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Morphological Clocks in Paleontology, and a Mid-Cretaceous Origin of Crown Aves

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Living Dinosaurs
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Calculating the Tempo of Morphological Evolution: Rates of Discrete Character Change in a Phylogenetic Context
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Rates of Phenotypic and Genomic Evolution during the Cambrian Explosion
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Models and Methods for Analyzing Phenotypic Evolution in Lineages and Clades
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Definitive fossil evidence for the extant avian radiation in the Cretaceous
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An Archaeopteryx-like theropod from China and the origin of Avialae
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The global diversity of birds in space and time
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A Jurassic avialan dinosaur from China resolves the early phylogenetic history of birds
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Mass extinction of birds at the Cretaceous–Paleogene (K–Pg) boundary
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Bayes Factors
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Tempo and mode of modern bird evolution observed with large-scale taxonomic sampling
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The osteology ofMagnosaurus nethercombensis(Dinosauria, Theropoda) from the Bajocian (Middle Jurassic) of the United Kingdom and a re-examination of the oldest records of tetanurans
inferredcites →https://doi.org/10.1080/14772019.2012.690455openalex-snapshot
A redescription of Chaoyangia beishanensis (Aves) and a comprehensive phylogeny of Mesozoic birds
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Testing Spatiotemporal Hypothesis of Bacterial Evolution Using Methicillin-Resistant Staphylococcus aureus ST239 Genome-wide Data within a Bayesian Framework
inferredcites →https://doi.org/10.1093/molbev/msr227openalex-snapshot
Expansion Dating: Calibrating Molecular Clocks in Marine Species from Expansions onto the Sunda Shelf Following the Last Glacial Maximum
inferredcites →https://doi.org/10.1093/sysbio/syq099openalex-snapshot
Bayesian Estimation of Substitution Rates from Ancient DNA Sequences with Low Information Content
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Divergence Time Estimation Using Fossils as Terminal Taxa and the Origins of Lissamphibia
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1093/sysbio/sys058openalex-snapshot
A Total-Evidence Approach to Dating with Fossils, Applied to the Early Radiation of the Hymenoptera
inferredcites →https://doi.org/10.1093/sysbio/sys078openalex-snapshot
Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice
inferredcites →https://doi.org/10.1093/sysbio/syu015openalex-snapshot
Inferring Heterogeneous Evolutionary Processes Through Time: from Sequence Substitution to Phylogeography
inferredcites →https://doi.org/10.1098/rsbl.2011.0884openalex-snapshot
Likelihood reinstates Archaeopteryx as a primitive bird
inferredcites →https://doi.org/10.1098/rspb.2012.1630openalex-snapshot
Multiple nuclear genes and retroposons support vicariance and dispersal of the palaeognaths, and an Early Cretaceous origin of modern birds
inferredcites →https://doi.org/10.1111/j.1475-4983.2009.00887.xopenalex-snapshot
THE AFFINITIES OF THE ENIGMATIC DINOSAUR ESHANOSAURUS DEGUCHIIANUS FROM THE EARLY JURASSIC OF YUNNAN PROVINCE, PEOPLE’S REPUBLIC OF CHINA
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paleotree: an R package for paleontological and phylogenetic analyses of evolution
inferredcites →https://doi.org/10.1126/science.1229237openalex-snapshot
The Placental Mammal Ancestor and the Post–K-Pg Radiation of Placentals
inferredcites →https://doi.org/10.1126/science.275.5303.1109openalex-snapshot
Mass Survival of Birds Across the Cretaceous- Tertiary Boundary: Molecular Evidence
inferredcites →https://doi.org/10.1146/annurev.ecolsys.33.010802.150517openalex-snapshot
The Mesozoic Radiation of Birds
inferredcites →https://doi.org/10.1371/journal.pone.0014642openalex-snapshot
Didactyl Tracks of Paravian Theropods (Maniraptora) from the ?Middle Jurassic of Africa
inferredcites →https://doi.org/10.1371/journal.pone.0039056openalex-snapshot
The Completeness of the Fossil Record of Mesozoic Birds: Implications for Early Avian Evolution
inferredcites →https://doi.org/10.5281/zenodo.16171435openalex-snapshot
Saurischian monophyly and the origin of birds

