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Morphological Characters Can Strongly Influence Early Animal Relationships Inferred from Phylogenomic Data Sets

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Bayesian Inference of the Metazoan Phylogeny
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Morphological Phylogenetics in the Genomic Age
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A Large and Consistent Phylogenomic Dataset Supports Sponges as the Sister Group to All Other Animals
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Improved Modeling of Compositional Heterogeneity Supports Sponges as Sister to All Other Animals
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A new criterion and method for amino acid classification
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The influence of taxon sampling on Bayesian divergence time inference under scenarios of rate heterogeneity among lineages
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The Microtubular Cytoskeleton of the Apusomonad Thecamonas, a Sister Lineage to the Opisthokonts
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Post-molecular systematics and the future of phylogenetics
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An artifact caused by undersampling optimal trees in supermatrix analyses of locally sampled characters
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What are the roles of taxon sampling and model fit in tests of cyto-nuclear discordance using avian mitogenomic data?
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Rare genomic changes as a tool for phylogenetics
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Phylogenetic systematics turns over a new leaf
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Counting mutations by parsimony and estimation of mutation rate variation across nucleotide sites —a simulation study
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The Trichoplax genome and the nature of placozoans
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Model selection may not be a mandatory step for phylogeny reconstruction
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Contentious relationships in phylogenomic studies can be driven by a handful of genes
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Animal phylogeny and the ancestry of bilaterians: inferences from morphology and 18S rDNA gene sequences
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Mitochondrial genome of Trichoplax adhaerens supports Placozoa as the basal lower metazoan phylum
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Error, signal, and the placement of Ctenophora sister to all other animals
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Genomic insights into the evolutionary origin of Myxozoa within Cnidaria
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Incomplete taxon sampling is not a problem for phylogenetic inference
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Rapid evolution of animal mitochondrial DNA.
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Exploring Among-Site Rate Variation Models in a Maximum Likelihood Framework Using Empirical Data: Effects of Model Assumptions on Estimates of Topology, Branch Lengths, and Bootstrap Support
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A Likelihood Approach to Estimating Phylogeny from Discrete Morphological Character Data
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Increased Taxon Sampling Greatly Reduces Phylogenetic Error
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Increased Taxon Sampling Is Advantageous for Phylogenetic Inference
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Mosaics of Convergences and Noise in Morphological Phylogenies: What's in a Viverrid-Like Carnivoran?
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The Effect of Combining Molecular and Morphological Data in Published Phylogenetic Analyses
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The impact of taxon sampling on phylogenetic inference: a review of two decades of controversy
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Empirical profile mixture models for phylogenetic reconstruction
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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Random Addition Concatenation Analysis: A Novel Approach to the Exploration of Phylogenomic Signal Reveals Strong Agreement between Core and Shell Genomic Partitions in the Cyanobacteria
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Unleashing the Force of Cladistics? Metazoan Phylogenetics and Hypothesis Testing
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Placozoa Are Not Derived Cnidarians: Evidence from Molecular Morphology
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More Genes or More Taxa? The Relative Contribution of Gene Number and Taxon Number to Phylogenetic Accuracy
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On Reduced Amino Acid Alphabets for Phylogenetic Inference
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Near Intron Positions Are Reliable Phylogenetic Markers: An Application to Holometabolous Insects
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Improved Phylogenomic Taxon Sampling Noticeably Affects Nonbilaterian Relationships
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Choosing among Partition Models in Bayesian Phylogenetics
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IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
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New Statistical Criteria Detect Phylogenetic Bias Caused by Compositional Heterogeneity
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Uninformative Characters and Apparent Conflict Between Molecules and Morphology
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Comparison of models for nucleotide substitution used in maximum-likelihood phylogenetic estimation.
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Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites.
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Among-site rate variation and phylogenetic analysis of 12S rRNA in sigmodontine rodents.
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Cases in which Parsimony or Compatibility Methods will be Positively Misleading
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Character Weighting and Cladistic Analysis
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A Concern for Evidence and a Phylogenetic Hypothesis of Relationships among Epicrates (Boidae, Serpentes)
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Weighting, Partitioning, and Combining Characters in Phylogenetic Analysis
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Improving Marginal Likelihood Estimation for Bayesian Phylogenetic Model Selection
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Detection of Implausible Phylogenetic Inferences Using Posterior Predictive Assessment of Model Fit
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How Should Genes and Taxa be Sampled for Phylogenomic Analyses with Missing Data? An Empirical Study in Iguanian Lizards
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Why Do Phylogenomic Data Sets Yield Conflicting Trees? Data Type Influences the Avian Tree of Life more than Taxon Sampling
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Optimal Rates for Phylogenetic Inference and Experimental Design in the Era of Genome-Scale Data Sets
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Morphological Data Sets Fit a Common Mechanism Much More Poorly than DNA Sequences and Call Into Question the Mkv Model
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Marginal Likelihoods in Phylogenetics: A Review of Methods and Applications
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Mutation rate variability as a driving force in adaptive evolution
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Extended implied weighting
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A review of long‐branch attraction
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Weighting against homoplasy improves phylogenetic analysis of morphological data sets
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TNT, a free program for phylogenetic analysis
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Unringing a bell: metazoan phylogenomics and the partition bootstrap
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The Genome of the Ctenophore Mnemiopsis leidyi and Its Implications for Cell Type Evolution
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How natural selection affects mouse coat color
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Evolution of flower color pattern through selection on regulatory small RNAs
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MOLECULAR VERSUS MORPHOLOGICAL APPROACHES TO SYSTEMATICS
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On the Independent Origins of Complex Brains and Neurons
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Different evolutionary pathways underlie the morphology of wrist bones in hominoids
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Heterotachy and long-branch attraction in phylogenetics
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Convergent evolution of neural systems in ctenophores
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Concatenated Analysis Sheds Light on Early Metazoan Evolution and Fuels a Modern “Urmetazoon” Hypothesis
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Comparative genomics and the nature of placozoan species
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Comparative Genomics of Large Mitochondria in Placozoans
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Agent of Whirling Disease Meets Orphan Worm: Phylogenomic Analyses Firmly Place Myxozoa in Cnidaria
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Secondary Structure Analyses of the Nuclear rRNA Internal Transcribed Spacers and Assessment of Its Phylogenetic Utility across the Brassicaceae (Mustards)
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A Successive Approximations Approach to Character Weighting
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Cases in which Parsimony or Compatibility Methods Will be Positively Misleading
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Character Weighting and Cladistic Analysis
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A Concern for Evidence and a Phylogenetic Hypothesis of Relationships Among Epicrates (Boidae, Serpentes)
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The Early Evolution of Metazoa and the Significance of Problematic Taxa.
