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Spatiotemporal dynamics of the tomato fruit transcriptome under prolonged water stress

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Advances of Metabolite Profiling of Plants in Challenging Environments

inferredcites →https://doi.org/10.1002/fsn3.2160openalex-snapshot

Effects of water deficit on leaves and fruit quality during the development period in tomato plant

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Genotype by watering regime interaction in cultivated tomato: lessons from linkage mapping and gene expression

inferredcites →https://doi.org/10.1007/s10535-016-0700-9openalex-snapshot

Molecular responses to drought stress in plants

inferredcites →https://doi.org/10.1007/s13205-020-02206-4openalex-snapshot

Impact of drought and heat stress individually and in combination on physio-biochemical parameters, antioxidant responses, and gene expression in Solanum lycopersicum

inferredcites →https://doi.org/10.1016/j.copbio.2010.03.002openalex-snapshot

More from less: plant growth under limited water

inferredcites →https://doi.org/10.1016/j.foodchem.2019.05.118openalex-snapshot

A relationship between tomato fruit softening, cuticle properties and water availability

inferredcites →https://doi.org/10.1016/j.gene.2012.02.009openalex-snapshot

Genome-wide identification of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families and their expression analyses in response to viral infection and abiotic stresses in Solanum lycopersicum

inferredcites →https://doi.org/10.1016/j.molp.2014.11.006openalex-snapshot

Regulation of Carotenoid Metabolism in Tomato

inferredcites →https://doi.org/10.1016/j.plantsci.2008.03.021openalex-snapshot

Molecular biology of ethylene during tomato fruit development and maturation

inferredcites →https://doi.org/10.1016/j.plaphy.2013.05.002openalex-snapshot

Expression of rd29A::AtDREB1A/CBF3 in tomato alleviates drought-induced oxidative stress by regulating key enzymatic and non-enzymatic antioxidants

inferredcites →https://doi.org/10.1016/j.plaphy.2019.03.031openalex-snapshot

The R2R3-MYB transcription factor MdMYB24-like is involved in methyl jasmonate-induced anthocyanin biosynthesis in apple

inferredcites →https://doi.org/10.1016/j.plaphy.2021.12.026openalex-snapshot

Plant non-specific lipid transfer proteins: An overview

inferredcites →https://doi.org/10.1016/j.scienta.2019.01.045openalex-snapshot

The physiological responses of tomato to water stress and re-water in different growth periods

inferredcites →https://doi.org/10.1016/j.tplants.2015.02.001openalex-snapshot

Diverse roles of jasmonates and ethylene in abiotic stress tolerance

inferredcites →https://doi.org/10.1016/j.tplants.2018.04.002openalex-snapshot

Molecular Regulation of CBF Signaling in Cold Acclimation

inferredcites →https://doi.org/10.1016/j.tplants.2018.12.003openalex-snapshot

MYB Repressors as Regulators of Phenylpropanoid Metabolism in Plants

inferredcites →https://doi.org/10.1021/jf990974eopenalex-snapshot

Correlation of Lycopene Measured by HPLC with the L *, a *, b * Color Readings of a Hydroponic Tomato and the Relationship of Maturity with Color and Lycopene Content

inferredcites →https://doi.org/10.1038/nbt.1800openalex-snapshot

Survival and growth of Arabidopsis plants given limited water are not equal

inferredcites →https://doi.org/10.1038/nmeth.3317openalex-snapshot

HISAT: a fast spliced aligner with low memory requirements

inferredcites →https://doi.org/10.1038/s41467-017-02782-9openalex-snapshot

High-resolution spatiotemporal transcriptome mapping of tomato fruit development and ripening

inferredcites →https://doi.org/10.1038/s41558-020-00972-wopenalex-snapshot

Global terrestrial water storage and drought severity under climate change

inferredcites →https://doi.org/10.1038/s41576-021-00413-0openalex-snapshot

Abiotic stress responses in plants

inferredcites →https://doi.org/10.1038/s41598-017-06929-yopenalex-snapshot

A systems approach to a spatio-temporal understanding of the drought stress response in maize

