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A Phylogenetic Estimation of Trophic Transition Networks for Ascomycetous Fungi: Are Lichens Cradles of Symbiotrophic Fungal Diversification?

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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PAUP * [Phylogenetic Analysis Using Parsimony (and Other Methods)]

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Use of rRNA Secondary Structure in Phylogenetic Studies to Identify Homologous Positions: An Example of Alignment and Data Presentation from the Frogs

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The phylogeny of plant and animal pathogens in the Ascomycota

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Accounting for phylogenetic uncertainty in comparative studies of evolution and adaptation

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Potential of Fungi in the Discovery of Novel, Low-Molecular Weight Pharmaceuticals

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Endophytic fungi as biocontrol agents of Theobroma cacao pathogens

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Understanding the diversity of foliar endophytic fungi: progress, challenges, and frontiers

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A higher-level phylogenetic classification of the Fungi

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Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees

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Evolution of endophyte?plant symbioses

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Contribution of RPB2 to multilocus phylogenetic studies of the euascomycetes (Pezizomycotina, Fungi) with special emphasis on the lichen-forming Acarosporaceae and evolution of polyspory

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Phylogenetic relationships, host affinity, and geographic structure of boreal and arctic endophytes from three major plant lineages

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The general stochastic model of nucleotide substitution

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The land flora: a phototroph-fungus partnership?

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Fungal endophytes nearly double minimum leaf conductance in seedlings of a neotropical tree species

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The magnitude of fungal diversity: the 1.5 million species estimate revisited

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The endophytic continuum

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Globosumones A−C, Cytotoxic Orsellinic Acid Esters from the Sonoran Desert Endophytic Fungus Chaetomium globosum

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Biodiversity of palm fungi in the tropics: are global fungal diversity estimates realistic?

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Evolutionary instability of ectomycorrhizal symbioses in basidiomycetes

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Major fungal lineages are derived from lichen symbiotic ancestors

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Reconstructing the early evolution of Fungi using a six-gene phylogeny

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Are tropical fungal endophytes hyperdiverse?

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A community of unknown, endophytic fungi in western white pine

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Fungal endophytes limit pathogen damage in a tropical tree

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Ecological and evolutionary significance of mycorrhizal symbioses in vascular plants (A Review)

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Biological evolution and statistical physics

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Endophytic fungi of Manilkara bidentata leaves in Puerto Rico

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Two Foliose Lichens as Microfungal Ecological Niches

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Integrating Ambiguously Aligned Regions of DNA Sequences in Phylogenetic Analyses Without Violating Positional Homology

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A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data

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Bayesian Estimation of Ancestral Character States on Phylogenies

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Polytomies and Bayesian Phylogenetic Inference

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WASABI: An Automated Sequence Processing System for Multigene Phylogenies

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The Maximum Likelihood Approach to Reconstructing Ancestral Character States of Discrete Characters on Phylogenies

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A five-gene phylogeny of Pezizomycotina

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Evolutionary Origins and Ecological Consequences of Endophyte Symbiosis with Grasses

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MODELTEST: testing the model of DNA substitution.

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MRBAYES: Bayesian inference of phylogenetic trees

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Bayes or Bootstrap? A Simulation Study Comparing the Performance of Bayesian Markov Chain Monte Carlo Sampling and Bootstrapping in Assessing Phylogenetic Confidence

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Comparison of Bayesian and Maximum Likelihood Bootstrap Measures of Phylogenetic Reliability

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Insect-Fungal Associations Ecology and Evolution

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Ecology and Evolution of Fungal Endophytes and Their Roles against Insects

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The Fungi

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Mathematics of Evolution and Phylogeny

inferredcites →https://doi.org/10.1093/oso/9780198566106.003.0005openalex-snapshot

Mixture Models in Phylogenetic Inference

inferredcites →https://doi.org/10.1093/sysbio/45.4.524openalex-snapshot

Testing for Phylogenetic Conflict Among Molecular Data Sets in the Tribe Triticeae (Gramineae)

inferredcites →https://doi.org/10.1094/phyto.1997.87.9.888openalex-snapshot

Where Are All the Undescribed Fungi?