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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An advanced, new long-legged bird from the Early Cretaceous of the Jehol Group (northeastern China): insights into the temporal divergence of modern birds
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Evidence for a Mid-Jurassic Adaptive Radiation in Mammals
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The evolutionary relationships and age of Homo naledi: An assessment using dated Bayesian phylogenetic methods
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Histories of molecules: Reconciling the past
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Dating Tips for Divergence-Time Estimation
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A molecular genetic time scale demonstrates Cretaceous origins and multiple diversification rate shifts within the order Galliformes (Aves)
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Tip-dating and the origin of Telluraves
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Understanding the Tripartite Approach to Bayesian Divergence Time Estimation
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Bayesian estimation of fossil phylogenies and the evolution of early to middle Paleozoic crinoids (Echinodermata)
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Selecting and averaging relaxed clock models in Bayesian tip dating of Mesozoic birds
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Dinosaur biodiversity declined well before the asteroid impact, influenced by ecological and environmental pressures
inferred← citeshttps://doi.org/10.1038/s41586-025-09232-3openalex-snapshot
Reorganization of the theropod wrist preceded the origin of avian flight
inferred← citeshttps://doi.org/10.1071/sb16021openalex-snapshot
Jurassic primates, immobile ducks and other oddities: a reply to Heads’ review of The Monkey’s Voyage
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A complete and dynamic tree of birds
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Nasutoceratops titusi (Ornithischia, Ceratopsidae), a basal centrosaurine ceratopsid from the Kaiparowits Formation, southern Utah
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The second titanosaurian (Dinosauria: Sauropoda) from the middle Cretaceous Galula Formation, southwestern Tanzania, with remarks on African titanosaurian diversity
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Phylogenetic placement of Adalatherium hui (Mammalia, Gondwanatheria) from the Late Cretaceous of Madagascar: implications for allotherian relationships
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High evolutionary rates and the origin of the Rosso Ammonitico Veronese Formation (Middle-Upper Jurassic of Italy) reptiles
inferred← citeshttps://doi.org/10.1080/14772019.2019.1655496openalex-snapshot
Two new species of fossil Paratydeidae (Acari: Trombidiformes) from the late Eocene amber highlight ultraslow morphological evolution in a soil-inhabiting arthropod lineage
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The Miocene deep-water echinoids Toxopatagus italicus and Neoholaster albensis gen. and sp. nov., implications for holasteroid phylogeny and palaeoecology
inferred← citeshttps://doi.org/10.1093/aesa/saaa063openalex-snapshot
Evolutionary and Ecological Pressures Shaping Social Wasps Collective Defenses
inferred← citeshttps://doi.org/10.1093/icb/icx039openalex-snapshot
Metamorphosis Is Ancestral for Crown Euarthropods, and Evolved in the Cambrian or Earlier
inferred← citeshttps://doi.org/10.1093/icb/icx061openalex-snapshot
Inferring Arthropod Phylogeny: Fossils and their Interaction with Other Data Sources
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Bayesian Tip-Dated Phylogenetics in Paleontology: Topological Effects and Stratigraphic Fit
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Investigating Morphological Complexes Using Informational Dissonance and Bayes Factors: A Case Study in Corbiculate Bees
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Handling Logical Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated and Empirical Data
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Practical Guide and Review of Fossil Tip-Dating in Phylogenetics
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But the Clock, Tick-Tock: An Empirical Case Study Highlights the Preeminence of Relaxed Clock Models in Total-Evidence Dating
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Phylogenetic Paradigm Shifts in Early Amniote Evolution
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A Covarion Model for Phylogenetic Estimation Using Discrete Morphological Data Sets
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Taxonomy and Phylogeny Can Yield Comparable Results in Comparative Paleontological Analyses
