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Evaluation of ITS2-28S as a molecular marker for identification of calanoid copepods in the subtropical western North Pacific

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/978-94-017-1347-4_1openalex-snapshot

How many copepods?

inferredcites →https://doi.org/10.1007/bf00229916openalex-snapshot

How many copepods?

inferredcites →https://doi.org/10.1007/bf00349301openalex-snapshot

Molecular systematics of six Calanus and three Metridia species (Calanoida: Copepoda)

inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot

A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences

inferredcites →https://doi.org/10.1007/pl00021689openalex-snapshot

Rapid Identification of Adult and Naupliar Stages of Copepods Using DNA Hybridization Methodology

inferredcites →https://doi.org/10.1007/s00227-002-0943-1openalex-snapshot

Molecular systematic and phylogenetic assessment of 34 calanoid copepod species of the Calanidae and Clausocalanidae

inferredcites →https://doi.org/10.1007/s00227-005-0093-3openalex-snapshot

Spatio-temporal changes in diversity and community structure of planktonic copepods in Sagami Bay, Japan

inferredcites →https://doi.org/10.1007/s002270050445openalex-snapshot

Mitochondrial and nuclear rRNA based copepod phylogeny with emphasis on the Euchaetidae (Calanoida)

inferredcites →https://doi.org/10.1007/s00436-007-0764-8openalex-snapshot

Phylogeny of freshwater parasitic copepods in the Ergasilidae (Copepoda: Poecilostomatoida) based on 18S and 28S rDNA sequences

inferredcites →https://doi.org/10.1007/s10750-008-9666-8openalex-snapshot

Phylogeny of the genus Hesperodiaptomus (Copepoda) based on nucleotide sequence data of the nuclear ribosomal gene

inferredcites →https://doi.org/10.1007/s10750-010-0094-1openalex-snapshot

Comparison of morphological and molecular traits for species identification and taxonomic grouping of oncaeid copepods

inferredcites →https://doi.org/10.1016/b978-0-12-327645-2.x5000-2openalex-snapshot

ICES Zooplankton Methodology Manual

inferredcites →https://doi.org/10.1016/b978-012327645-2/50012-8openalex-snapshot

Methods for population genetic analysis of zooplankton

inferredcites →https://doi.org/10.1016/j.dsr2.2010.09.010openalex-snapshot

Copepod abundance and species composition in the Eastern subtropical/tropical Atlantic

inferredcites →https://doi.org/10.1016/j.exppara.2009.08.017openalex-snapshot

Cytochrome oxidase I sequences reveal possible cryptic diversity in the cosmopolitan symbiotic copepod Nesippus orientalis Heller, 1868 (Pandaridae: Siphonostomatoida) on elasmobranch hosts from the KwaZulu-Natal coast of South Africa

inferredcites →https://doi.org/10.1016/j.jembe.2006.12.016openalex-snapshot

RFLP procedure to discriminate between Clausocalanus Giesbrecht, 1888 (Copepoda, Calanoida) species in the Central Cantabrian Sea

inferredcites →https://doi.org/10.1016/j.pocean.2008.02.001openalex-snapshot

Stage-V copepodites of Calanus sinicus and Calanus jashnovi (Copepoda: Calanoida) in mesopelagic zone of Sagami Bay as identified with genetic markers, with special reference to their vertical distribution

inferredcites →https://doi.org/10.1016/j.ympev.2009.12.008openalex-snapshot

The evolutionary diversification of the Centropagidae (Crustacea, Calanoida): A history of habitat shifts

inferredcites →https://doi.org/10.1016/j.ympev.2010.02.029openalex-snapshot

Phylogeny of the freshwater copepod Mesocyclops (Crustacea: Cyclopidae) based on combined molecular and morphological data, with notes on biogeography

inferredcites →https://doi.org/10.1016/j.ympev.2011.01.008openalex-snapshot

Molecular phylogeny of the Calanoida (Crustacea: Copepoda)