inferredcites →https://doi.org/10.1101/gr.8.3.175openalex-snapshot

Base-Calling of Automated Sequencer Traces Using Phred. I. Accuracy Assessment

inferredcites →https://doi.org/10.1101/gr.8.3.186openalex-snapshot

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities

inferredcites →https://doi.org/10.1111/j.1365-294x.2007.03225.xopenalex-snapshot

Phylogenetic evidence for an animal pathogen origin of ergot and the grass endophytes

inferredcites →https://doi.org/10.1126/science.1061457openalex-snapshot

Molecular Evidence for the Early Colonization of Land by Fungi and Plants

inferredcites →https://doi.org/10.1126/science.1072191openalex-snapshot

AGTR2 Mutations in X-Linked Mental Retardation

inferredcites →https://doi.org/10.1126/science.1078055openalex-snapshot

Thermotolerance Generated by Plant/Fungal Symbiosis

inferredcites →https://doi.org/10.1126/science.285.5434.1742openalex-snapshot

Fungal Endophyte Symbiosis and Plant Diversity in Successional Fields

inferredcites →https://doi.org/10.1139/b04-021openalex-snapshot

Evolutionary studies of ectomycorrhizal fungi: recent advances and future directions

inferredcites →https://doi.org/10.1186/1471-2105-3-2openalex-snapshot

The Comparative RNA Web (CRW) Site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

inferredcites →https://doi.org/10.1201/9781482277302-1openalex-snapshot

An Overview of Endophytic Microbes: Endophytism Defined

inferredcites →https://doi.org/10.1639/0007-2745(2003)106[0080:lfieab]2.0.co;2openalex-snapshot

Lichenicolous Fungi: Interactions, Evolution, and Biodiversity

inferredcites →https://doi.org/10.1890/0012-9658(2000)081[2352:tfe]2.0.co;2openalex-snapshot

Tropical Forest Ecology

inferredcites →https://doi.org/10.1890/05-1459openalex-snapshot

DIVERSITY AND HOST RANGE OF FOLIAR FUNGAL ENDOPHYTES: ARE TROPICAL LEAVES BIODIVERSITY HOTSPOTS?

inferredcites →https://doi.org/10.2307/3760967openalex-snapshot

Endophytic Fungi of Manilkara bidentata Leaves in Puerto Rico

inferredcites →https://doi.org/10.2307/3760986openalex-snapshot

Persistence of Sphaeropsis sapinea on or in Asymptomatic Shoots of Red and Jack Pines

inferredcites →https://doi.org/10.3732/ajb.90.11.1661openalex-snapshot

Endophytic Xylaria (Xylariaceae) among liverworts and angiosperms: phylogenetics, distribution, and symbiosis

inferredcites →https://doi.org/10.3732/ajb.91.10.1446openalex-snapshot

Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits

inferredcites →https://doi.org/10.3852/mycologia.98.6.1018openalex-snapshot

A five-gene phylogeny of Pezizomycotina

inferredcites →https://doi.org/10.3852/mycologia.99.2.185openalex-snapshot

Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR

inferredcites →https://doi.org/10.5860/choice.39-2183openalex-snapshot

MacClade 4.0: analysis of phylogeny and character evolution

inferredcites →https://doi.org/10.5860/choice.42-4627openalex-snapshot

Assembling the tree of life

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Dlhawksworthia flavoparmeliae sp. nov., a new endolichenic fungus in Phaeosphaeriaceae

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Cryptic associated fungi and algae isolated from Antarctic epilithic lichens of the Victoria Land and the description of five new fungal species

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The ecology of lichenicolous lichens: a case-study in Italy

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Eukaryotic Microbial Communities Associated with Rock- dwelling Foliose Lichens: A Functional Morphological and Microecological Analysis

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Assessment of In‐Vitro Culture as a Sustainable and Eco‐friendly Approach of Propagating Lichens and Their Constituent Organisms for Bioprospecting Applications

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inferred← citeshttps://doi.org/10.1002/ajb2.70210openalex-snapshot

Exploring the lichenization continuum through the marine tripartite symbiosis of Collemopsidium pelvetiae

inferred← citeshttps://doi.org/10.1002/gcb4.70000openalex-snapshot

Future Range Shifts and Diversity Patterns of Antarctic Lecideoid Lichens Under Climate Change Scenarios

inferred← citeshttps://doi.org/10.1002/iub.2934openalex-snapshot

Genomic features of lichen‐associated black fungi

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Tissue Cultivation, Preparation, and Extraction of High Molecular Weight DNA for Single-Molecule Genome Sequencing of Plant-Associated Fungi

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Endophytic Fungi: Diversity, Abundance, and Plant Growth-Promoting Attributes