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Bayesian Total-Evidence Dating Reveals the Recent Crown Radiation of Penguins
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Novel Approaches for Phylogenetic Inference from Morphological Data and Total-Evidence Dating in Squamate Reptiles (Lizards, Snakes, and Amphisbaenians)
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Bayesian Morphological Clock Methods Resurrect Placoderm Monophyly and Reveal Rapid Early Evolution in Jawed Vertebrates
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Use of Continuous Traits Can Improve Morphological Phylogenetics
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Homoplasy-Based Partitioning Outperforms Alternatives in Bayesian Analysis of Discrete Morphological Data
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Craniodental and Postcranial Characters of Non-Avian Dinosauria Often Imply Different Trees
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Phylogeny indicates polyphyly in Cnodocentron (Trichoptera: Xiphocentronidae): biogeography and revision of New World species ( Caenocentron )
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Total-evidence dating and morphological partitioning: a novel approach to understand the phylogeny and biogeography of augochlorine bees (Hymenoptera: Apoidea)
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Reassessing the phylogeny and divergence times of sloths (Mammalia: Pilosa: Folivora), exploring alternative morphological partitioning and dating models
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Time-calibrated models support congruency between Cretaceous continental rifting and titanosaurian evolutionary history
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Exceptional fossils from Peru and an integrative phylogeny reconcile the evolutionary timing and mode of Gavialis and its kin
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Bayesian tip dating reveals heterogeneous morphological clocks in Mesozoic birds
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Calibration uncertainty in molecular dating analyses: there is no substitute for the prior evaluation of time priors
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Ancient dates or accelerated rates? Morphological clocks and the antiquity of placental mammals
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Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships
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Tip dating and Bayes factors provide insight into the divergences of crown bird clades across the end-Cretaceous mass extinction
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The evolution of methods for establishing evolutionary timescales
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Tooth size apportionment, Bayesian inference, and the phylogeny of Homo naledi
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Interpreting the fossil record and the origination of birds
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Microstructural and crystallographic evolution of palaeognath (Aves) eggshells
inferred← citeshttps://doi.org/10.1101/2022.08.25.505200openalex-snapshot
Inaccurate fossil placement does not compromise tip-dated divergence times
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Profile of a flower: How rates of morphological evolution drive floral diversification in Ericales
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But the clock, tick-tock: the preeminence of relaxed clock models in total-evidence dated phylogenetics
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Historical Contingency Shapes Toxin Resistance in a Specialist Avian Predator
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Mismatch of the morphology model is mostly unproblematic in total-evidence dating: insights from an extensive simulation study
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A new method for testing evolutionary rate variation and shifts in phenotypic evolution
inferred← citeshttps://doi.org/10.1111/2041-210x.14166openalex-snapshot
Why should we compare morphological and molecular disparity?
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The age of insects and the revival of the minimum age tree
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Positive phenotypic selection inferred from phylogenies
inferred← citeshttps://doi.org/10.1111/bij.12710openalex-snapshot
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Whole‐body endothermy: ancient, homologous and widespread among the ancestors of mammals, birds and crocodylians
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Dasycerine rove beetles: Cretaceous diversification, phylogeny and historical biogeography (Coleoptera: Staphylinidae: Dasycerinae)
