertility in Icelandic Dairy Cattle

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In silico studies of selected multi-drug targeting against 3CLpro and nsp12 RNA-dependent RNA-polymerase proteins of SARS-CoV-2 and SARS-CoV

inferred← citeshttps://doi.org/10.1007/s42535-025-01248-4openalex-snapshot

Global genecological status of vulnerable Dalbergia latifolia: need to introspect the conservation perspectives

inferred← citeshttps://doi.org/10.1007/s44162-023-00012-zopenalex-snapshot

Use of whole genome sequencing to determine the genetic basis of visceral myopathies including Prune Belly syndrome

inferred← citeshttps://doi.org/10.1016/b978-0-323-95502-7.00251-7openalex-snapshot

A Comprehensive Step-by-Step Workflow for Biological Pathway Reconstruction and Analysis

inferred← citeshttps://doi.org/10.1016/bs.mie.2026.06.014openalex-snapshot

Evolutionary reconstruction of thiamine biosynthesis pathway: An integrative bioinformatics workflow

inferred← citeshttps://doi.org/10.1016/j.ajhg.2021.04.025openalex-snapshot

Non-coding region variants upstream of MEF2C cause severe developmental disorder through three distinct loss-of-function mechanisms

inferred← citeshttps://doi.org/10.1016/j.ajhg.2023.09.013openalex-snapshot

Power of inclusion: Enhancing polygenic prediction with admixed individuals

inferred← citeshttps://doi.org/10.1016/j.ajhg.2024.02.009openalex-snapshot

Investigating the potential of single-cell DNA methylation data to detect allele-specific methylation and imprinting

inferred← citeshttps://doi.org/10.1016/j.bbadis.2021.166291openalex-snapshot

Sequence complementarity between human noncoding RNAs and SARS-CoV-2 genes: What are the implications for human health?

inferred← citeshttps://doi.org/10.1016/j.cancergen.2022.03.001openalex-snapshot

Standardized evidence-based approach for assessment of oncogenic and clinical significance of NTRK fusions

inferred← citeshttps://doi.org/10.1016/j.cell.2021.02.002openalex-snapshot

Osteoclasts recycle via osteomorphs during RANKL-stimulated bone resorption

inferred← citeshttps://doi.org/10.1016/j.cell.2021.07.038openalex-snapshot

Deciphering osteoarthritis genetics across 826,690 individuals from 9 populations

inferred← citeshttps://doi.org/10.1016/j.cell.2021.12.018openalex-snapshot

Spatial proteogenomics reveals distinct and evolutionarily conserved hepatic macrophage niches

inferred← citeshttps://doi.org/10.1016/j.cell.2022.10.003openalex-snapshot

Architecture of the outbred brown fat proteome defines regulators of metabolic physiology

inferred← citeshttps://doi.org/10.1016/j.cell.2023.10.006openalex-snapshot

Global identification of SWI/SNF targets reveals compensation by EP400

inferred← citeshttps://doi.org/10.1016/j.celrep.2020.108485openalex-snapshot

Heterogeneous Escape from X Chromosome Inactivation Results in Sex Differences in Type I IFN Responses at the Single Human pDC Level

inferred← citeshttps://doi.org/10.1016/j.celrep.2021.108769openalex-snapshot

Chromatin dysregulation associated with NSD1 mutation in head and neck squamous cell carcinoma

inferred← citeshttps://doi.org/10.1016/j.celrep.2021.109522openalex-snapshot

The angiopoietin-Tie2 pathway regulates Purkinje cell dendritic morphogenesis in a cell-autonomous manner

inferred← citeshttps://doi.org/10.1016/j.celrep.2021.109775openalex-snapshot

Diversity and function of motile ciliated cell types within ependymal lineages of the zebrafish brain

inferred← citeshttps://doi.org/10.1016/j.celrep.2021.109807openalex-snapshot

TIGER: The gene expression regulatory variation landscape of human pancreatic islets

inferred← citeshttps://doi.org/10.1016/j.celrep.2021.110282openalex-snapshot

A bidirectional competitive interaction between circHomer1 and Homer1b within the orbitofrontal cortex regulates reversal learning