inferredcites →https://doi.org/10.1038/s41598-021-83074-7openalex-snapshot

Small RNAs and their targets are associated with the transgenerational effects of water-deficit stress in durum wheat

inferredcites →https://doi.org/10.1073/pnas.1103202108openalex-snapshot

Cis -regulatory code of stress-responsive transcription in Arabidopsis thaliana

inferredcites →https://doi.org/10.1073/pnas.1600399113openalex-snapshot

Arabidopsis type B cytokinin response regulators ARR1, ARR10, and ARR12 negatively regulate plant responses to drought

inferredcites →https://doi.org/10.1073/pnas.1811828115openalex-snapshot

JAZ repressors of metabolic defense promote growth and reproductive fitness in Arabidopsis

inferredcites →https://doi.org/10.1074/jbc.273.46.30651openalex-snapshot

Induction and Control of Chromoplast-specific Carotenoid Genes by Oxidative Stress

inferredcites →https://doi.org/10.1080/15592324.2016.1215794openalex-snapshot

The broad roles of CBF genes: From development to abiotic stress

inferredcites →https://doi.org/10.1089/omi.2011.0118openalex-snapshot

clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

inferredcites →https://doi.org/10.1093/aob/mcn125openalex-snapshot

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

inferredcites →https://doi.org/10.1093/bioinformatics/btp616openalex-snapshot

edgeR : a Bioconductor package for differential expression analysis of digital gene expression data

inferredcites →https://doi.org/10.1093/bioinformatics/btu170openalex-snapshot

Trimmomatic: a flexible trimmer for Illumina sequence data

inferredcites →https://doi.org/10.1093/bioinformatics/btx190openalex-snapshot

The Tomato Expression Atlas

inferredcites →https://doi.org/10.1093/jexbot/52.360.1401openalex-snapshot

Water deficit inhibits cell division and expression of transcripts involved in cell proliferation and endoreduplication in maize endosperm

inferredcites →https://doi.org/10.1093/jxb/eraa089openalex-snapshot

Molecular genetic analyses of abiotic stress responses during plant reproductive development

inferredcites →https://doi.org/10.1093/jxb/erab156openalex-snapshot

Involvement of the R2R3-MYB transcription factor MYB21 and its homologs in regulating flavonol accumulation in Arabidopsis stamen

inferredcites →https://doi.org/10.1093/jxb/erab276openalex-snapshot

Rewilding crops for climate resilience: economic analysis and de novo domestication strategies

inferredcites →https://doi.org/10.1093/jxb/erp333openalex-snapshot

Salinity induces carbohydrate accumulation and sugar-regulated starch biosynthetic genes in tomato (Solanum lycopersicum L. cv. ‘Micro-Tom’) fruits in an ABA- and osmotic stress-independent manner

inferredcites →https://doi.org/10.1093/jxb/erq167openalex-snapshot

Transcriptional profiles of drought-responsive genes in modulating transcription signal transduction, and biochemical pathways in tomato

inferredcites →https://doi.org/10.1093/jxb/erq194openalex-snapshot

Mining the surface proteome of tomato (Solanum lycopersicum) fruit for proteins associated with cuticle biogenesis

inferredcites →https://doi.org/10.1093/jxb/erq228openalex-snapshot

A multifaceted study of stigma/style cysteine-rich adhesin (SCA)-like Arabidopsis lipid transfer proteins (LTPs) suggests diversified roles for these LTPs in plant growth and reproduction

inferredcites →https://doi.org/10.1093/jxb/eru197openalex-snapshot

Water shortage and quality of fleshy fruits—making the most of the unavoidable

inferredcites →https://doi.org/10.1093/jxb/eru301openalex-snapshot

There's more than one way to skin a fruit: formation and functions of fruit cuticles

inferredcites →https://doi.org/10.1093/jxb/eru349openalex-snapshot

Molecular basis for jasmonate and ethylene signal interactions in Arabidopsis

inferredcites →https://doi.org/10.1093/jxb/erv313openalex-snapshot

Non-specific lipid transfer proteins in plants: presenting new advances and an integrated functional analysis