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Aspergillus from Different Habitats and Their Industrial Applications

inferred← citeshttps://doi.org/10.1007/978-3-031-16503-0_6openalex-snapshot

Lichens and Their Allies Past and Present

inferred← citeshttps://doi.org/10.1007/978-3-031-28307-9_4openalex-snapshot

Phyllosphere Mycobiome: Diversity and Function

inferred← citeshttps://doi.org/10.1007/978-3-031-59567-7_3openalex-snapshot

Chemical Constituents Isolated from the Lichen Biome of Selected Species Native to North America

inferred← citeshttps://doi.org/10.1007/978-3-032-01506-8_3openalex-snapshot

Diversity and Distribution Patterns of Endolichenic Fungi

inferred← citeshttps://doi.org/10.1007/978-3-032-01506-8_4openalex-snapshot

Diversity of Endophytic Fungi of Saxicolous Lichens

inferred← citeshttps://doi.org/10.1007/978-3-032-01506-8_5openalex-snapshot

Endolichenic Fungi: The Lesser-Known Fungal Associates of Lichens

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Cyanobacteria in Terrestrial Symbiotic Systems

inferred← citeshttps://doi.org/10.1007/978-3-319-66541-2_6openalex-snapshot

Endophytism in Cupressoideae (Coniferae): A Model in Endophyte Biology and Biotechnology

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Endophytes: The Other Maize Genome

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15 The Symbiotic Phenotype of Lichen-Forming Ascomycetes and Their Endo- and Epibionts

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17 Bacteria and the Lichen Symbiosis

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6 Pezizomycotina: Dothideomycetes and Arthoniomycetes

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Lichenization: The Origins of a Fungal Life-Style

inferred← citeshttps://doi.org/10.1007/978-81-322-2235-4_6openalex-snapshot

Endolichenic Fungi in Kumaun Himalaya: A Case Study

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Architectures of Biocomplexity: Lichen-Dominated Soil Crusts and Mats

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Die Hard: Lichens

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Diversity of Fungal Endophytes in Temperate Forest Trees

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Endolichenic Fungi from Common Lichens as New Sources for Valuable Bio-active Compounds

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Introduction to Endophytic Fungi Associated with Lichens i.e. Endolichenic Fungi

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Future Perspectives and Challenges

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Modulation of Fungal Metabolome by Biotic Stress

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Lichen Symbiosis: A Systems Biology Perspective

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Soil Algae Symbioses: Raising the Curtain of an Ancient Play

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Endolichenic Fungi, an Emerging Source of Bioactive Compounds: A Pharmaceutical Perspective

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Metagenomic analysis of lichen-associated bacterial community profiling in Roccella montagnei

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7-Hydroxy-2-octenoic acid-ethyl ester mixture as an UV protectant secondary metabolite of an endolichenic fungus isolated from Menegazzia terebrata

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Community Analysis Reveals Close Affinities Between Endophytic and Endolichenic Fungi in Mosses and Lichens

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Culture-Free Survey Reveals Diverse and Distinctive Fungal Communities Associated with Developing Figs (Ficus spp.) in Panama

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Community Analyses Uncover High Diversity of Lichenicolous Fungi in Alpine Habitats

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Pervasive Effects of Wildfire on Foliar Endophyte Communities in Montane Forest Trees

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Microbial Metabolites Beneficial to Plant Hosts Across Ecosystems

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Interaction type influences ecological network structure more than local abiotic conditions: evidence from endophytic and endolichenic fungi at a continental scale

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Endolichenic fungi in lichens of Champawat district, Uttarakhand, northern India

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ITS2 metabarcoding analysis complements lichen mycobiome diversity data

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Sequence data from isolated lichen-associated melanized fungi enhance delimitation of two new lineages within Chaetothyriomycetidae

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Lichen phycobiomes as source of biodiversity for microalgae of the Stichococcus-like genera

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Molecular Characterization and Antimicrobial Activity of an Endolichenic Fungus, Aspergillus sp. Isolated from Parmelia caperata of Similipal Biosphere Reserve, India

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A microbiotic survey of lichen-associated bacteria reveals a new lineage from the Rhizobiales

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Twenty-five cultures of lichenizing fungi available for experimental studies on symbiotic systems

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The scale of symbiosis

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Metagenomic data reveal diverse fungal and algal communities associated with the lichen symbiosis

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Multidisciplinary approach to describe Trebouxia diversity within lichenized fungi Buellia zoharyi from the Canary Islands

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Phylogenetic placement of lichenicolous Phoma species in the Phaeosphaeriaceae (Pleosporales, Dothideomycetes)

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Endophytes versus biotrophic and necrotrophic pathogens—are fungal lifestyles evolutionarily stable traits?