inferred← citeshttps://doi.org/10.1016/j.celrep.2025.116633openalex-snapshot

FoxP3 forms a head-to-head dimer in vivo and stabilizes its multimerization on adjacent microsatellites

inferred← citeshttps://doi.org/10.1016/j.cels.2023.03.003openalex-snapshot

A global genetic interaction network by single-cell imaging and machine learning

inferred← citeshttps://doi.org/10.1016/j.cmet.2024.04.010openalex-snapshot

Dietary intake and glutamine-serine metabolism control pathologic vascular stiffness

inferred← citeshttps://doi.org/10.1016/j.cois.2021.11.008openalex-snapshot

VectorBase.org updates: bioinformatic resources for invertebrate vectors of human pathogens and related organisms

inferred← citeshttps://doi.org/10.1016/j.crimmu.2021.12.002openalex-snapshot

Shared acute phase traits in effector and memory human CD8 T cells

inferred← citeshttps://doi.org/10.1016/j.csbj.2020.10.010openalex-snapshot

Modelling of pathogen-host systems using deeper ORF annotations and transcriptomics to inform proteomics analyses

inferred← citeshttps://doi.org/10.1016/j.csbj.2020.11.015openalex-snapshot

PDmethDB: A curated Parkinson’s disease associated methylation information database

inferred← citeshttps://doi.org/10.1016/j.csbj.2021.08.010openalex-snapshot

Predicting host dependency factors of pathogens in Drosophila melanogaster using machine learning

inferred← citeshttps://doi.org/10.1016/j.csbj.2021.12.027openalex-snapshot

Epigenomic signatures on paralogous genes reveal underappreciated universality of active histone codes adopted across animals

inferred← citeshttps://doi.org/10.1016/j.csbj.2022.04.002openalex-snapshot

m 6 A-mediated modulation coupled with transcriptional regulation shapes long noncoding RNA repertoire of the cGAS-STING signaling

inferred← citeshttps://doi.org/10.1016/j.csbj.2022.04.008openalex-snapshot

Prognostic comparative genes predict targets for sorafenib combination therapies in hepatocellular carcinoma

inferred← citeshttps://doi.org/10.1016/j.csbj.2022.05.024openalex-snapshot

MIAOME: Human microbiome affect the host epigenome

inferred← citeshttps://doi.org/10.1016/j.csbj.2022.08.050openalex-snapshot

Evolution of γ chain cytokines: Mechanisms, methods and applications

inferred← citeshttps://doi.org/10.1016/j.csbj.2023.09.029openalex-snapshot

Regulation of the three-dimensional chromatin organization by transposable elements in pig spleen

inferred← citeshttps://doi.org/10.1016/j.cub.2022.03.038openalex-snapshot

Enhanced lipogenesis through Pparγ helps cavefish adapt to food scarcity

inferred← citeshttps://doi.org/10.1016/j.devcel.2022.06.010openalex-snapshot

Genetic variation associated with condensate dysregulation in disease

inferred← citeshttps://doi.org/10.1016/j.dib.2020.106082openalex-snapshot

Dataset for homologous proteins in Drosophila melanogaster for SARS-CoV-2/human interactome

inferred← citeshttps://doi.org/10.1016/j.ebiom.2020.103030openalex-snapshot

CUP-AI-Dx: A tool for inferring cancer tissue of origin and molecular subtype using RNA gene-expression data and artificial intelligence

inferred← citeshttps://doi.org/10.1016/j.ebiom.2022.103974openalex-snapshot

MCTR3 reprograms arthritic monocytes to upregulate Arginase-1 and exert pro-resolving and tissue-protective functions in experimental arthritis

inferred← citeshttps://doi.org/10.1016/j.envpol.2021.116777openalex-snapshot

Gene alteration in zebrafish exposed to a mixture of substances of abuse

inferred← citeshttps://doi.org/10.1016/j.exer.2021.108663openalex-snapshot

The aging mouse lens transcriptome

inferred← citeshttps://doi.org/10.1016/j.exer.2021.108676openalex-snapshot

The effect of sex on the mouse lens transcriptome

inferred← citeshttps://doi.org/10.1016/j.fmre.2021.12.007openalex-snapshot

An ultra low-input method for global RNA structure probing uncovers Regnase-1-mediated regulation in macrophages