inferredcites →https://doi.org/10.1093/jxb/ery078openalex-snapshot

Drought affects abortion of reproductive organs by exacerbating developmentally driven processes via expansive growth and hydraulics

inferredcites →https://doi.org/10.1093/jxb/ery157openalex-snapshot

Molecular mechanisms controlling plant growth during abiotic stress

inferredcites →https://doi.org/10.1093/jxb/ery437openalex-snapshot

The metabolic response to drought

inferredcites →https://doi.org/10.1093/jxb/erz119openalex-snapshot

Secondary sulfur metabolism in cellular signalling and oxidative stress responses

inferredcites →https://doi.org/10.1093/jxb/erz526openalex-snapshot

Responses of water accumulation and solute metabolism in tomato fruit to water scarcity and implications for main fruit quality variables

inferredcites →https://doi.org/10.1093/nar/gks1219openalex-snapshot

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

inferredcites →https://doi.org/10.1093/nar/gkv1194openalex-snapshot

PANTHER version 10: expanded protein families and functions, and analysis tools

inferredcites →https://doi.org/10.1093/pcp/pcw091openalex-snapshot

Genome-Wide Identification and Analysis of the MYB Transcription Factor Superfamily in Solanum lycopersicum

inferredcites →https://doi.org/10.1093/plphys/kiab115openalex-snapshot

Distinct cellular strategies determine sensitivity to mild drought of Arabidopsis natural accessions

inferredcites →https://doi.org/10.1101/gr.1239303openalex-snapshot

Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks

inferredcites →https://doi.org/10.1101/pdb.prot5652openalex-snapshot

High-Throughput Illumina Strand-Specific RNA Sequencing Library Preparation

inferredcites →https://doi.org/10.1104/pp.010462openalex-snapshot

Ethylene Biosynthesis in Detached Young Persimmon Fruit Is Initiated in Calyx and Modulated by Water Loss from the Fruit

inferredcites →https://doi.org/10.1104/pp.105.063719openalex-snapshot

Changes in Transcriptional Profiles Are Associated with Early Fruit Tissue Specialization in Tomato

inferredcites →https://doi.org/10.1104/pp.110.161752openalex-snapshot

Molecular and Physiological Analysis of Drought Stress in Arabidopsis Reveals Early Responses Leading to Acclimation in Plant Growth

inferredcites →https://doi.org/10.1104/pp.111.186874openalex-snapshot

Tomato Fruit Photosynthesis Is Seemingly Unimportant in Primary Metabolism and Ripening But Plays a Considerable Role in Seed Development

inferredcites →https://doi.org/10.1104/pp.113.222737openalex-snapshot

The Formation and Function of Plant Cuticles

inferredcites →https://doi.org/10.1104/pp.15.01361openalex-snapshot

Ethylene control of fruit ripening: revisiting the complex network of transcriptional regulation

inferredcites →https://doi.org/10.1104/pp.15.01620openalex-snapshot

Ester Cross-Link Profiling of the Cutin Polymer of Wild-Type and Cutin Synthase Tomato Mutants Highlights Different Mechanisms of Polymerization

inferredcites →https://doi.org/10.1104/pp.17.00318openalex-snapshot

Stress-Related Gene Expression Reflects Morphophysiological Responses to Water Deficit

inferredcites →https://doi.org/10.1104/pp.20.01105openalex-snapshot

Transpiration from Tomato Fruit Occurs Primarily via Trichome-Associated Transcuticular Polar Pores

inferredcites →https://doi.org/10.1104/pp.53.1.45openalex-snapshot

Water-deficit Stress, Ethylene Production, and Ripening in Avocado Fruits

inferredcites →https://doi.org/10.1105/tpc.105.036053openalex-snapshot

Transcriptome and Selected Metabolite Analyses Reveal Multiple Points of Ethylene Control during Tomato Fruit Development

