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Empirical and Methodological Challenges to the Model-Based Inference of Diversification Rates in Extinct Clades
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Outgoing claims: the papers this work cites, builds on, or argues with.
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A Middle Jurassic heterodontosaurid dinosaur from Patagonia and the evolution of heterodontosaurids
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The time-dependent reconstructed evolutionary process with a key-role for mass-extinction events
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Diversity dynamics: molecular phylogenies need the fossil record
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Tip-dating and the origin of Telluraves
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New small-bodied ornithopods (Dinosauria, Neornithischia) from the Early Cretaceous Wonthaggi Formation (Strzelecki Group) of the Australian-Antarctic rift system, with revision of Qantassaurus intrepidus Rich and Vickers-Rich, 1999
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Detecting diversification rates in relation to preservation and tectonic history from simulated fossil records
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On the probabilities of branch durations and stratigraphic gaps in phylogenies of fossil taxa when rates of diversification and sampling vary over time
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Improved estimation of macroevolutionary rates from fossil data using a Bayesian framework
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Stratigraphic biases in the analysis of taxonomic survivorship
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Untangling the dinosaur family tree
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Ecological niche modelling does not support climatically-driven dinosaur diversity decline before the Cretaceous/Paleogene mass extinction
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Five palaeobiological laws needed to understand the evolution of the living biota
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A model with many small shifts for estimating species-specific diversification rates
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Extant timetrees are consistent with a myriad of diversification histories
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Global patterns of insect diversification: towards a reconciliation of fossil and molecular evidence?
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Explosive Pleistocene diversification and hemispheric expansion of a “great speciator”
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Critically evaluating the theory and performance of Bayesian analysis of macroevolutionary mixtures
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Dinosaurs in decline tens of millions of years before their final extinction
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Macroevolutionary diversification rates show time dependency
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Trilobite evolutionary rates constrain the duration of the Cambrian explosion
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Pisanosaurus mertii and the Triassic ornithischian crisis: could phylogeny offer a solution?
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A new phylogeny of cerapodan dinosaurs
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Phylogenetic reassessment ofPisanosaurus mertiiCasamiquela, 1967, a basal dinosauriform from the Late Triassic of Argentina
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Postcranial anatomy ofYinlong downsi(Dinosauria: Ceratopsia) from the Upper Jurassic Shishugou Formation of China and the phylogeny of basal ornithischians
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A basal ornithopod dinosaur from the Cenomanian of the Czech Republic
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Origination and Extinction through the Phanerozoic: A New Approach
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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Estimating the Effective Sample Size of Tree Topologies from Bayesian Phylogenetic Analyses
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Inferring Speciation and Extinction Rates under Different Sampling Schemes
inferredcites →https://doi.org/10.1093/sysbio/syab002openalex-snapshot
A Total-Group Phylogenetic Metatree for Cetacea and the Importance of Fossil Data in Diversification Analyses
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Simulating Trees with a Fixed Number of Extant Species
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Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence Data