inferred← citeshttps://doi.org/10.1016/j.gastha.2021.11.002openalex-snapshot

A Machine Learning Approach to Identifying Causal Monogenic Variants in Inflammatory Bowel Disease

inferred← citeshttps://doi.org/10.1016/j.gene.2022.146242openalex-snapshot

Reconstruction of regulatory network predicts transcription factors driving the dynamics of zebrafish heart regeneration

inferred← citeshttps://doi.org/10.1016/j.genrep.2021.101050openalex-snapshot

Transcriptome analysis during early regeneration of Lumbriculus variegatus

inferred← citeshttps://doi.org/10.1016/j.genrep.2021.101214openalex-snapshot

The MAGOH paralogs - MAGOH, MAGOHB and their multiple isoforms

inferred← citeshttps://doi.org/10.1016/j.gpb.2022.05.001openalex-snapshot

RNA2Immune: A Database of Experimentally Supported Data Linking Non-Coding RNA Regulation to the Immune System

inferred← citeshttps://doi.org/10.1016/j.gpb.2023.06.002openalex-snapshot

Differential Transcriptomic Landscapes of SARS-CoV-2 Variants in Multiple Organs from Infected Rhesus Macaques

inferred← citeshttps://doi.org/10.1016/j.humimm.2021.01.008openalex-snapshot

Predictive immunogenetic markers in COVID-19

inferred← citeshttps://doi.org/10.1016/j.ijpara.2020.06.001openalex-snapshot

Development of caecaloids to study host–pathogen interactions: new insights into immunoregulatory functions of Trichuris muris extracellular vesicles in the caecum

inferred← citeshttps://doi.org/10.1016/j.isci.2021.103406openalex-snapshot

Cross-species transcriptomic signatures predict response to MK2 inhibition in mouse models of chronic inflammation

inferred← citeshttps://doi.org/10.1016/j.isci.2022.104189openalex-snapshot

Balancing selection at the human salivary agglutinin gene (DMBT1) driven by host-microbe interactions

inferred← citeshttps://doi.org/10.1016/j.isci.2022.104672openalex-snapshot

Genome-wide local ancestry and evidence for mitonuclear coadaptation in African hybrid cattle populations

inferred← citeshttps://doi.org/10.1016/j.isci.2022.105519openalex-snapshot

Implications of differential transcription start site selection on chronic myeloid leukemia and prostate cancer cell protein expression

inferred← citeshttps://doi.org/10.1016/j.isci.2022.105610openalex-snapshot

Mutation accumulation in mtDNA of cancers resembles mutagenesis in normal stem cells

inferred← citeshttps://doi.org/10.1016/j.isci.2023.106701openalex-snapshot

Using brain cell-type-specific protein interactomes to interpret neurodevelopmental genetic signals in schizophrenia

inferred← citeshttps://doi.org/10.1016/j.isci.2023.107386openalex-snapshot

The cytoplasmic fraction of the histone lysine methyltransferase Setdb1 is essential for embryonic stem cells

inferred← citeshttps://doi.org/10.1016/j.isci.2023.107574openalex-snapshot

Mobilisation of jerboa kidney gene networks during dehydration and opportunistic rehydration

inferred← citeshttps://doi.org/10.1016/j.isci.2023.108401openalex-snapshot

TRAIL-dependent apoptosis of peritoneal mesothelial cells by NK cells promotes ovarian cancer invasion

inferred← citeshttps://doi.org/10.1016/j.isci.2023.108431openalex-snapshot

Germline gene fusions across species reveal the chromosomal instability regions and cancer susceptibility

inferred← citeshttps://doi.org/10.1016/j.isci.2024.109007openalex-snapshot

Search for chromosomal instability aiding variants reveal naturally occurring kinetochore gene variants that perturb chromosome segregation