inferredcites →https://doi.org/10.1016/s0065-2881(08)x6020-1openalex-snapshot

The Biology of Calanoid Copepods

inferredcites →https://doi.org/10.1016/s0967-0637(00)00015-7openalex-snapshot

Zooplankton distribution across the Lomonosov Ridge, Arctic Ocean: species inventory, biomass and vertical structure

inferredcites →https://doi.org/10.1038/nature09329openalex-snapshot

Global patterns and predictors of marine biodiversity across taxa

inferredcites →https://doi.org/10.1086/419073openalex-snapshot

Concerted Evolution of Repetitive DNA Sequences in Eukaryotes

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/genetics/121.3.613openalex-snapshot

Organelle gene diversity under migration, mutation, and drift: equilibrium expectations, approach to equilibrium, effects of heteroplasmic cells, and comparison to nuclear genes.

inferredcites →https://doi.org/10.1093/icb/icr104openalex-snapshot

Population Differentiation in the Open Sea: Insights from the Pelagic Copepod Pleuromamma xiphias

inferredcites →https://doi.org/10.1093/molbev/msp259openalex-snapshot

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

inferredcites →https://doi.org/10.1093/molbev/msr121openalex-snapshot

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

inferredcites →https://doi.org/10.1093/nar/12.8.3563openalex-snapshot

The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA In higher eukaryotes

inferredcites →https://doi.org/10.1093/nar/25.24.4876openalex-snapshot

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

inferredcites →https://doi.org/10.1093/plankt/fbi115openalex-snapshot

Integrating conventional microscopy and molecular analysis to analyse the abundance and distribution of four Calanus congeners in the North Atlantic

inferredcites →https://doi.org/10.1093/plankt/fbq165openalex-snapshot

DNA extraction, amplification and analysis of the 28S rRNA portion in sediment-buried copepod DNA in the Great Wall Bay and Xihu Lake, Antarctica

inferredcites →https://doi.org/10.1098/rspb.2003.2505openalex-snapshot

Cryptic speciation on the high seas; global phylogenetics of the copepod family Eucalanidae

inferredcites →https://doi.org/10.1098/rspb.2009.0742openalex-snapshot

Global latitudinal variations in marine copepod diversity and environmental factors

inferredcites →https://doi.org/10.1111/j.0014-3820.2000.tb01245.xopenalex-snapshot

GLOBAL PHYLOGEOGRAPHY OF A CRYPTIC COPEPOD SPECIES COMPLEX AND REPRODUCTIVE ISOLATION BETWEEN GENETICALLY PROXIMATE "POPULATIONS"

inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04520.xopenalex-snapshot

Species discovery in marine planktonic invertebrates through global molecular screening

inferredcites →https://doi.org/10.1146/annurev.bi.49.070180.003455openalex-snapshot

Repeated Genes in Eukaryotes

inferredcites →https://doi.org/10.1146/annurev.es.18.110187.002421openalex-snapshot

INTRASPECIFIC PHYLOGEOGRAPHY: The Mitochondrial DNA Bridge Between Population Genetics and Systematics

inferredcites →https://doi.org/10.1186/1471-2164-12-73openalex-snapshot

Distinctive mitochondrial genome of Calanoid copepod Calanus sinicus with multiple large non-coding regions and reshuffled gene order: Useful molecular markers for phylogenetic and population studies

inferredcites →https://doi.org/10.1186/1742-9994-4-6openalex-snapshot

An evaluation of LSU rDNA D1-D2 sequences for their use in species identification

inferredcites →https://doi.org/10.1357/0022240963213385openalex-snapshot

Molecular diversity of the copepod, Nannocalanus minor: Genetic evidence of species and population structure in the North Atlantic Ocean

inferredcites →https://doi.org/10.1371/journal.pone.0010278openalex-snapshot

Dissimilarity of Species and Forms of Planktonic Neocalanus Copepods Using Mitochondrial COI, 12S, Nuclear ITS, and 28S Gene Sequences

