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Morphological Phylogenetics Evaluated Using Novel Evolutionary Simulations

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Arthropod fossil data increase congruence of morphological and molecular phylogenies
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Bayesian methods outperform parsimony but at the expense of precision in the estimation of phylogeny from discrete morphological data
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Bayesian and parsimony approaches reconstruct informative trees from simulated morphological datasets
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Bayesian and likelihood phylogenetic reconstructions of morphological traits are not discordant when taking uncertainty into consideration: a comment on Puttick et al .
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Parsimony and maximum-likelihood phylogenetic analyses of morphology do not generally integrate uncertainty in inferring evolutionary history: a response to Brown et al.
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A mixed relaxed clock model
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Extended implied weighting
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TNT version 1.5, including a full implementation of phylogenetic morphometrics
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Weighted parsimony outperforms other methods of phylogenetic inference under models appropriate for morphology
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HIGH RATES OF EVOLUTION PRECEDED THE ORIGIN OF BIRDS
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phytools: an R package for phylogenetic comparative biology (and other things)
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Probabilistic methods surpass parsimony when assessing clade support in phylogenetic analyses of discrete morphological data
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Empirical realism of simulated data is more important than the model used to generate it: a reply to Goloboff et al.
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Probabilistic methods outperform parsimony in the phylogenetic analysis of data simulated without a probabilistic model
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RE voSim: Organism‐level simulation of macro and microevolution
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Phylogenetic Systematics
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The Importance of Fossils in Phylogeny Reconstruction
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Bayesian Analysis Using a Simple Likelihood Model Outperforms Parsimony for Estimation of Phylogeny from Discrete Morphological Data
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Quantitative Phyletics and the Evolution of Anurans
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Stochastic Simulation and Evolution of Morphology-Towards a Nomothetic Paleontology
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The Shape of Evolution

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Bayesian inference of phylogenetic trees is not misled by correlated discrete morphological characters
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The origin of Rhinocerotoidea and phylogeny of Ceratomorpha (Mammalia, Perissodactyla)
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Molecular phylogenies map to biogeography better than morphological ones
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A new, exceptionally well-preserved Permian actinopterygian fish from the Minnekahta Limestone of South Dakota, USA
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Toward a Comprehensive Anatomical Matrix for Crown Birds: Phylogenetic Insights from the Pectoral Girdle and Forelimb Skeleton
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Evaluating the Accuracy of Methods for Detecting Correlated Rates of Molecular and Morphological Evolution
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How many characters are needed to reconstruct a phylogeny?
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Phylogenetic analyses of ray-finned fishes (Actinopterygii) using collagen type I protein sequences
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Fossils improve phylogenetic analyses of morphological characters
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Inaccurate fossil placement does not compromise tip-dated divergence times
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E vo P hylo : An r package for pre‐ and postprocessing of morphological data from relaxed clock Bayesian phylogenetics
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Empirical distributions of homoplasy in morphological data
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Inaccurate fossil placement does not compromise tip‐dated divergence times
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Exploring the macroevolutionary impact of ecosystem engineers using an individual‐based eco‐evolutionary simulation
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Revising dating estimates and the antiquity of eusociality in termites using the fossilized birth–death process
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INACCURATE FOSSIL PLACEMENT DOES NOT COMPROMISE TIP-DATED DIVERGENCE TIMES
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Phylogenetic congruence, conflict and consilience between molecular and morphological data
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Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates
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TREvoSim v3: An individual based simulation for generating trees and character data
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Molecular Phylogenies Map to Biogeography Better than Morphological Ones
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Consensus and conflict in studies of chelicerate fossils and phylogeny
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The new problem of Chinlestegophis and the origin of caecilians (Amphibia, Gymnophionomorpha) is highly sensitive to old problems of sampling and character construction
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The origin of Amniota in phylogenetic context
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Handling Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated Data
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The new problem of Chinlestegophis and the origin of caecilians (Amphibia, Gymnophionomorpha) is highly sensitive to old problems of sampling and character construction
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The new problem of Chinlestegophis and the origin of caecilians (Amphibia, Gymnophionomorpha) is highly sensitive to old problems of sampling and character construction
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التحليل الوراثي للزعتر الليبي (Thymus capitatus) المستنتج من الصفات المورفولوجية
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Performance of tree-building methods using a morphological dataset and a well-supported Hexapoda phylogeny
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