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Is BAMM Flawed? Theoretical and Practical Concerns in the Analysis of Multi-Rate Diversification Models
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Inferring Diversification Rate Variation From Phylogenies With Fossils
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Phylogenies and Diversification Rates: Variance Cannot Be Ignored
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19 Dubious Ways to Compute the Marginal Likelihood of a Phylogenetic Tree Topology
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Estimating Diversity Through Time Using Molecular Phylogenies: Old and Species-Poor Frog Families are the Remnants of a Diverse Past
inferredcites →https://doi.org/10.1093/sysbio/syz081openalex-snapshot
Estimating Diversification Rates on Incompletely Sampled Phylogenies: Theoretical Concerns and Practical Solutions
inferredcites →https://doi.org/10.1098/rsbl.2011.0210openalex-snapshot
A refined modelling approach to assess the influence of sampling on palaeobiodiversity curves: new support for declining Cretaceous dinosaur richness
inferredcites →https://doi.org/10.1098/rsbl.2016.0237openalex-snapshot
Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria)
inferredcites →https://doi.org/10.1098/rsbl.2018.0458openalex-snapshot
Diversification dynamics of mammalian clades during the K–Pg mass extinction
inferredcites →https://doi.org/10.1098/rsbl.2020.0231openalex-snapshot
Extinction rates of non-avian dinosaur species are uncorrelated with the rate of evolution of phylogenetically informative characters
inferredcites →https://doi.org/10.1098/rsbl.2020.0754openalex-snapshot
Morphological and phylogeographic evidence for budding speciation: an example in hominins
inferredcites →https://doi.org/10.1098/rsos.140375openalex-snapshot
Rapid diversification and secondary sympatry in Australo-Pacific kingfishers (Aves: Alcedinidae:Todiramphus)
inferredcites →https://doi.org/10.1098/rsos.201195openalex-snapshot
Dinosaur diversification rates were not in decline prior to the K-Pg boundary
inferredcites →https://doi.org/10.1098/rspb.2000.1278openalex-snapshot
Testing macro–evolutionary models using incomplete molecular phylogenies
inferredcites →https://doi.org/10.1098/rspb.2008.0715openalex-snapshot
Dinosaurs and the Cretaceous Terrestrial Revolution
inferredcites →https://doi.org/10.1098/rspb.2009.0352openalex-snapshot
Dinosaur diversity and the rock record
inferredcites →https://doi.org/10.1098/rspb.2011.1439openalex-snapshot
Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record
inferredcites →https://doi.org/10.1098/rspb.2013.2312openalex-snapshot
A dynamic global equilibrium in carnivoran diversification over 20 million years
inferredcites →https://doi.org/10.1098/rspb.2018.0122openalex-snapshot
Diversity-dependent evolutionary rates in early Palaeozoic zooplankton
inferredcites →https://doi.org/10.1098/rspb.2019.0685openalex-snapshot
Ignoring stratigraphic age uncertainty leads to erroneous estimates of species divergence times under the fossilized birth–death process
inferredcites →https://doi.org/10.1098/rspb.2019.1502openalex-snapshot
A phylogenomic framework for pelagiarian fishes (Acanthomorpha: Percomorpha) highlights mosaic radiation in the open ocean
inferredcites →https://doi.org/10.1098/rstb.1994.0068openalex-snapshot
The reconstructed evolutionary process
inferredcites →https://doi.org/10.1098/rstb.1998.0212openalex-snapshot
Rates of speciation in the fossil record
inferredcites →https://doi.org/10.1098/rstb.2015.0130openalex-snapshot
The non-uniformity of fossil preservation
inferredcites →https://doi.org/10.1111/2041-210x.12088openalex-snapshot
Modelling distributions of fossil sampling rates over time, space and taxa: assessment and implications for macroevolutionary studies
inferredcites →https://doi.org/10.1111/2041-210x.12199openalex-snapshot
BAMM tools: an R package for the analysis of evolutionary dynamics on phylogenetic trees
inferredcites →https://doi.org/10.1111/2041-210x.12263openalex-snapshot
PyRate: a new program to estimate speciation and extinction rates from incomplete fossil data
inferredcites →https://doi.org/10.1111/2041-210x.12563openalex-snapshot
A Bayesian approach for detecting the impact of mass‐extinction events on molecular phylogenies when rates of lineage diversification may vary
inferredcites →https://doi.org/10.1111/2041-210x.12626openalex-snapshot
Bayesian model selection with BAMM: effects of the model prior on the inferred number of diversification shifts
inferredcites →https://doi.org/10.1111/2041-210x.13170openalex-snapshot
FossilSim : An r package for simulating fossil occurrence data under mechanistic models of preservation and recovery
inferredcites →https://doi.org/10.1111/2041-210x.13182openalex-snapshot
An r package and online resource for macroevolutionary studies using the ray‐finned fish tree of life