inferred← citeshttps://doi.org/10.1007/s13225-013-0269-yopenalex-snapshot

Lichenicolous fungi of the genus Abrothallus (Dothideomycetes: Abrothallales ordo nov.) are sister to the predominantly aquatic Janhulales

inferred← citeshttps://doi.org/10.1007/s13225-015-0343-8openalex-snapshot

Extremotolerant fungi from alpine rock lichens and their phylogenetic relationships

inferred← citeshttps://doi.org/10.1007/s13225-021-00477-7openalex-snapshot

Species in lichen-forming fungi: balancing between conceptual and practical considerations, and between phenotype and phylogenomics

inferred← citeshttps://doi.org/10.1007/s13225-023-00518-3openalex-snapshot

The origin of human pathogenicity and biological interactions in Chaetothyriales

inferred← citeshttps://doi.org/10.1007/s13225-025-00550-5openalex-snapshot

Challenges and update on fungal endophytes: classification, definition, diversity, ecology, evolution and functions

inferred← citeshttps://doi.org/10.1007/s13752-019-00322-wopenalex-snapshot

Criteria for Holobionts from Community Genetics

inferred← citeshttps://doi.org/10.1007/s40009-014-0271-2openalex-snapshot

Physcia dilatata Nyl. (Lichenized Fungi, Physciaceae); A New Host of Bipolaris australiensis (M.B. Ellis) Tsuda & Ueyama from Kumaun Himalaya, India

inferred← citeshttps://doi.org/10.1007/s42535-024-00902-7openalex-snapshot

Diversity and bioactivity of endolichenic fungi isolated from three lichen species of Arunachal Pradesh, Indo-Burma belt

inferred← citeshttps://doi.org/10.1016/b978-0-12-382034-1.00007-4openalex-snapshot

Mutualistic Symbiosis Between Fungi and Autotrophs

inferred← citeshttps://doi.org/10.1016/b978-0-12-387731-4.00024-4openalex-snapshot

References

inferred← citeshttps://doi.org/10.1016/b978-0-12-800049-6.00249-3openalex-snapshot

Lichen-Forming Fungi, Diversification of

inferred← citeshttps://doi.org/10.1016/b978-0-12-813012-4.00023-1openalex-snapshot

Ediacarans, Protolichens, and Lichen-Derived Penicillium

inferred← citeshttps://doi.org/10.1016/b978-0-323-85593-8.00005-9openalex-snapshot

Nanochitosan derived from marine endolichenic fungi

inferred← citeshttps://doi.org/10.1016/b978-0-323-91202-0.00001-4openalex-snapshot

Cyanolichens: An evolutionary perspective

inferred← citeshttps://doi.org/10.1016/b978-0-323-99334-0.00048-7openalex-snapshot

Epibionts and endolichenic microbial communities

inferred← citeshttps://doi.org/10.1016/b978-0-443-15750-9.00109-9openalex-snapshot

Lichen-Forming Fungi, Diversification of

inferred← citeshttps://doi.org/10.1016/j.algal.2020.102062openalex-snapshot

Symbiosis between river and dry lands: Phycobiont dynamics on river gravel bars

inferred← citeshttps://doi.org/10.1016/j.bjbas.2015.11.006openalex-snapshot

In vitro antimicrobial potentials of endolichenic fungi isolated from thalli of Parmelia lichen against some human pathogens

inferred← citeshttps://doi.org/10.1016/j.cub.2009.04.034openalex-snapshot

Lichens

inferred← citeshttps://doi.org/10.1016/j.cub.2018.12.022openalex-snapshot

Two Basidiomycete Fungi in the Cortex of Wolf Lichens

inferred← citeshttps://doi.org/10.1016/j.cub.2022.10.041openalex-snapshot

Mycology: Metagenomes illuminate evolutionary relationships and reframe symbiotic interactions

inferred← citeshttps://doi.org/10.1016/j.cub.2022.11.014openalex-snapshot

Genome-level analyses resolve an ancient lineage of symbiotic ascomycetes

inferred← citeshttps://doi.org/10.1016/j.cub.2025.12.046openalex-snapshot

Ubiquitous occurrence of the black fungus Melanina gundecimermaniae in the lichen Umbilicaria pustulata

inferred← citeshttps://doi.org/10.1016/j.fgb.2012.05.001openalex-snapshot

Interactions between Fusarium verticillioides, Ustilago maydis, and Zea mays: An endophyte, a pathogen, and their shared plant host

inferred← citeshttps://doi.org/10.1016/j.fitote.2024.106318openalex-snapshot

New diketopiperazine dimers and 4-hydroxyphenylacetates from an endolichenic fungus Aspergillus sp.

