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When Do Phylogenetic Mixture Models Mimic Other Phylogenetic Models?

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

inferredcites →https://doi.org/10.1007/bf01890075openalex-snapshot

Invariants of phylogenies in a simple case with discrete states

inferredcites →https://doi.org/10.1007/bf02459467openalex-snapshot

Links between maximum likelihood and maximum parsimony under a simple model of site substitution

inferredcites →https://doi.org/10.1007/s11538-007-9293-yopenalex-snapshot

Mixed-up Trees: the Structure of Phylogenetic Mixtures

inferredcites →https://doi.org/10.1007/s11538-011-9672-2openalex-snapshot

Identifiability of Large Phylogenetic Mixture Models

inferredcites →https://doi.org/10.1016/j.jtbi.2008.10.010openalex-snapshot

A basic limitation on inferring phylogenies by pairwise sequence comparisons

inferredcites →https://doi.org/10.1017/cbo9780511610684.023openalex-snapshot

Tree Construction using Singular Value Decomposition

inferredcites →https://doi.org/10.1038/nature02917openalex-snapshot

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

inferredcites →https://doi.org/10.1080/10635150490468675openalex-snapshot

A Phylogenetic Mixture Model for Detecting Pattern-Heterogeneity in Gene Sequence or Character-State Data

inferredcites →https://doi.org/10.1080/10635150701245388openalex-snapshot

Pitfalls of Heterogeneous Processes for Phylogenetic Reconstruction

inferredcites →https://doi.org/10.1080/10635150701627304openalex-snapshot

Phylogenetic Mixtures on a Single Tree Can Mimic a Tree of Another Topology

inferredcites →https://doi.org/10.1080/10635150701670569openalex-snapshot

A Nonparametric Method for Accommodating and Testing Across-Site Rate Variation

inferredcites →https://doi.org/10.1089/cmb.1994.1.153openalex-snapshot

Reconstructing Trees When Sequence Sites Evolve at Variable Rates

inferredcites →https://doi.org/10.1089/cmb.2006.0126openalex-snapshot

Phylogeny of Mixture Models: Robustness of Maximum Likelihood and Non-Identifiable Distributions

inferredcites →https://doi.org/10.1089/cmb.2006.13.1101openalex-snapshot

The Identifiability of Tree Topology for Phylogenetic Models, Including Covarion and Mixture Models

inferredcites →https://doi.org/10.1093/bioinformatics/btg180openalex-snapshot

MrBayes 3: Bayesian phylogenetic inference under mixed models

inferredcites →https://doi.org/10.1093/oso/9780198566106.003.0005openalex-snapshot

Mixture Models in Phylogenetic Inference

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a025991openalex-snapshot

Inferring pattern and process: maximum-likelihood implementation of a nonhomogeneous model of DNA sequence evolution for phylogenetic analysis

inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040220openalex-snapshot

On the use of nucleic acid sequences to infer early branchings in the tree of life.

inferredcites →https://doi.org/10.1093/sysbio/44.1.17openalex-snapshot

Performance of Phylogenetic Methods in Simulation

inferredcites →https://doi.org/10.1093/sysbio/syq069openalex-snapshot

Can We Avoid “SIN” in the House of “No Common Mechanism”?

inferredcites →https://doi.org/10.1093/sysbio/syr023openalex-snapshot

On Rogers' Proof of Identifiability for the GTR + Γ + I Model

inferredcites →https://doi.org/10.1093/sysbio/syr093openalex-snapshot

Generalized Mixture Models for Molecular Phylogenetic Estimation

inferredcites →https://doi.org/10.1098/rstb.2008.0180openalex-snapshot

Phylogenetic mixture models for proteins

inferredcites →https://doi.org/10.1109/tcbb.2010.79openalex-snapshot

Identifiability of Two-Tree Mixtures for Group-Based Models

inferredcites →https://doi.org/10.1126/science.1115493openalex-snapshot

Phylogenetic MCMC Algorithms Are Misleading on Mixtures of Trees

inferredcites →https://doi.org/10.1186/1471-2148-5-2openalex-snapshot

Rooting a phylogenetic tree with nonreversible substitution models

inferredcites →https://doi.org/10.1186/1471-2148-8-331openalex-snapshot

A class frequency mixture model that adjusts for site-specific amino acid frequencies and improves inference of protein phylogeny

inferredcites →https://doi.org/10.1214/105051600000000538openalex-snapshot

Limitations of Markov chain Monte Carlo algorithms for Bayesian inference of phylogeny

inferredcites →https://doi.org/10.1214/aos/1176349030openalex-snapshot

Invariants of Some Probability Models Used in Phylogenetic Inference

inferredcites →https://doi.org/10.1239/aap/1208358894openalex-snapshot

Identifiability of a Markovian model of molecular evolution with gamma-distributed rates

inferredcites →https://doi.org/10.2307/2992397openalex-snapshot

The Relationship Between Simple Evolutionary Tree Models and Observable Sequence Data

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

inferred← citeshttps://doi.org/10.5281/zenodo.23165616zenodo-depositor-declared

inferred← citeshttps://doi.org/10.1007/978-1-4471-5298-9_6openalex-snapshot

Large-Scale Multiple Sequence Alignment and Phylogeny Estimation

inferred← citeshttps://doi.org/10.1007/s00285-016-1055-8openalex-snapshot

Phylogenetic mixtures and linear invariants for equal input models

inferred← citeshttps://doi.org/10.1007/s11786-023-00575-6openalex-snapshot

Syntactic Structures and the General Markov Models

inferred← citeshttps://doi.org/10.1016/j.aam.2014.12.003openalex-snapshot

Identifiability of 3-class Jukes–Cantor mixtures

inferred← citeshttps://doi.org/10.1093/molbev/msu039openalex-snapshot

Tests for Two Trees Using Likelihood Methods

inferred← citeshttps://doi.org/10.1093/sysbio/syae008openalex-snapshot

MAST: Phylogenetic Inference with Mixtures Across Sites and Trees

inferred← citeshttps://doi.org/10.1093/sysbio/syu099openalex-snapshot

Bayesian Long Branch Attraction Bias and Corrections

inferred← citeshttps://doi.org/10.1093/sysbio/syw097openalex-snapshot

Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent

inferred← citeshttps://doi.org/10.1101/2025.04.18.649493openalex-snapshot

Identifiability of Phylogenetic Level-2 Networks under the Jukes-Cantor Model

inferred← citeshttps://doi.org/10.1126/sciadv.ade4973openalex-snapshot

An excavate root for the eukaryote tree of life

inferred← citeshttps://doi.org/10.1137/120901568openalex-snapshot

A Semialgebraic Description of the General Markov Model on Phylogenetic Trees

inferred← citeshttps://doi.org/10.2140/jsag.2021.11.1openalex-snapshot

Phylogenetic trees

inferred← citeshttps://doi.org/10.4169/amer.math.monthly.121.09.771openalex-snapshot

Tracing Evolutionary Links between Species

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