inferred← citeshttps://doi.org/10.1016/j.isci.2024.109859openalex-snapshot

Evolutionary screening of precision oncology biomarkers and its applications in prognostic model construction

inferred← citeshttps://doi.org/10.1016/j.isci.2024.110918openalex-snapshot

Copy-number dosage regulates telomere maintenance and disease-associated pathways in neuroblastoma

inferred← citeshttps://doi.org/10.1016/j.jaut.2021.102755openalex-snapshot

Adenosine-to-inosine RNA editing contributes to type I interferon responses in systemic sclerosis

inferred← citeshttps://doi.org/10.1016/j.jbc.2021.100937openalex-snapshot

Nodal modulator (NOMO) is required to sustain endoplasmic reticulum morphology

inferred← citeshttps://doi.org/10.1016/j.jbi.2022.104057openalex-snapshot

Identifying the oncogenic potential of gene fusions exploiting miRNAs

inferred← citeshttps://doi.org/10.1016/j.jgg.2021.01.007openalex-snapshot

Pathway analysis for genome-wide genetic variation data: Analytic principles, latest developments, and new opportunities

inferred← citeshttps://doi.org/10.1016/j.jmb.2022.167529openalex-snapshot

Missense Variants Reveal Functional Insights Into the Human ARID Family of Gene Regulators

inferred← citeshttps://doi.org/10.1016/j.mcn.2021.103681openalex-snapshot

Olfactory receptor coding sequences cause silencing of episomal constructs in multiple cell lines

inferred← citeshttps://doi.org/10.1016/j.mcpro.2022.100281openalex-snapshot

Functional Diversity and Evolution of the Drosophila Sperm Proteome

inferred← citeshttps://doi.org/10.1016/j.mcpro.2024.100735openalex-snapshot

Proximity Mapping of Desmosomes Reveals a Striking Shift in Their Molecular Neighborhood Associated With Maturation

inferred← citeshttps://doi.org/10.1016/j.meegid.2021.104888openalex-snapshot

Disparities in COVID-19 severities and casualties across ethnic groups around the globe and patterns of ACE2 and PIR variants

inferred← citeshttps://doi.org/10.1016/j.molcel.2021.11.027openalex-snapshot

Circular DNA in the human germline and its association with recombination

inferred← citeshttps://doi.org/10.1016/j.molcel.2022.01.024openalex-snapshot

The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation

inferred← citeshttps://doi.org/10.1016/j.molcel.2022.07.017openalex-snapshot

Increasing cell size remodels the proteome and promotes senescence

inferred← citeshttps://doi.org/10.1016/j.molmed.2020.12.008openalex-snapshot

Strategies to Identify Genetic Variants Causing Infertility

inferred← citeshttps://doi.org/10.1016/j.nbd.2022.105873openalex-snapshot

Differential regulation of gene expression pathways with dexamethasone and ACTH after early life seizures

inferred← citeshttps://doi.org/10.1016/j.neo.2022.100858openalex-snapshot

Proteomic profiling of canine fibrosarcoma and adjacent peritumoral tissue

inferred← citeshttps://doi.org/10.1016/j.neo.2024.101104openalex-snapshot

Transcriptomic and proteomic profiling identifies feline fibrosarcoma as clinically amenable model for aggressive sarcoma subtypes

inferred← citeshttps://doi.org/10.1016/j.neurobiolaging.2021.03.006openalex-snapshot

Assessment of ANG variants in Parkinson's disease

inferred← citeshttps://doi.org/10.1016/j.ocarto.2022.100237openalex-snapshot

Osteoarthritis Data Integration Portal (OsteoDIP): A web-based gene and non-coding RNA expression database

inferred← citeshttps://doi.org/10.1016/j.omtn.2023.102057openalex-snapshot

Efficacy and safety of a SOD1-targeting artificial miRNA delivered by AAV9 in mice are impacted by miRNA scaffold selection

inferred← citeshttps://doi.org/10.1016/j.prp.2025.156280openalex-snapshot

Next generation DNA sequencing data analysis and its application in clinical genomics