inferred← citeshttps://doi.org/10.1016/j.funbio.2010.12.002openalex-snapshot

The obligately lichenicolous genus Lichenoconium represents a novel lineage in the Dothideomycetes

inferred← citeshttps://doi.org/10.1016/j.funbio.2011.12.010openalex-snapshot

Patterns of fungal diversity in New Zealand Nothofagus forests

inferred← citeshttps://doi.org/10.1016/j.funbio.2012.12.005openalex-snapshot

Geographic locality greatly influences fungal endophyte communities in Cephalotaxus harringtonia

inferred← citeshttps://doi.org/10.1016/j.funbio.2013.05.003openalex-snapshot

Bacterial epibionts and endolichenic actinobacteria and fungi in the Lower Devonian lichen Chlorolichenomycites salopensis

inferred← citeshttps://doi.org/10.1016/j.funbio.2015.06.005openalex-snapshot

The phylogenetic analysis of fungi associated with lichenized ascomycete genus Bryoria reveals new lineages in the Tremellales including a new species Tremella huuskonenii hyperparasitic on Phacopsis huuskonenii

inferred← citeshttps://doi.org/10.1016/j.funbio.2019.05.006openalex-snapshot

The first survey of Cystobasidiomycete yeasts in the lichen genus Cladonia; with the description of Lichenozyma pisutiana gen. nov., sp. nov.

inferred← citeshttps://doi.org/10.1016/j.funbio.2022.07.004openalex-snapshot

The yeast lichenosphere: high diversity of basidiomycetes from the lichens Tephromela atra and Rhizoplaca melanophthalma

inferred← citeshttps://doi.org/10.1016/j.funbio.2025.101563openalex-snapshot

Diversity of tremellalean Pertusaria-associated fungi in Norway and the role of secondary metabolites in host specificity

inferred← citeshttps://doi.org/10.1016/j.funeco.2010.09.007openalex-snapshot

Genetically-based trait variation within a foundation tree species influences a dominant bark lichen

inferred← citeshttps://doi.org/10.1016/j.funeco.2013.06.003openalex-snapshot

Factors influencing communities of foliar fungal endophytes in riparian woody plants

inferred← citeshttps://doi.org/10.1016/j.funeco.2013.12.005openalex-snapshot

Communities of fungal endophytes in tropical forest grasses: highly diverse host- and habitat generalists characterized by strong spatial structure

inferred← citeshttps://doi.org/10.1016/j.funeco.2016.02.004openalex-snapshot

Fungicolous xylariaceous fungi in coralloid basidiomata

inferred← citeshttps://doi.org/10.1016/j.funeco.2018.05.011openalex-snapshot

Lives within lives: Hidden fungal biodiversity and the importance of conservation

inferred← citeshttps://doi.org/10.1016/j.funeco.2018.08.008openalex-snapshot

Context-dependent and variable effects of endohyphal bacteria on interactions between fungi and seeds

inferred← citeshttps://doi.org/10.1016/j.funeco.2019.100866openalex-snapshot

Lichenicolous fungi are more specialized than their lichen hosts in primeval forest ecosystems, Białowieża Forest, northeast Poland

inferred← citeshttps://doi.org/10.1016/j.funeco.2021.101043openalex-snapshot

Response of fungal endophyte communities within Andropogon gerardii (Big bluestem) to nutrient addition and herbivore exclusion

inferred← citeshttps://doi.org/10.1016/j.funeco.2022.101221openalex-snapshot

The potential saprotrophic capacity of foliar endophytic fungi from Quercus gambelii

inferred← citeshttps://doi.org/10.1016/j.funeco.2024.101331openalex-snapshot

Highly heterogeneous mycobiota shape fungal diversity in two globally distributed lichens

inferred← citeshttps://doi.org/10.1016/j.funeco.2026.101521openalex-snapshot

Fungi-substrate association patterns in boreal forests

inferred← citeshttps://doi.org/10.1016/j.jaridenv.2010.05.033openalex-snapshot

Fungal communities of lichen-dominated biological soil crusts: Diversity, relative microbial biomass, and their relationship to disturbance and crust cover

inferred← citeshttps://doi.org/10.1016/j.jksus.2021.101579openalex-snapshot

Decolourization of malachite green dye by endolichenic fungi from the lichen Usnea sp.: A novel study on their dye removal potential

inferred← citeshttps://doi.org/10.1016/j.lwt.2025.118645openalex-snapshot

Fungal community succession in the fermentation of black and oolong teas

inferred← citeshttps://doi.org/10.1016/j.mib.2024.102435openalex-snapshot

Coevolution of a generalist pathogen with many hosts: the case of the amphibian chytrid Batrachochytrium dendrobatidis

inferred← citeshttps://doi.org/10.1016/j.micres.2017.10.005openalex-snapshot

Endophytism or saprophytism: Decoding the lifestyle transition of the generalist fungus Phomopsis liquidambari

inferred← citeshttps://doi.org/10.1016/j.micres.2018.03.006openalex-snapshot

Fungal communities associated with Evernia prunastri, Ramalina fastigiata and Pleurosticta acetabulum: Three epiphytic lichens potentially active against Candida biofilms