inferredcites →https://doi.org/10.1105/tpc.106.045674openalex-snapshot

The Arabidopsis Histidine Phosphotransfer Proteins Are Redundant Positive Regulators of Cytokinin Signaling

inferredcites →https://doi.org/10.1105/tpc.109.066936openalex-snapshot

Fleshy Fruit Expansion and Ripening Are Regulated by the Tomato SHATTERPROOF Gene TAGL1

inferredcites →https://doi.org/10.1105/tpc.111.083089openalex-snapshot

The Jasmonate-ZIM Domain Proteins Interact with the R2R3-MYB Transcription Factors MYB21 and MYB24 to Affect Jasmonate-Regulated Stamen Development in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.113.111732openalex-snapshot

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

inferredcites →https://doi.org/10.1105/tpc.113.112896openalex-snapshot

A Spatio-Temporal Understanding of Growth Regulation during the Salt Stress Response in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.113.115428openalex-snapshot

Flower Development under Drought Stress: Morphological and Transcriptomic Analyses Reveal Acute Responses and Long-Term Acclimation in Arabidopsis

inferredcites →https://doi.org/10.1105/tpc.5.10.1439openalex-snapshot

Fruits: A Developmental Perspective

inferredcites →https://doi.org/10.1111/j.1365-3040.2007.01727.xopenalex-snapshot

The effect of drought and heat stress on reproductive processes in cereals

inferredcites →https://doi.org/10.1111/j.1365-313x.2004.02100.xopenalex-snapshot

Identification of cold‐inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems

inferredcites →https://doi.org/10.1111/j.1467-7652.2008.00391.xopenalex-snapshot

A sulphur deficiency‐induced gene, sdi1, involved in the utilization of stored sulphate pools under sulphur‐limiting conditions has potential as a diagnostic indicator of sulphur nutritional status

inferredcites →https://doi.org/10.1111/j.1469-8137.2005.01609.xopenalex-snapshot

PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit

inferredcites →https://doi.org/10.1111/pbi.13377openalex-snapshot

Manipulation of ZDS in tomato exposes carotenoid‐ and ABA‐specific effects on fruit development and ripening

inferredcites →https://doi.org/10.1111/pce.13494openalex-snapshot

Cytokinin action in response to abiotic and biotic stresses in plants

inferredcites →https://doi.org/10.1111/pce.13684openalex-snapshot

A polerovirus, Potato leafroll virus, alters plant–vector interactions using three viral proteins

inferredcites →https://doi.org/10.1111/plb.12627openalex-snapshot

Ectopic expression of glycosyltransferase UGT 76E11 increases flavonoid accumulation and enhances abiotic stress tolerance in Arabidopsis

inferredcites →https://doi.org/10.1111/ppl.12978openalex-snapshot

The WRKY transcription factor WRKY8 promotes resistance to pathogen infection and mediates drought and salt stress tolerance in Solanum lycopersicum

inferredcites →https://doi.org/10.1111/tpj.13097openalex-snapshot

The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis

inferredcites →https://doi.org/10.1111/tpj.14055openalex-snapshot

The ratio of trichomes to stomata is associated with water use efficiency in Solanum lycopersicum (tomato)

inferredcites →https://doi.org/10.1111/tpj.14057openalex-snapshot

Allele‐specific expression and genetic determinants of transcriptomic variations in response to mild water deficit in tomato

inferredcites →https://doi.org/10.1111/tpj.14364openalex-snapshot

R2R3‐ MYB transcription factor MYB 6 promotes anthocyanin and proanthocyanidin biosynthesis but inhibits secondary cell wall formation in Populus tomentosa

inferredcites →https://doi.org/10.1111/tpj.14633openalex-snapshot

Photosynthesis in non‐foliar tissues: implications for yield

inferredcites →https://doi.org/10.1126/science.1153795openalex-snapshot

Cell Identity Mediates the Response of Arabidopsis Roots to Abiotic Stress

inferredcites →https://doi.org/10.1146/annurev-arplant-042817-040047openalex-snapshot