inferredcites →https://doi.org/10.1371/journal.pone.0035861openalex-snapshot

Molecular Systematic of Three Species of Oithona (Copepoda, Cyclopoida) from the Atlantic Ocean: Comparative Analysis Using 28S rDNA

inferredcites →https://doi.org/10.3354/meps236189openalex-snapshot

Large-scale patterns in diversity and community structure of surface water copepods from the Atlantic Ocean

inferredcites →https://doi.org/10.4319/lo.2010.55.5.2219openalex-snapshot

A multivariate approach to large‐scale variation in marine planktonic copepod diversity and its environmental correlates

inferredcites →https://doi.org/10.5281/zenodo.15145663openalex-snapshot

Table 1 in A new Gammarus species from Xinjiang Uygur Autonomous Region (China) with a key to Xinjiang freshwater gammarids (Crustacea, Amphipoda, Gammaridae)

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5281/zenodo.293480zenodo-depositor-declared

Revision of Family Megacalanidae (Copepoda: Calanoida)

inferred← citeshttps://doi.org/10.1002/ece3.3742openalex-snapshot

Improved protocols to accelerate the assembly of DNA barcode reference libraries for freshwater zooplankton

inferred← citeshttps://doi.org/10.1007/978-4-431-56432-4_22openalex-snapshot

Copepod Biodiversity in Japan: Recent Advances in Japanese Copepodology

inferred← citeshttps://doi.org/10.1007/s00227-019-3618-xopenalex-snapshot

Insights into reproductive isolation within the pelagic copepod Pleuromamma abdominalis with high genetic diversity using genome-wide SNP data

inferred← citeshttps://doi.org/10.1007/s12526-018-0902-9openalex-snapshot

Using internal transcribed spacers for Calanoida (Crustacea, Copepoda) species identification

inferred← citeshttps://doi.org/10.1007/s12686-020-01129-9openalex-snapshot

Non-destructive genome skimming for aquatic copepods

inferred← citeshttps://doi.org/10.1016/j.ecolind.2023.110126openalex-snapshot

Aquatic invertebrate diversity profiling in heterogeneous wetland habitats by environmental DNA metabarcoding

inferred← citeshttps://doi.org/10.1016/j.fishres.2018.09.012openalex-snapshot

Morphological and genetic identification of Pennella instructa (Copepoda: Pennellidae) on Atlantic swordfish (Xiphias gladius, L. 1758)

inferred← citeshttps://doi.org/10.1016/j.jhydrol.2023.129692openalex-snapshot

Community structure of zooplankton and its response to aquatic environmental changes based on eDNA metabarcoding

inferred← citeshttps://doi.org/10.1016/j.marenvres.2020.104946openalex-snapshot

DNA metabarcoding and morphological analysis - Assessment of zooplankton biodiversity in transitional waters

inferred← citeshttps://doi.org/10.1016/j.marenvres.2021.105444openalex-snapshot

Suitability of a dual COI marker for marine zooplankton DNA metabarcoding

inferred← citeshttps://doi.org/10.1016/j.marenvres.2026.108038openalex-snapshot

Hidden diversity of marine zooplankton under sea ice in the Okhotsk Sea: Insights from community and population analyses based on DNA metabarcoding

inferred← citeshttps://doi.org/10.1016/j.pocean.2015.09.002openalex-snapshot

Extensive genetic diversity and endemism across the global range of the oceanic copepod Pleuromamma abdominalis

inferred← citeshttps://doi.org/10.1016/j.seares.2025.102581openalex-snapshot

Evaluation of the applicability of 28S rRNA and COI genes in the molecular identification of planktonic copepods from the Northwest Pacific

inferred← citeshttps://doi.org/10.1016/j.ympev.2018.10.004openalex-snapshot

Unraveling the intricate biodiversity of the benthic harpacticoid genus Nannopus (Copepoda, Harpacticoida, Nannopodidae) in Korean waters