inferred← citeshttps://doi.org/10.1016/j.radonc.2021.10.020openalex-snapshot

Genetic variants associated with mandibular osteoradionecrosis following radiotherapy for head and neck malignancy

inferred← citeshttps://doi.org/10.1016/j.rhisph.2021.100413openalex-snapshot

Root characteristics of an elite spring wheat panel under contrasting water treatments and their genome-wide association study

inferred← citeshttps://doi.org/10.1016/j.semcdb.2021.05.020openalex-snapshot

MicroRNA-1: Diverse role of a small player in multiple cancers

inferred← citeshttps://doi.org/10.1016/j.stem.2023.09.003openalex-snapshot

Tissue morphology influences the temporal program of human brain organoid development

inferred← citeshttps://doi.org/10.1016/j.trsl.2023.12.004openalex-snapshot

Chronic kidney disease and left ventricular diastolic dysfunction (CKD-LVDD) alter cardiac expression of mitochondria-related genes in swine

inferred← citeshttps://doi.org/10.1016/j.xcrm.2021.100473openalex-snapshot

TGF-β1 potentiates Vγ9Vδ2 T cell adoptive immunotherapy of cancer

inferred← citeshttps://doi.org/10.1016/j.xcrm.2022.100754openalex-snapshot

Single-cell spatial transcriptomics reveals a dynamic control of metabolic zonation and liver regeneration by endothelial cell Wnt2 and Wnt9b

inferred← citeshttps://doi.org/10.1016/j.xgen.2022.100112openalex-snapshot

Unscrambling cancer genomes via integrated analysis of structural variation and copy number

inferred← citeshttps://doi.org/10.1016/j.xgen.2022.100250openalex-snapshot

Protein interaction studies in human induced neurons indicate convergent biology underlying autism spectrum disorders

inferred← citeshttps://doi.org/10.1016/j.xgen.2023.100389openalex-snapshot

Comprehensive single-cell genome analysis at nucleotide resolution using the PTA Analysis Toolbox

inferred← citeshttps://doi.org/10.1016/j.xhgg.2022.100125openalex-snapshot

Prevalence, parameters, and pathogenic mechanisms for splice-altering acceptor variants that disrupt the AG exclusion zone

inferred← citeshttps://doi.org/10.1016/j.xplc.2022.100304openalex-snapshot

Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae

inferred← citeshttps://doi.org/10.1016/j.xpro.2021.100450openalex-snapshot

Processing single-cell RNA-seq data for dimension reduction-based analyses using open-source tools

inferred← citeshttps://doi.org/10.1016/j.xpro.2021.100486openalex-snapshot

Rapid and inexpensive preparation of genome-wide nucleosome footprints from model and non-model organisms

inferred← citeshttps://doi.org/10.1016/j.xpro.2021.100641openalex-snapshot

Assessment of escape from X chromosome inactivation and gene expression in single human immune cells

inferred← citeshttps://doi.org/10.1016/j.ygcen.2021.113894openalex-snapshot

The stress response in Atlantic salmon (Salmo salar L.): identification and functional characterization of the corticotropin-releasing factor (crf) paralogs

inferred← citeshttps://doi.org/10.1016/j.yhbeh.2020.104850openalex-snapshot

Inside the supergene of the bird with four sexes

inferred← citeshttps://doi.org/10.1016/j.yjmcc.2021.07.002openalex-snapshot

Early adaptive chromatin remodeling events precede pathologic phenotypes and are reinforced in the failing heart

inferred← citeshttps://doi.org/10.1016/j.ymeth.2020.10.011openalex-snapshot

High-throughput genotyping of high-homology mutant mouse strains by next-generation sequencing

inferred← citeshttps://doi.org/10.1016/j.ymeth.2021.04.001openalex-snapshot

Droplet digital PCR or quantitative PCR for in-depth genomic and functional validation of genetically altered rodents

inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108406openalex-snapshot

Museomics reveals the phylogenetic position of an enigmatic vertebrate family (Lophiiformes: Lophichthyidae)

inferred← citeshttps://doi.org/10.1021/acs.jproteome.0c00348openalex-snapshot

Studying the Effects of ACE2 Mutations on the Stability, Dynamics, and Dissociation Process of SARS-CoV‑2 S1/hACE2 Complexes