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Morphology is dead – long live morphology! Integrating MorphoEvoDevo into molecular EvoDevo and phylogenomics
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As Time Goes by: A Simple Fool's Guide to Molecular Clock Approaches in Invertebrates *
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Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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BAD2matrix: Phylogenomic matrix concatenation, indel coding, and more
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The enigmatic Placozoa part 1: Exploring evolutionary controversies and poor ecological knowledge
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Total evidence phylogeny of platyrrhine primates and a comparison of undated and tip-dating approaches
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Combining genomic, phenotypic and Sanger sequencing data to elucidate the phylogeny of the two-clawed spiders (Dionycha)
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Multiple outgroups can cause random rooting in phylogenomics
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Phylogeny and evolution of male genitalia in Withiidae (Arachnida: Pseudoscorpiones)
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Toward a Comprehensive Anatomical Matrix for Crown Birds: Phylogenetic Insights from the Pectoral Girdle and Forelimb Skeleton
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Comprehensive Species Sampling and Sophisticated Algorithmic Approaches Refute the Monophyly of Arachnida
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Six-State Amino Acid Recoding is not an Effective Strategy to Offset Compositional Heterogeneity and Saturation in Phylogenetic Analyses
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Evaluating the Accuracy of Methods for Detecting Correlated Rates of Molecular and Morphological Evolution
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Convergent evolution in the unique and bizarre buccopharyngeal morphology of sand-eating Malagasy tadpoles (Anura: Mantellidae)
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Fossils improve phylogenetic analyses of morphological characters
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The Cambrian cirratuliform Iotuba denotes an early annelid radiation
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Inter-species differences in wound-healing rate: a comparative study involving primates and rodents
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Hox Gene Variation Drives Morphological Specialization of Humpback Grouper Cromileptes altivelis
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Why should we compare morphological and molecular disparity?
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Morphological data, phylogenomics and recalcitrant nodes
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On a recent phylogenetic reanalysis of Sphaenorhynchini (Anura: Hylidae: Hylinae): Does it all come down to the method?
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Microallopatric Speciation in Southern African Dung Beetle Genus Macroderes Driven by Miocene Aridification and Ancestral Flight Loss
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Integrative Taxonomy for Species Delimitation: A Case Study in Two Widely Accepted Yet Morphologically Confounding Rosa Species Within Sect. Pimpinellifoliae (Rosaceae)
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What We Talk About When We Talk About Microbial Species
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Evolutionary systematics of the Staphylininae rove beetles (Coleoptera: Staphylinidae) resolved by integration of phylogenomics, comparative morphology and historical biogeography
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Systematic and taxonomic revision of emerald and tigertail dragonflies (Anisoptera: Synthemistidae and Corduliidae)
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The first consolidation of morphological, molecular, and phylogeographic data for the finely differentiated genus Diaphoreolis (Nudibranchia: Trinchesiidae)
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Renewed perspectives on the sedentary-pelagic last common bilaterian ancestor
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Polka-dotted treasures: Revising a clade of ascidian- and bivalve-associated shrimps (Caridea: Palaemonidae)
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Phylogenetic congruence, conflict and consilience between molecular and morphological data
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Total-evidence phylogeny reveals recent crown group radiation and biogeographical history of hamsters
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Craniodental Morphology and Phylogeny of Marsupials
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Comparative Morphology of the Stingless Bees (Apidae, Meliponini) and Its Phylogenetic Relevance
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Exploring genome gene content and morphological analysis to test recalcitrant nodes in the animal phylogeny
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Molecular Morphology for Parasite Taxonomy
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EvoNet: A phylogenomic and systems biology approach to identify genes underlying plant survival in marginal, low‐N soils
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On the Nature of Organs and Organ Systems – A Chapter in the History and Philosophy of Biology
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Phylogenomics and the first higher taxonomy of Placozoa, an ancient and enigmatic animal phylum
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Let’s end taxonomic blank slates with molecular morphology
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Ontogeny, Phylotypic Periods, Paedomorphosis, and Ontogenetic Systematics
inferred← citeshttps://doi.org/10.3390/biology11081185openalex-snapshot
Integrative Phylogenetics: Tools for Palaeontologists to Explore the Tree of Life
inferred← citeshttps://doi.org/10.70675/455a2f84z0406z4e4ez9202za61ad85c85d6openalex-snapshot
Crocidura shrews of tropical Africa : Phylogeography and morphological evolution
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