inferredcites →https://doi.org/10.1111/ele.12251openalex-snapshot
Phylogenetic approaches for studying diversification
inferredcites →https://doi.org/10.1111/evo.12820openalex-snapshot
Challenges in the estimation of extinction from molecular phylogenies: A response to Beaulieu and O'Meara
inferredcites →https://doi.org/10.1111/evo.14124openalex-snapshot
Branching patterns in phylogenies cannot distinguish diversity‐dependent diversification from time‐dependent diversification
inferredcites →https://doi.org/10.1111/j.0014-3820.2006.tb01194.xopenalex-snapshot
LIKELIHOOD METHODS FOR DETECTING TEMPORAL SHIFTS IN DIVERSIFICATION RATES
inferredcites →https://doi.org/10.1111/j.1558-5646.1994.tb01341.xopenalex-snapshot
PHYLOGENIES WITHOUT FOSSILS
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00794.xopenalex-snapshot
EXTINCTION DURING EVOLUTIONARY RADIATIONS: RECONCILING THE FOSSIL RECORD WITH MOLECULAR PHYLOGENIES
inferredcites →https://doi.org/10.1111/j.1558-5646.2009.00926.xopenalex-snapshot
EXTINCTION RATES SHOULD NOT BE ESTIMATED FROM MOLECULAR PHYLOGENIES
inferredcites →https://doi.org/10.1111/j.1558-5646.2011.01415.xopenalex-snapshot
HOW DO GEOLOGICAL SAMPLING BIASES AFFECT STUDIES OF MORPHOLOGICAL EVOLUTION IN DEEP TIME? A CASE STUDY OF PTEROSAUR (REPTILIA: ARCHOSAURIA) DISPARITY
inferredcites →https://doi.org/10.1111/nph.13247openalex-snapshot
Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil record
inferredcites →https://doi.org/10.1126/science.1174638openalex-snapshot
Good Genes and Good Luck: Ammonoid Diversity and the End-Permian Mass Extinction
inferredcites →https://doi.org/10.1126/science.231.4734.129openalex-snapshot
Background and Mass Extinctions: The Alternation of Macroevolutionary Regimes
inferredcites →https://doi.org/10.1144/jgs2019-061openalex-snapshot
Completeness of the known graptoloid palaeontological record
inferredcites →https://doi.org/10.1146/annurev-ecolsys-112414-054207openalex-snapshot
Integrating Paleontological and Phylogenetic Approaches to Macroevolution
inferredcites →https://doi.org/10.1186/s12859-017-1505-3openalex-snapshot
VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces
inferredcites →https://doi.org/10.1186/s12862-015-0432-zopenalex-snapshot
Detecting patterns of species diversification in the presence of both rate shifts and mass extinctions
inferredcites →https://doi.org/10.1186/s12915-020-00901-5openalex-snapshot
Sphenodontian phylogeny and the impact of model choice in Bayesian morphological clock estimates of divergence times and evolutionary rates
inferredcites →https://doi.org/10.1371/journal.pbio.1001381openalex-snapshot
Clade Age and Species Richness Are Decoupled Across the Eukaryotic Tree of Life
inferredcites →https://doi.org/10.1371/journal.pcbi.1003919openalex-snapshot
Bayesian Inference of Sampled Ancestor Trees for Epidemiology and Fossil Calibration
inferredcites →https://doi.org/10.1371/journal.pcbi.1006650openalex-snapshot
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
inferredcites →https://doi.org/10.1371/journal.pone.0025780openalex-snapshot
The Molecular Phylogenetic Signature of Clades in Decline
inferredcites →https://doi.org/10.1371/journal.pone.0089543openalex-snapshot
Automatic Detection of Key Innovations, Rate Shifts, and Diversity-Dependence on Phylogenetic Trees
inferredcites →https://doi.org/10.1525/california/9780520242098.003.0033openalex-snapshot
Dinosaur Extinction
inferredcites →https://doi.org/10.1666/0094-8373(2001)027<0751:jeosat>2.0.co;2openalex-snapshot
Joint estimation of sampling and turnover rates from fossil databases: capture-mark-recapture methods revisited
inferredcites →https://doi.org/10.1666/06020.1openalex-snapshot
An Analysis of the History of Marine Animal Diversity
inferredcites →https://doi.org/10.1666/06084.1openalex-snapshot
Symmetric waxing and waning of marine invertebrate genera
inferredcites →https://doi.org/10.1666/11-002.1openalex-snapshot
Species-level phylogenetic analysis of pterocephaliids (Trilobita, Cambrian) from the Great Basin, western USA
inferredcites →https://doi.org/10.1666/13036openalex-snapshot
Accurate and precise estimates of origination and extinction rates
inferredcites →https://doi.org/10.3389/fgene.2019.01049openalex-snapshot
Using the Fossil Record to Evaluate Timetree Timescales
inferredcites →https://doi.org/10.5281/zenodo.16171435openalex-snapshot
Saurischian monophyly and the origin of birds
inferredcites →https://doi.org/10.5860/choice.34-0316openalex-snapshot
Dinosaur extinction and the end of an era: what the fossils say
inferredcites →https://doi.org/10.7717/peerj.1523openalex-snapshot
The systematic relationships and biogeographic history of ornithischian dinosaurs
inferredcites →https://doi.org/10.7717/peerj.4417openalex-snapshot
How has our knowledge of dinosaur diversity through geologic time changed through research history?