inferred← citeshttps://doi.org/10.1016/j.myc.2019.07.004openalex-snapshot

The effect of surface sterilization and the type of sterilizer on the genus composition of lichen-inhabiting fungi with notes on some frequently isolated genera

inferred← citeshttps://doi.org/10.1016/j.mycres.2008.09.002openalex-snapshot

Towards a new classification of the Arthoniales (Ascomycota) based on a three-gene phylogeny focussing on the genus Opegrapha

inferred← citeshttps://doi.org/10.1016/j.pbi.2018.02.007openalex-snapshot

Relative symbiont input and the lichen symbiotic outcome

inferred← citeshttps://doi.org/10.1016/j.shpsc.2020.101340openalex-snapshot

Ontology and values anchor indigenous and grey nomenclatures: a case study in lichen naming practices among the Samí, Sherpa, Scots, and Okanagan

inferred← citeshttps://doi.org/10.1016/j.simyco.2016.11.008openalex-snapshot

Wood staining fungi revealed taxonomic novelties in Pezizomycotina: New order Superstratomycetales and new species Cyanodermella oleoligni

inferred← citeshttps://doi.org/10.1016/j.soilbio.2012.07.023openalex-snapshot

Diversity of free-living and lichenized fungal communities in biological soil crusts of the Sultanate of Oman and their role in improving soil properties

inferred← citeshttps://doi.org/10.1016/j.tetlet.2017.03.052openalex-snapshot

Secondary metabolites of the lichen-associated fungus Apiospora montagnei

inferred← citeshttps://doi.org/10.1016/j.tim.2009.08.001openalex-snapshot

The search for the fungal tree of life

inferred← citeshttps://doi.org/10.1016/j.tree.2022.03.004openalex-snapshot

A call to reconceptualize lichen symbioses

inferred← citeshttps://doi.org/10.1016/j.ympev.2011.05.012openalex-snapshot

Species delimitation in taxonomically difficult lichen-forming fungi: An example from morphologically and chemically diverse Xanthoparmelia (Parmeliaceae) in North America

inferred← citeshttps://doi.org/10.1016/j.ympev.2012.06.019openalex-snapshot

Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes

inferred← citeshttps://doi.org/10.1016/j.ympev.2014.04.003openalex-snapshot

A multigene phylogenetic synthesis for the class Lecanoromycetes (Ascomycota): 1307 fungi representing 1139 infrageneric taxa, 317 genera and 66 families

inferred← citeshttps://doi.org/10.1016/j.ympev.2015.01.008openalex-snapshot

Phylogenetic analyses of eurotiomycetous endophytes reveal their close affinities to Chaetothyriales, Eurotiales, and a new order – Phaeomoniellales

inferred← citeshttps://doi.org/10.1016/j.ympev.2016.02.010openalex-snapshot

Contributions of North American endophytes to the phylogeny, ecology, and taxonomy of Xylariaceae (Sordariomycetes, Ascomycota)

inferred← citeshttps://doi.org/10.1016/j.ympev.2016.03.030openalex-snapshot

Cryptic diversity and symbiont interactions in rock-posy lichens

inferred← citeshttps://doi.org/10.1016/j.ympev.2020.106821openalex-snapshot

Formally described species woefully underrepresent phylogenetic diversity in the common lichen photobiont genus Trebouxia (Trebouxiophyceae, Chlorophyta): An impetus for developing an integrated taxonomy

inferred← citeshttps://doi.org/10.1016/j.ympev.2021.107100openalex-snapshot

Exploring syntenic conservation across genomes for phylogenetic studies of organisms subjected to horizontal gene transfers: A case study with Cyanobacteria and cyanolichens

inferred← citeshttps://doi.org/10.1016/j.ympev.2023.107944openalex-snapshot

Paraphyly and cryptic diversity unveils unexpected challenges in the “naked lichens” (Calvitimela, Lecanoromycetes, Ascomycota)

inferred← citeshttps://doi.org/10.1016/j.ympev.2025.108407openalex-snapshot

Speciation continuum in non-model organisms: Revisiting the species-pair concept in lichens

inferred← citeshttps://doi.org/10.1017/s0024282909990752openalex-snapshot

Fungal composition of lichen thalli assessed by single strand conformation polymorphism

inferred← citeshttps://doi.org/10.1017/s0024282911000648openalex-snapshot

A preliminary survey of lichen associated eukaryotes using pyrosequencing

inferred← citeshttps://doi.org/10.1017/s0024282912000424openalex-snapshot

DNA-based identification of lichen-forming fungi: can publicly available sequence databases aid in lichen diversity inventories of Mount Cameroon (West Africa)?