inferred← citeshttps://doi.org/10.1038/s41598-017-01808-yopenalex-snapshot

Zooplankton Community Profiling in a Eutrophic Freshwater Ecosystem-Lake Tai Basin by DNA Metabarcoding

inferred← citeshttps://doi.org/10.1080/11250003.2016.1276639openalex-snapshot

ITS2 in calanoid copepods: reconstructing phylogenetic relationships and identifying a newly introduced species in the Mediterranean

inferred← citeshttps://doi.org/10.1080/23802359.2021.1878951openalex-snapshot

A new set of highly efficient primers for COI amplification in rotifers

inferred← citeshttps://doi.org/10.1093/plankt/fbac020openalex-snapshot

Molecular and morphological analyses to improve taxonomic classification ofMetridia lucens/pacificain the North Pacific

inferred← citeshttps://doi.org/10.1093/plankt/fbu105openalex-snapshot

Non-destructive DNA extraction for small pelagic copepods to perform integrative taxonomy

inferred← citeshttps://doi.org/10.1093/plankt/fbw023openalex-snapshot

Metabarcoding of marine zooplankton: prospects, progress and pitfalls

inferred← citeshttps://doi.org/10.1093/plankt/fbx031openalex-snapshot

Unravelling diversity of deep-sea copepods using integrated morphological and molecular techniques

inferred← citeshttps://doi.org/10.1098/rstb.2019.0446openalex-snapshot

The crossover from microscopy to genes in marine diversity: from species to assemblages in marine pelagic copepods

inferred← citeshttps://doi.org/10.1111/1755-0998.12294openalex-snapshot

A metagenetic approach for revealing community structure of marine planktonic copepods

inferred← citeshttps://doi.org/10.1111/1755-0998.12459openalex-snapshot

Comparative study of the validity of three regions of the 18S‐ rRNA gene for massively parallel sequencing‐based monitoring of the planktonic eukaryote community

inferred← citeshttps://doi.org/10.1111/ecog.05690openalex-snapshot

Niche conservation in copepods between ocean basins

inferred← citeshttps://doi.org/10.1111/maec.12667openalex-snapshot

Higher population genetic diversity within the algal symbiontDurusdiniuminPocillopora verrucosafrom Mexican Pacific reefs correlates with higher resistance to bleaching after the El Niño 2015–16 event

inferred← citeshttps://doi.org/10.1111/mec.12950openalex-snapshot

Multilocus evidence for globally distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod

inferred← citeshttps://doi.org/10.1155/2014/926342openalex-snapshot

Phylogenetic Information Content of Copepoda Ribosomal DNA Repeat Units: ITS1 and ITS2 Impact

inferred← citeshttps://doi.org/10.11646/zootaxa.4229.1.1openalex-snapshot

Revision of Family Megacalanidae (Copepoda: Calanoida)

inferred← citeshttps://doi.org/10.1186/s12864-024-10767-4openalex-snapshot

Primed and ready: nanopore metabarcoding can now recover highly accurate consensus barcodes that are generally indel-free

inferred← citeshttps://doi.org/10.1371/currents.tol.cdf8b74881f87e3b01d56b43791626d2openalex-snapshot

DNA Barcoding of Marine Copepods: Assessment of Analytical Approaches to Species Identification

inferred← citeshttps://doi.org/10.1371/journal.pone.0181452openalex-snapshot

Evaluation of metagenetic community analysis of planktonic copepods using Illumina MiSeq: Comparisons with morphological classification and metagenetic analysis using Roche 454

inferred← citeshttps://doi.org/10.3389/fenvs.2023.1057653openalex-snapshot

Relevance of DNA barcodes for biomonitoring of freshwater animals

inferred← citeshttps://doi.org/10.3389/fmars.2025.1509743openalex-snapshot

Diversity and seasonal variation of zooplankton community in a large deep-water reservoir of Eastern China using eDNA and morphological methods