inferredcites →https://doi.org/10.7717/peerj.5495openalex-snapshot
What affects power to estimate speciation rate shifts?
inferredcites →https://doi.org/10.7717/peerj.7247openalex-snapshot
A new paravian dinosaur from the Late Jurassic of North America supports a late acquisition of avian flight
inferredcites →https://doi.org/10.7717/peerj.9368openalex-snapshot
Tip dating with fossil sites and stratigraphic sequences
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlae048zenodo-depositor-declared
Osteology, phylogenetic affinities, and palaeobiogeographic significance of the bizarre ornithischian dinosaur Ajkaceratops kozmai from the Late Cretaceous European archipelago
inferred← citeshttps://doi.org/10.1002/spp2.1482openalex-snapshot
Phylogenetic position of Bohemiacinctus gen. nov. (Echinodermata, Cincta) from the Cambrian of Bohemia: implications for macroevolution and the role of taxon sampling in palaeobiological systematics
inferred← citeshttps://doi.org/10.1007/s11430-025-1989-4openalex-snapshot
Diversity dynamics of placoderms (jawed stem-Gnathostomata) during the Middle Paleozoic and their environmental associations
inferred← citeshttps://doi.org/10.1016/j.biocon.2022.109733openalex-snapshot
Macroevolutionary perspectives on Anthropocene extinction
inferred← citeshttps://doi.org/10.1016/j.cub.2021.07.071openalex-snapshot
Biodiversity across space and time in the fossil record
inferred← citeshttps://doi.org/10.1016/j.cub.2025.03.002openalex-snapshot
The radiation of Hymenoptera illuminated by Bayesian inferences from the fossil record
inferred← citeshttps://doi.org/10.1017/ext.2024.5openalex-snapshot
Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr1openalex-snapshot
Author comment: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R0/PR1
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr2openalex-snapshot
Recommendation: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R0/PR2
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr3openalex-snapshot
Decision: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R0/PR3
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr4openalex-snapshot
Author comment: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R1/PR4
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr5openalex-snapshot
Recommendation: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R1/PR5
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr6openalex-snapshot
Decision: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R1/PR6
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr7openalex-snapshot
Author comment: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R2/PR7
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr8openalex-snapshot
Recommendation: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R2/PR8
inferred← citeshttps://doi.org/10.1017/ext.2024.5.pr9openalex-snapshot
Decision: Mechanistic phylodynamic models do not provide conclusive evidence that non-avian dinosaurs were in decline before their final extinction — R2/PR9
inferred← citeshttps://doi.org/10.1017/pab.2024.34openalex-snapshot
The FossilSimShiny app for simulating under the fossilized birth–death process and plotting the results
inferred← citeshttps://doi.org/10.1038/s41467-022-30507-0openalex-snapshot
Global diversity dynamics in the fossil record are regionally heterogeneous
inferred← citeshttps://doi.org/10.1038/s41559-023-02116-7openalex-snapshot
Conceptual and empirical bridges between micro- and macroevolution
inferred← citeshttps://doi.org/10.1038/s41598-025-98083-zopenalex-snapshot
Exploring the diversity and disparity of rhabdodontomorph ornithopods from the Late Cretaceous European archipelago
inferred← citeshttps://doi.org/10.1038/s42003-025-07773-xopenalex-snapshot
Diversification and extinction of Hemiptera in deep time
inferred← citeshttps://doi.org/10.1073/pnas.2317795121openalex-snapshot
The Angiosperm Terrestrial Revolution buffered ants against extinction
inferred← citeshttps://doi.org/10.1080/02724634.2023.2181087openalex-snapshot
Craniomandibular osteology of Manidens condorensis (Ornithischia: Heterodontosauridae) from the upper Lower Jurassic of Argentina
inferred← citeshttps://doi.org/10.1080/14772019.2024.2346577openalex-snapshot
A comprehensive phylogenetic analysis on early ornithischian evolution
inferred← citeshttps://doi.org/10.1086/723626openalex-snapshot
Diversity-Dependent Diversification in the History of Marine Animals