Modularity in Jasmonate Signaling for Multistress Resilience

inferredcites →https://doi.org/10.1146/annurev-arplant-042817-040218openalex-snapshot

The Physiological Basis of Drought Tolerance in Crop Plants: A Scenario-Dependent Probabilistic Approach

inferredcites →https://doi.org/10.1146/annurev-genet-110410-132507openalex-snapshot

Genetics and Control of Tomato Fruit Ripening and Quality Attributes

inferredcites →https://doi.org/10.1186/1471-2105-11-165openalex-snapshot

Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data

inferredcites →https://doi.org/10.1186/1471-2105-9-559openalex-snapshot

WGCNA: an R package for weighted correlation network analysis

inferredcites →https://doi.org/10.1186/1471-2164-14-57openalex-snapshot

Genome-wide analysis of histone modifiers in tomato: gaining an insight into their developmental roles

inferredcites →https://doi.org/10.1186/1471-2229-10-74openalex-snapshot

The CRF domain defines Cytokinin Response Factor proteins in plants

inferredcites →https://doi.org/10.1186/gb-2009-10-3-r25openalex-snapshot

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

inferredcites →https://doi.org/10.1186/s12864-017-3869-1openalex-snapshot

Profiling of drought-responsive microRNA and mRNA in tomato using high-throughput sequencing

inferredcites →https://doi.org/10.1186/s12870-015-0495-4openalex-snapshot

Carotenoid accumulation during tomato fruit ripening is modulated by the auxin-ethylene balance

inferredcites →https://doi.org/10.1186/s12870-018-1531-yopenalex-snapshot

Drought stress has transgenerational effects on seeds and seedlings in winter oilseed rape (Brassica napus L.)

inferredcites →https://doi.org/10.1186/s13059-017-1263-6openalex-snapshot

Epigenetic and chromatin-based mechanisms in environmental stress adaptation and stress memory in plants

inferredcites →https://doi.org/10.1371/journal.pone.0067879openalex-snapshot

Grain Amaranths Are Defoliation Tolerant Crop Species Capable of Utilizing Stem and Root Carbohydrate Reserves to Sustain Vegetative and Reproductive Growth after Leaf Loss

inferredcites →https://doi.org/10.1371/journal.pone.0177381openalex-snapshot

Identification of TIFY/JAZ family genes in Solanum lycopersicum and their regulation in response to abiotic stresses

inferredcites →https://doi.org/10.3389/fpls.2014.00580openalex-snapshot

Sulfate transporters in the plant’s response to drought and salinity: regulation and possible functions

inferredcites →https://doi.org/10.3389/fpls.2014.00771openalex-snapshot

Cell wall remodeling under abiotic stress

inferredcites →https://doi.org/10.3389/fpls.2015.00997openalex-snapshot

Water Stress Responses of Tomato Mutants Impaired in Hormone Biosynthesis Reveal Abscisic Acid, Jasmonic Acid and Salicylic Acid Interactions

inferredcites →https://doi.org/10.3389/fpls.2015.01172openalex-snapshot

The Potential of the MAGIC TOM Parental Accessions to Explore the Genetic Variability in Tomato Acclimation to Repeated Cycles of Water Deficit and Recovery

inferredcites →https://doi.org/10.3389/fpls.2016.00371openalex-snapshot

Transcriptomic Changes Drive Physiological Responses to Progressive Drought Stress and Rehydration in Tomato

inferredcites →https://doi.org/10.3389/fpls.2016.00735openalex-snapshot

Glycosylation Is a Major Regulator of Phenylpropanoid Availability and Biological Activity in Plants

inferredcites →https://doi.org/10.3389/fpls.2016.00807openalex-snapshot

DNA Methylation and Chromatin Regulation during Fleshy Fruit Development and Ripening

inferredcites →https://doi.org/10.3389/fpls.2017.02108openalex-snapshot

OsJAZ1 Attenuates Drought Resistance by Regulating JA and ABA Signaling in Rice

inferredcites →https://doi.org/10.3389/fpls.2018.00279openalex-snapshot

Water Deficit and Salinity Stress Reveal Many Specific QTL for Plant Growth and Fruit Quality Traits in Tomato