inferred← citeshttps://doi.org/10.3390/d13070306openalex-snapshot

Aquatic Organisms Research with DNA Barcodes

inferred← citeshttps://doi.org/10.3390/microorganisms11051146openalex-snapshot

Haplosporidium pinnae Parasite Detection in Seawater Samples

inferred← citeshttps://doi.org/10.3800/pbr.17.349openalex-snapshot

Effectiveness of Lugol’s iodine solution for long-term preservation of zooplankton samples for molecular analysis

inferred← citeshttps://doi.org/10.4194/2459-1831-v2_1_03openalex-snapshot

inferred← citeshttps://doi.org/10.5928/kaiyou.30.1_1openalex-snapshot

Molecular-based approach for revealing community struc ture and diversity of marine zooplankton

inferred← citeshttps://doi.org/10.6084/m9.figshare.26974494openalex-snapshot

Additional file 1 of Primed and ready: nanopore metabarcoding can now recover highly accurate consensus barcodes that are generally indel-free

inferred← citeshttps://doi.org/10.6084/m9.figshare.26974497openalex-snapshot

Additional file 2 of Primed and ready: nanopore metabarcoding can now recover highly accurate consensus barcodes that are generally indel-free

inferred← citeshttps://doi.org/10.6084/m9.figshare.26974500openalex-snapshot

Additional file 3 of Primed and ready: nanopore metabarcoding can now recover highly accurate consensus barcodes that are generally indel-free

inferred← citeshttps://doi.org/10.6084/m9.figshare.26974503openalex-snapshot

Additional file 4 of Primed and ready: nanopore metabarcoding can now recover highly accurate consensus barcodes that are generally indel-free

inferred← citeshttps://doi.org/10.6084/m9.figshare.26974506openalex-snapshot

Additional file 5 of Primed and ready: nanopore metabarcoding can now recover highly accurate consensus barcodes that are generally indel-free

inferred← citeshttps://doi.org/10.7287/peerj.12034v0.1/reviews/1openalex-snapshot

Peer Review #1 of "A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.12034v0.1/reviews/2openalex-snapshot

Peer Review #2 of "A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.12034v0.1/reviews/3openalex-snapshot

Peer Review #3 of "A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.12034v0.2/reviews/1openalex-snapshot

Peer Review #1 of "A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.12034v0.2/reviews/2openalex-snapshot

Peer Review #2 of "A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.12034v0.2/reviews/3openalex-snapshot

Peer Review #3 of "A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.15427v0.1/reviews/1openalex-snapshot

Peer Review #1 of "Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequences (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.15427v0.1/reviews/2openalex-snapshot

Peer Review #2 of "Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequences (v0.1)"

inferred← citeshttps://doi.org/10.7287/peerj.15427v0.2/reviews/1openalex-snapshot

Peer Review #1 of "Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequences (v0.2)"

inferred← citeshttps://doi.org/10.7287/peerj.15427v0.2/reviews/2openalex-snapshot

Peer Review #2 of "Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequences (v0.2)"

inferred← citeshttps://doi.org/10.7717/peerj.10153openalex-snapshot

Pseudodiaptomus marinus Sato, 1913 in the Black Sea: morphology, genetic analysis, and variability in seasonal and interannual abundance

inferred← citeshttps://doi.org/10.7717/peerj.12034openalex-snapshot

A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism

inferred← citeshttps://doi.org/10.7717/peerj.15427openalex-snapshot

Improving taxonomic classification of marine zooplankton by molecular approach: registration of taxonomically verified 18S and 28S rRNA gene sequences

inferred← citeshttps://doi.org/10.7717/peerj.19054openalex-snapshot

Optimal input DNA thresholds for genome skimming in marine crustacean zooplankton

inferred← citeshttps://doi.org/10.7717/peerj.20989openalex-snapshot

DNA barcoding of North American freshwater copepods (Diaptomidae and Cyclopoida): an overview after 20 years with emphasis in the Mexican fauna, the transition between the Nearctic and Neotropics

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