inferred← citeshttps://doi.org/10.1017/s0024282915000341openalex-snapshot

Molecular and morphological diversity in photobionts associated withMicareas. str. (Lecanorales, Ascomycota)

inferred← citeshttps://doi.org/10.1017/s0024282916000335openalex-snapshot

Is asexual reproduction an evolutionary dead end in lichens?

inferred← citeshttps://doi.org/10.1017/s0024282917000664openalex-snapshot

A multi-tool approach to assess microalgal diversity in lichens: isolation, Sanger sequencing, HTS and ultrastructural correlations

inferred← citeshttps://doi.org/10.1017/s0024282918000208openalex-snapshot

Untangling the hidden intrathalline microalgal diversity inParmotrema pseudotinctorum:Trebouxia crespoanasp. nov.

inferred← citeshttps://doi.org/10.1017/s0024282919000483openalex-snapshot

Polyol-assimilation capacities of lichen-inhabiting fungi

inferred← citeshttps://doi.org/10.1017/s0024282920000225openalex-snapshot

High levels of endemism and local differentiation in the fungal and algal symbionts of saxicolous lecideoid lichens along a latitudinal gradient in southern South America

inferred← citeshttps://doi.org/10.1017/s0266467416000535openalex-snapshot

Community structure of fern-affiliated endophytes in three neotropical forests

inferred← citeshttps://doi.org/10.1021/acs.jnatprod.2c00991openalex-snapshot

A Modular Strategy for the Synthesis of Dothideopyrones E and F, Secondary Metabolites from an Endolichenic Fungus

inferred← citeshttps://doi.org/10.1038/ismej.2011.193openalex-snapshot

Coral-associated marine fungi form novel lineages and heterogeneous assemblages

inferred← citeshttps://doi.org/10.1038/s41429-018-0058-7openalex-snapshot

Anti-inflammatory phomalichenones from an endolichenic fungus Phoma sp.

inferred← citeshttps://doi.org/10.1038/s41467-018-07849-9openalex-snapshot

Contemporaneous radiations of fungi and plants linked to symbiosis

inferred← citeshttps://doi.org/10.1038/s41559-019-0975-2openalex-snapshot

Host availability drives distributions of fungal endophytes in the imperilled boreal realm

inferred← citeshttps://doi.org/10.1038/s41598-020-70683-xopenalex-snapshot

Changes in the core endophytic mycobiome of carrot taproots in response to crop management and genotype

inferred← citeshttps://doi.org/10.1038/s41598-020-71046-2openalex-snapshot

Symbiotic microalgal diversity within lichenicolous lichens and crustose hosts on Iberian Peninsula gypsum biocrusts

inferred← citeshttps://doi.org/10.1038/s41598-026-56022-6openalex-snapshot

Molecular phylogeny and ecological diversity of endolichenic fungi inhabiting Acarospora schleicheri (Ach.) A. Massal, isolated from a Chilean Andean zone

inferred← citeshttps://doi.org/10.1038/s42003-021-01826-7openalex-snapshot

Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale

inferred← citeshttps://doi.org/10.1038/s43705-021-00060-wopenalex-snapshot

Cyanolichen microbiome contains novel viruses that encode genes to promote microbial metabolism

inferred← citeshttps://doi.org/10.1038/srep10028openalex-snapshot

A Tale of Two Hyper-diversities: Diversification dynamics of the two largest families of lichenized fungi

inferred← citeshttps://doi.org/10.1038/srep13624openalex-snapshot

Friend or foe: differential responses of rice to invasion by mutualistic or pathogenic fungi revealed by RNAseq and metabolite profiling

inferred← citeshttps://doi.org/10.1038/srep14850openalex-snapshot

Diversity and distribution of lichen-associated fungi in the Ny-Ålesund Region (Svalbard, High Arctic) as revealed by 454 pyrosequencing

inferred← citeshttps://doi.org/10.1055/a-1045-1989openalex-snapshot

Endolichenic fungal diversity associated with some lichens of the Western Ghats

inferred← citeshttps://doi.org/10.1073/pnas.1209872109openalex-snapshot

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

inferred← citeshttps://doi.org/10.1073/pnas.2001913117openalex-snapshot

The macroevolutionary dynamics of symbiotic and phenotypic diversification in lichens

inferred← citeshttps://doi.org/10.1080/00275514.2017.1413891openalex-snapshot

Lichenicolous species of Hainesia belong to Phacidiales (Leotiomycetes) and are included in an extended concept of Epithamnolia