inferredcites →https://doi.org/10.3389/fpls.2019.00228openalex-snapshot

AP2/ERF Transcription Factor Regulatory Networks in Hormone and Abiotic Stress Responses in Arabidopsis

inferredcites →https://doi.org/10.3389/fpls.2019.00314openalex-snapshot

Editorial: Crop Breeding for Drought Resistance

inferredcites →https://doi.org/10.3389/fpls.2019.01349openalex-snapshot

The Crosstalks Between Jasmonic Acid and Other Plant Hormone Signaling Highlight the Involvement of Jasmonic Acid as a Core Component in Plant Response to Biotic and Abiotic Stresses

inferredcites →https://doi.org/10.3389/fpls.2019.01554openalex-snapshot

Tomato Fruit Development and Metabolism

inferredcites →https://doi.org/10.3389/fpls.2019.01676openalex-snapshot

Drought Resistance by Engineering Plant Tissue-Specific Responses

inferredcites →https://doi.org/10.3389/fpls.2020.00978openalex-snapshot

Response of Plants to Water Stress: A Meta-Analysis

inferredcites →https://doi.org/10.3389/fpls.2020.615942openalex-snapshot

Mechanisms Regulating the Dynamics of Photosynthesis Under Abiotic Stresses

inferredcites →https://doi.org/10.3389/fpls.2021.692024openalex-snapshot

Diversity of Plastid Types and Their Interconversions

inferredcites →https://doi.org/10.3389/fpls.2021.774994openalex-snapshot

Omics-Facilitated Crop Improvement for Climate Resilience and Superior Nutritive Value

inferredcites →https://doi.org/10.3390/cells10051136openalex-snapshot

Molecular and Hormonal Mechanisms Regulating Fleshy Fruit Ripening

inferredcites →https://doi.org/10.3390/genes11080900openalex-snapshot

Integration of QTL, Transcriptome and Polymorphism Studies Reveals Candidate Genes for Water Stress Response in Tomato

inferredcites →https://doi.org/10.3390/genes11091011openalex-snapshot

Phenotyping in Arabidopsis and Crops—Are We Addressing the Same Traits? A Case Study in Tomato

inferredcites →https://doi.org/10.3390/ijms19123888openalex-snapshot

Morphological Characterization of Root System Architecture in Diverse Tomato Genotypes during Early Growth

inferredcites →https://doi.org/10.3390/ijms22042013openalex-snapshot

Multifaceted Chromatin Structure and Transcription Changes in Plant Stress Response

inferredcites →https://doi.org/10.4161/psb.27530openalex-snapshot

Internal recycling of respired CO2may be important for plant functioning under changing climate regimes

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Hormonal Regulation of Stress Tolerance in Vegetable Crops

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Decoding Fruit Ripening Dynamics Under Drought Stress: A Review

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Drought stress and the effectiveness of transcriptomics in identifying drought tolerance mechanisms in plants

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Starch deficiency in tomato causes transcriptional reprogramming that modulates fruit development, metabolism, and stress responses

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Evolution of gene networks underlying adaptation to drought stress in the wild tomato Solanum chilense

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Multidimensional analysis of long noncoding RNAs function in Solanaceae plants

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Fruit respiration: putting alternative pathways into perspective

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Transcriptomic analysis reveals the gene regulatory networks involved in leaf and root response to osmotic stress in tomato

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Molecular Mechanisms of Plant Stress Tolerance: From Stress Perception to Phytohormonal Crosstalk and Transcriptional Regulation

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Evaluation of Tomato Landraces for Tolerance to Drought Stress Using Morphological and Physiological Traits

inferred← citeshttps://doi.org/10.3390/plants15010137openalex-snapshot

Transcriptomic Analysis of Early Fruit Development in Micro-Tom Tomato Reveals Conserved and Cultivar-Specific Mechanisms

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