inferred← citeshttps://doi.org/10.1093/evolut/qpaf091openalex-snapshot
Open ecosystems expansion, competition, and predation shaped the evolution of Antilocapridae
inferred← citeshttps://doi.org/10.1093/jeb/voaf043openalex-snapshot
Variation in prey availability over time shaped the extinction dynamics of sabre-toothed cats
inferred← citeshttps://doi.org/10.1093/sysbio/syac049openalex-snapshot
Fossils Do Not Substantially Improve, and May Even Harm, Estimates of Diversification Rate Heterogeneity
inferred← citeshttps://doi.org/10.1093/sysbio/syae068openalex-snapshot
A Double-Edged Sword: Evolutionary Novelty Along Deep-Time Diversity Oscillation in an Iconic Group of Predatory Insects (Neuroptera: Mantispoidea)
inferred← citeshttps://doi.org/10.1093/sysbio/syaf050openalex-snapshot
Practical Guide and Review of Fossil Tip-Dating in Phylogenetics
inferred← citeshttps://doi.org/10.1093/zoolinnean/zlag111openalex-snapshot
The evolution of ornithischian nomenclature
inferred← citeshttps://doi.org/10.1098/rsbl.2024.0443openalex-snapshot
The spatiotemporal distribution of Mesozoic dinosaur diversity
inferred← citeshttps://doi.org/10.1098/rsos.240321openalex-snapshot
A macroevolutionary analysis of European Late Upper Palaeolithic stone tool shape using a Bayesian phylodynamic framework
inferred← citeshttps://doi.org/10.1098/rspb.2025.2272openalex-snapshot
Global extinction events and persistent age-dependency in sharks and rays over the past 145 million years
inferred← citeshttps://doi.org/10.1098/rspb.2026.0485openalex-snapshot
Dawn of the dinosaurs demonstrates early diversification bursts and a potential role for neutral dynamics during major evolutionary radiations
inferred← citeshttps://doi.org/10.1111/cla.12583openalex-snapshot
A new abelisaurid dinosaur from the end Cretaceous of Patagonia and evolutionary rates among the Ceratosauria
inferred← citeshttps://doi.org/10.1111/ele.70171openalex-snapshot
Can Macroevolution Inform Contemporary Extinction Risk?
inferred← citeshttps://doi.org/10.1126/sciadv.adl2643openalex-snapshot
Trait-mediated speciation and human-driven extinctions in proboscideans revealed by unsupervised Bayesian neural networks
inferred← citeshttps://doi.org/10.1126/sciadv.ado6462openalex-snapshot
Sea level controls on Ediacaran-Cambrian animal radiations
inferred← citeshttps://doi.org/10.1126/science.adj2793openalex-snapshot
Imbalanced speciation pulses sustain the radiation of mammals
inferred← citeshttps://doi.org/10.1146/annurev-ecolsys-102220-030855openalex-snapshot
Integrating Fossil Observations Into Phylogenetics Using the Fossilized Birth–Death Model
inferred← citeshttps://doi.org/10.21203/rs.3.rs-907951/v1openalex-snapshot
Diversification Declines in Major Dinosaurian Clades are not Because of Edge Effects or Incomplete Fossil Sampling
inferred← citeshttps://doi.org/10.3389/feart.2022.899562openalex-snapshot
So Volcanoes Created the Dinosaurs? A Quantitative Characterization of the Early Evolution of Terrestrial Pan-Aves
inferred← citeshttps://doi.org/10.3389/fmamm.2024.1518039openalex-snapshot
Spatiotemporal variability in the South American mammalian fossil record and its impact on macroevolutionary inference
inferred← citeshttps://doi.org/10.5710/amgh.12.12.2024.3618openalex-snapshot
Another Twist Decoding the Patterns of Evolution of the South American Extinct Mammalian Predators (Sparassodonta, Metatheria)
inferred← citeshttps://doi.org/10.7287/peerj.12362v0.1/reviews/1openalex-snapshot
Peer Review #1 of "The phylogenetic nomenclature of ornithischian dinosaurs (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12362v0.1/reviews/2openalex-snapshot
Peer Review #2 of "The phylogenetic nomenclature of ornithischian dinosaurs (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12362v0.1/reviews/3openalex-snapshot
Peer Review #3 of "The phylogenetic nomenclature of ornithischian dinosaurs (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12362v0.2/reviews/1openalex-snapshot
Peer Review #1 of "The phylogenetic nomenclature of ornithischian dinosaurs (v0.2)"
inferred← citeshttps://doi.org/10.7717/peerj.12362openalex-snapshot
The phylogenetic nomenclature of ornithischian dinosaurs
Editorial review for independent work. ICSAC — the Institute for Complexity
Science and Advanced Computing — runs a structured editorial panel for researchers
publishing outside journals, and publishes on CiteStamp rails. Submission is free
and goes through ORCID: icsacinstitute.org/submit.