inferred← citeshttps://doi.org/10.1080/00275514.2018.1457349openalex-snapshot

Xylaria karyophthora : a new seed-inhabiting fungus of Greenheart from Guyana

inferred← citeshttps://doi.org/10.1080/00275514.2020.1816761openalex-snapshot

Beyond the extremes: Rocks as ultimate refuge for fungi in drylands

inferred← citeshttps://doi.org/10.1080/00275514.2024.2383114openalex-snapshot

Phylogenetic analyses show the Select Agent Coniothyrium glycines represents a single species that has significant morphological and genetic variation

inferred← citeshttps://doi.org/10.1080/09670262.2013.873143openalex-snapshot

Lichen-symbiotic cyanobacteria associated withPeltigerahave an alternative vanadium-dependent nitrogen fixation system

inferred← citeshttps://doi.org/10.1080/10286020.2017.1283311openalex-snapshot

Two new α-pyrone derivatives from an endolichenic fungus Tolypocladium sp.

inferred← citeshttps://doi.org/10.1080/1040841x.2025.2556931openalex-snapshot

Recent biotechnological advances in bioprospecting secondary metabolites from endolichenic fungi for drug discovery applications

inferred← citeshttps://doi.org/10.1080/12298093.2022.2040112openalex-snapshot

Endolichenic Fungal Community Analysis by Pure Culture Isolation and Metabarcoding: A Case Study of Parmotrema tinctorum

inferred← citeshttps://doi.org/10.1080/12298093.2025.2519854openalex-snapshot

New Tricoderma Species and Six Unrecorded Species of Endolichenic Fungi Isolated from Lichens

inferred← citeshttps://doi.org/10.1080/14786419.2018.1544982openalex-snapshot

Antimicrobial secondary metabolites of an endolichenic Aspergillus niger isolated from lichen thallus of Parmotrema ravum

inferred← citeshttps://doi.org/10.1080/21501203.2017.1352048openalex-snapshot

Endolichenic fungi: the lesser known fungal associates of lichens

inferred← citeshttps://doi.org/10.1086/694334openalex-snapshot

Coevolution between Mutualists and Parasites in Symbiotic Communities May Lead to the Evolution of Lower Virulence

inferred← citeshttps://doi.org/10.1093/bioinformatics/btw808openalex-snapshot

T-BAS: Tree-Based Alignment Selector toolkit for phylogenetic-based placement, alignment downloads and metadata visualization: an example with the Pezizomycotina tree of life

inferred← citeshttps://doi.org/10.1093/biosci/biu136openalex-snapshot

Lichen Biodiversity under Threat from Sea-Level Rise in the Atlantic Coastal Plain

inferred← citeshttps://doi.org/10.1093/femsle/fny115openalex-snapshot

Enforced fungal-algal symbioses in alginate spheres

inferred← citeshttps://doi.org/10.1093/jhered/esad052openalex-snapshot

The reference genome assembly of the bright cobblestone lichen, Acarospora socialis

inferred← citeshttps://doi.org/10.1093/jpe/rtaf094openalex-snapshot

Effects of alpine environments on wheat mycobiomes: diversity, composition and functional adaptations

inferred← citeshttps://doi.org/10.1093/molbev/msac085openalex-snapshot

Lifestyle Transitions in Fusarioid Fungi are Frequent and Lack Clear Genomic Signatures

inferred← citeshttps://doi.org/10.1093/obo/9780199830060-0164openalex-snapshot

Lichen Ecology

inferred← citeshttps://doi.org/10.1098/rstb.2015.0336openalex-snapshot

Scaling up discovery of hidden diversity in fungi: impacts of barcoding approaches

inferred← citeshttps://doi.org/10.1098/rstb.2017.0395openalex-snapshot

A novel proof of concept for capturing the diversity of endophytic fungi preserved in herbarium specimens

inferred← citeshttps://doi.org/10.1099/ijsem.0.005003openalex-snapshot

Coniochaeta elegans sp. nov., Coniochaeta montana sp. nov. and Coniochaeta nivea sp. nov., three new species of endophytes with distinctive morphology and functional traits

inferred← citeshttps://doi.org/10.1099/mic.0.001153openalex-snapshot

Alternaria alternata as endophyte and pathogen

inferred← citeshttps://doi.org/10.1101/2024.01.04.574211openalex-snapshot

Molecular Characterization of Tephromela atra and Tephromela grumosa from Bozdag Mountain Based on ITS1 rDNA Sequences Analysis

inferred← citeshttps://doi.org/10.1101/2024.05.29.596524openalex-snapshot

Factors shaping the assembly of lichen holobionts in a tropical lichen community

inferred← citeshttps://doi.org/10.1111/1365-2435.12166openalex-snapshot

Defensive mutualisms: do microbial interactions within hosts drive the evolution of defensive traits?

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