inferred← citeshttps://doi.org/10.1021/acs.jproteome.3c00491openalex-snapshot

Proteogenomics Reveal the Overexpression of HLA-I in Cancer

inferred← citeshttps://doi.org/10.1021/acs.langmuir.2c00200openalex-snapshot

Nanoparticle Properties Influence Transendothelial Migration of Monocytes

inferred← citeshttps://doi.org/10.1021/acscentsci.1c00273openalex-snapshot

State-of-the-Art Biocatalysis

inferred← citeshttps://doi.org/10.1021/acsnano.1c04510openalex-snapshot

Specific Endothelial Cells Govern Nanoparticle Entry into Solid Tumors

inferred← citeshttps://doi.org/10.1021/jacsau.3c00263openalex-snapshot

Enabling Broader Adoption of Biocatalysis in Organic Chemistry

inferred← citeshttps://doi.org/10.1038/s12276-022-00891-0openalex-snapshot

SCON—a Short Conditional intrON for conditional knockout with one-step zygote injection

inferred← citeshttps://doi.org/10.1038/s41366-025-01898-zopenalex-snapshot

Integrating genetic and transcriptomic data to identify genes underlying obesity risk loci

inferred← citeshttps://doi.org/10.1038/s41380-020-00944-8openalex-snapshot

Neurexins in autism and schizophrenia—a review of patient mutations, mouse models and potential future directions

inferred← citeshttps://doi.org/10.1038/s41380-021-01274-zopenalex-snapshot

TCF7L2 lncRNA: a link between bipolar disorder and body mass index through glucocorticoid signaling

inferred← citeshttps://doi.org/10.1038/s41385-022-00494-yopenalex-snapshot

Epithelial GPR35 protects from Citrobacter rodentium infection by preserving goblet cells and mucosal barrier integrity

inferred← citeshttps://doi.org/10.1038/s41388-024-02973-xopenalex-snapshot

Cancer-associated fibroblasts rewire the estrogen receptor response in luminal breast cancer, enabling estrogen independence

inferred← citeshttps://doi.org/10.1038/s41398-021-01713-zopenalex-snapshot

Drinking and smoking polygenic risk is associated with childhood and early-adulthood psychiatric and behavioral traits independently of substance use and psychiatric genetic risk

inferred← citeshttps://doi.org/10.1038/s41416-021-01420-yopenalex-snapshot

Targeting the actin/tropomyosin cytoskeleton in epithelial ovarian cancer reveals multiple mechanisms of synergy with anti-microtubule agents

inferred← citeshttps://doi.org/10.1038/s41418-021-00837-5openalex-snapshot

A CVID-associated variant in the ciliogenesis protein CCDC28B disrupts immune synapse assembly

inferred← citeshttps://doi.org/10.1038/s41419-024-06774-8openalex-snapshot

Obesity-driven mitochondrial dysfunction in human adipose tissue-derived mesenchymal stem/stromal cells involves epigenetic changes

inferred← citeshttps://doi.org/10.1038/s41420-022-01133-yopenalex-snapshot

CD95 gene deletion may reduce clonogenic growth and invasiveness of human glioblastoma cells in a CD95 ligand-independent manner

inferred← citeshttps://doi.org/10.1038/s41439-021-00146-wopenalex-snapshot

Genetic variability in COVID-19-related genes in the Brazilian population

inferred← citeshttps://doi.org/10.1038/s41467-020-18970-zopenalex-snapshot

Structural basis of heterotetrameric assembly and disease mutations in the human cis-prenyltransferase complex

inferred← citeshttps://doi.org/10.1038/s41467-020-19942-zopenalex-snapshot

Towards a unified open access dataset of molecular interactions

inferred← citeshttps://doi.org/10.1038/s41467-020-20343-5openalex-snapshot

A spatially resolved brain region- and cell type-specific isoform atlas of the postnatal mouse brain

inferred← citeshttps://doi.org/10.1038/s41467-021-21733-zopenalex-snapshot

A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution

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