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Cladistic estimates of evolutionary rates focused on palaeontological datasets using TNT
inferred← citeshttps://doi.org/10.1111/evo.12693openalex-snapshot
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inferred← citeshttps://doi.org/10.1111/evo.12907openalex-snapshot
Dating placentalia: Morphological clocks fail to close the molecular fossil gap
inferred← citeshttps://doi.org/10.1111/jzo.12113openalex-snapshot
The fossil record of bird behaviour
inferred← citeshttps://doi.org/10.1111/pala.12142openalex-snapshot
strap: an R package for plotting phylogenies against stratigraphy and assessing their stratigraphic congruence
inferred← citeshttps://doi.org/10.1111/pala.12680openalex-snapshot
Inaccurate fossil placement does not compromise tip‐dated divergence times
inferred← citeshttps://doi.org/10.1111/pala.70057openalex-snapshot
The early origin of Iguanodontia: new insights into the macroevolution, diversity and biogeography of the clade
inferred← citeshttps://doi.org/10.1111/zsc.70041openalex-snapshot
Evaluating Bayesian Morphological Clocks for Estimating a Dated Phylogeny in a Relict and Fossil‐Rich Family of Wasps (Hymenoptera, Chrysidoidea)
inferred← citeshttps://doi.org/10.1126/science.1252243openalex-snapshot
Sustained miniaturization and anatomical innovation in the dinosaurian ancestors of birds
inferred← citeshttps://doi.org/10.1126/science.1253451openalex-snapshot
Whole-genome analyses resolve early branches in the tree of life of modern birds
inferred← citeshttps://doi.org/10.1126/science.1254449openalex-snapshot
Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs
inferred← citeshttps://doi.org/10.1126/science.aab1578openalex-snapshot
Response to Comment on “Whole-genome analyses resolve early branches in the tree of life of modern birds”
inferred← citeshttps://doi.org/10.1126/science.adc8714openalex-snapshot
Developmental strategies underlying gigantism and miniaturization in non-avialan theropod dinosaurs
inferred← citeshttps://doi.org/10.1130/abs/2022am-379676openalex-snapshot
INACCURATE FOSSIL PLACEMENT DOES NOT COMPROMISE TIP-DATED DIVERGENCE TIMES
inferred← citeshttps://doi.org/10.1146/annurev-animal-090414-014900openalex-snapshot
The Genome 10K Project: A Way Forward
inferred← citeshttps://doi.org/10.1186/s12862-021-01798-6openalex-snapshot
Molecular and morphological clocks for estimating evolutionary divergence times
inferred← citeshttps://doi.org/10.1186/s12915-024-02053-2openalex-snapshot
Bayesian tip-dated timeline for diversification and major biogeographic events in Muroidea (Rodentia), the largest mammalian radiation
inferred← citeshttps://doi.org/10.1206/0003-0090.478.1.1openalex-snapshot
Comparative Morphology of the Stingless Bees (Apidae, Meliponini) and Its Phylogenetic Relevance
inferred← citeshttps://doi.org/10.1360/sste-2019-0113openalex-snapshot
亚洲古近纪哺乳动物群交流及其反映的古地理格局
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New Information on Tataouinea hannibalis from the Early Cretaceous of Tunisia and Implications for the Tempo and Mode of Rebbachisaurid Sauropod Evolution
inferred← citeshttps://doi.org/10.1371/journal.pone.0154403openalex-snapshot
A New Centrosaurine Ceratopsid, Machairoceratops cronusi gen et sp. nov., from the Upper Sand Member of the Wahweap Formation (Middle Campanian), Southern Utah
inferred← citeshttps://doi.org/10.1371/journal.pone.0163157openalex-snapshot
Early Gnathostome Phylogeny Revisited: Multiple Method Consensus
inferred← citeshttps://doi.org/10.1371/journal.pone.0185301openalex-snapshot
The first hyaenodont from the late Oligocene Nsungwe Formation of Tanzania: Paleoecological insights into the Paleogene-Neogene carnivore transition
inferred← citeshttps://doi.org/10.1371/journal.pone.0211412openalex-snapshot
A new African Titanosaurian Sauropod Dinosaur from the middle Cretaceous Galula Formation (Mtuka Member), Rukwa Rift Basin, Southwestern Tanzania
inferred← citeshttps://doi.org/10.1371/journal.pone.0212942openalex-snapshot
Illustrating phylogenetic placement of fossils using RoguePlots: An example from ichneumonid parasitoid wasps (Hymenoptera, Ichneumonidae) and an extensive morphological matrix
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Bridging Darwin's Origin of Species & Wegener's Origin of Continents and Oceans:
inferred← citeshttps://doi.org/10.1590/2175-7860202475043openalex-snapshot
Aves and Fungi interactions in a review of mycophagy and its associations in wildlife and industry
inferred← citeshttps://doi.org/10.1642/auk-14-203.1openalex-snapshot
Rhetoric vs. reality: A commentary on “Bird Origins Anew” by A. Feduccia
inferred← citeshttps://doi.org/10.1666/14006openalex-snapshot
Phylogenetic signal in extinction selectivity in Devonian terebratulide brachiopods
inferred← citeshttps://doi.org/10.21203/rs.3.rs-29165/v1openalex-snapshot
Molecular and morphological clocks for estimating evolutionary divergence times
inferred← citeshttps://doi.org/10.21203/rs.3.rs-29165/v2openalex-snapshot
Molecular and morphological clocks for estimating evolutionary divergence times
inferred← citeshttps://doi.org/10.21203/rs.3.rs-29165/v3openalex-snapshot
Molecular and morphological clocks for estimating evolutionary divergence times
inferred← citeshttps://doi.org/10.24072/pcjournal.70openalex-snapshot
A bird’s white-eye view on avian sex chromosome evolution
inferred← citeshttps://doi.org/10.26879/1009openalex-snapshot
Chatham Island Paleocene fossils provide insight into the palaeobiology, evolution, and diversity of early penguins (Aves, Sphenisciformes)
inferred← citeshttps://doi.org/10.32942/osf.io/r23j8openalex-snapshot
Handling Character Dependency in Phylogenetic Inference: Extensive Performance Testing of Assumptions and Solutions Using Simulated Data
inferred← citeshttps://doi.org/10.3389/feart.2022.899562openalex-snapshot
So Volcanoes Created the Dinosaurs? A Quantitative Characterization of the Early Evolution of Terrestrial Pan-Aves
inferred← citeshttps://doi.org/10.3389/fevo.2020.00183openalex-snapshot
Ignoring Fossil Age Uncertainty Leads to Inaccurate Topology and Divergence Time Estimates in Time Calibrated Tree Inference
inferred← citeshttps://doi.org/10.3389/fmicb.2017.00725openalex-snapshot
Evolutionary Biology Needs Wild Microbiomes
inferred← citeshttps://doi.org/10.3390/biology11081185openalex-snapshot
Integrative Phylogenetics: Tools for Palaeontologists to Explore the Tree of Life
inferred← citeshttps://doi.org/10.3390/d12040164openalex-snapshot
Deep-Time Demographic Inference Suggests Ecological Release as Driver of Neoavian Adaptive Radiation
inferred← citeshttps://doi.org/10.3838/jjo.67.57openalex-snapshot
Hesperornithiformes: the Origin and Evolution of the Cretaceous Diving Birds
inferred← citeshttps://doi.org/10.6084/m9.figshare.14583455openalex-snapshot
Additional file 1 of Molecular and morphological clocks for estimating evolutionary divergence times
inferred← citeshttps://doi.org/10.7287/peerj.1658v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Taxonomic and systematic revisions to the North American Nimravidae (Mammalia, Carnivora) (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.1658v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Taxonomic and systematic revisions to the North American Nimravidae (Mammalia, Carnivora) (v0.2)"
inferred← citeshttps://doi.org/10.7287/peerj.9368v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Tip dating with fossil sites and stratigraphic sequences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.9368v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Tip dating with fossil sites and stratigraphic sequences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.9368v0.1/reviews/3openalex-snapshot
Peer Review #3 of "Tip dating with fossil sites and stratigraphic sequences (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.9368v0.2/reviews/2openalex-snapshot
Peer Review #2 of "Tip dating with fossil sites and stratigraphic sequences (v0.2)"
inferred← citeshttps://doi.org/10.7554/elife.81092openalex-snapshot
Microstructural and crystallographic evolution of palaeognath (Aves) eggshells
inferred← citeshttps://doi.org/10.7717/peerj.1658openalex-snapshot
Taxonomic and systematic revisions to the North American Nimravidae (Mammalia, Carnivora)
inferred← citeshttps://doi.org/10.7717/peerj.21146openalex-snapshot
Body reconstruction and size estimation of plesiosaurs
inferred← citeshttps://doi.org/10.7717/peerj.2639openalex-snapshot
Hyainailourine and teratodontine cranial material from the late Eocene of Egypt and the application of parsimony and Bayesian methods to the phylogeny and biogeography of Hyaenodonta (Placentalia, Mammalia)
inferred← citeshttps://doi.org/10.7717/peerj.3055openalex-snapshot
Specimen-level phylogenetics in paleontology using the Fossilized Birth-Death model with sampled ancestors
inferred← citeshttps://doi.org/10.7717/peerj.3782openalex-snapshot
Inferring ‘weak spots’ in phylogenetic trees: application to mosasauroid nomenclature
inferred← citeshttps://doi.org/10.7717/peerj.7364openalex-snapshot
A revision of the diagnosis and affinities of the metriorhynchoids (Crocodylomorpha, Thalattosuchia) from the Rosso Ammonitico Veronese Formation (Jurassic of Italy) using specimen-level analyses
inferred← citeshttps://doi.org/10.7717/peerj.9368openalex-snapshot
Tip dating with fossil sites and stratigraphic sequences
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.