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How Ecology and Landscape Dynamics Shape Phylogenetic Trees

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Outgoing claims: the papers this work cites, builds on, or argues with.

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Explosive speciation in cichlid fishes of the African Great Lakes: a dynamic model of adaptive radiation
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Tempo and Mode in Evolution
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Random Discrete Structures
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Probability Distributions on Cladograms
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On the impossibility of coexistence of infinitely many strategies
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Reconstructing shifts in diversification rates on phylogenetic trees
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Hybridization and adaptive radiation
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Estimating diversification rates from phylogenetic information
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Diversity dynamics: molecular phylogenies need the fossil record
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Diversity in time and space: wanted dead and alive
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Phylogenetic estimates of speciation and extinction rates for testing ecological and evolutionary hypotheses
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Why does diversification slow down?
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Constant extinction, constrained diversification, and uncoordinated stasis in North American mammals
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The Cichlid Fish Assemblages of Lake Tanganyika: Ecology, Behaviour and Evolution of its Species Flocks
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Ecology and the origin of species
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Volatility and the Phanerozoic decline of background extinction intensity
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Evolutionarily singular strategies and the adaptive growth and branching of the evolutionary tree
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Alternative models of vertebrate speciation in Amazonia: an overview
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Speciation along environmental gradients
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Eutrophication causes speciation reversal in whitefish adaptive radiations
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Dynamic patterns of adaptive radiation
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Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates
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Mammalian phylogeny reveals recent diversification rate shifts
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Reconciling molecular phylogenies with the fossil record
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Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas
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Tempo and mode of evolution revealed from molecular phylogenies.
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Evidence from molecular systematics for decreased avian diversification in the pleistocene Epoch.
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Key evolutionary innovations and their ecological mechanisms
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Contingent Predictability in Evolution: Key Traits and Diversification
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Which Random Processes Describe the Tree of Life? A Large-Scale Study of Phylogenetic Tree Imbalance
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Estimating a Binary Character's Effect on Speciation and Extinction
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Species Concepts and Species Delimitation
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Evolution of Niche Width
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Equilibrium Models of Evolutionary Species Diversity and the Number of Empty Niches
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Testing Whether Certain Traits have Caused Amplified Diversification: An Improved Method Based on a Model of Random Speciation and Extinction
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Inferring Evolutionary Process from Phylogenetic Tree Shape
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Simultaneous Quaternary Radiations of Three Damselfly Clades across the Holarctic
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Ecology Predicts Large‐Scale Patterns of Phylogenetic Diversification in Birds
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The Ecological Dynamics of Clade Diversification and Community Assembly
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Stochastic Models of Phylogeny and the Evolution of Diversity
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Linking the Investigations of Character Evolution and Species Diversification
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Speciation Rates Decline through Time in Individual-Based Models of Speciation and Extinction
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APE: Analyses of Phylogenetics and Evolution in R language
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apTreeshape: statistical analysis of phylogenetic tree shape
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ON SOME MODES OF POPULATION GROWTH LEADING TO R. A. FISHER'S LOGARITHMIC SERIES DISTRIBUTION
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The Ecology of Adaptive Radiation
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Recent Diversification Rates in North American Tiger Beetles Estimated from a Dated mtDNA Phylogenetic Tree
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When Can Decreasing Diversification Rates Be Detected with Molecular Phylogenies and the Fossil Record?
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Quantitative Traits and Diversification
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The Shape and Temporal Dynamics of Phylogenetic Trees Arising from Geographic Speciation
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Integrating ecology into macroevolutionary research
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Sexual selection and taxonomic diversity in passerine birds
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Species richness among birds: body size, life history, sexual selection or ecology?
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Explosive speciation in the New World Dendroica warblers
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African cichlid fish: a model system in adaptive radiation research
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Density-dependent diversification in North American wood warblers
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Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record
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Repeated trans-watershed hybridization among haplochromine cichlids (Cichlidae) was triggered by Neogene landscape evolution
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Competition both drives and impedes diversification in a model adaptive radiation
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A composite estimate of primate phylogeny
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Speciation in multidimensional evolutionary space
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Phylogenetic approaches for studying diversification
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ADAPTIVE RADIATION DRIVEN BY THE INTERPLAY OF ECO-EVOLUTIONARY AND LANDSCAPE DYNAMICS
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PERSPECTIVE: MODELS OF SPECIATION: WHAT HAVE WE LEARNED IN 40 YEARS?
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CONTRASTING PATTERNS OF RADIATION IN AFRICAN AND AUSTRALIAN RESTIONACEAE
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RAPID CLADOGENESIS IN MARINE FISHES REVISITED
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DIVERGENT TIMING AND PATTERNS OF SPECIES ACCUMULATION IN LOWLAND AND HIGHLAND NEOTROPICAL BIRDS
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Competitive speciation
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Sympatric speciation: a simulation model
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Are the Northern Andes a species pump for Neotropical birds? Phylogenetics and biogeography of a clade of Neotropical tanagers (Aves: Thraupini)
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The limitations of adaptive dynamics as a model of evolution
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20 Questions on Adaptive Dynamics
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Does competitive divergence occur if assortative mating is costly?
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Competitive speciation and costs of choosiness
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ECOLOGICAL FACTORS IN SPECIATION
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ORIGIN AND EVOLUTION OF CONTINENTAL BIOTAS: SPECIATION AND HISTORICAL CONGRUENCE WITHIN THE AUSTRALIAN AVIFAUNA
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COMPARISONS OF OBSERVED PHYLOGENETIC TOPOLOGIES WITH NULL EXPECTATIONS AMONG THREE MONOPHYLETIC LINEAGES
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PATTERNS IN TREE BALANCE AMONG CLADISTIC, PHENETIC, AND RANDOMLY GENERATED PHYLOGENETIC TREES
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ADAPTIVE RADIATION AND THE TOPOLOGY OF LARGE PHYLOGENIES
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TREE BALANCE AND TREE COMPLETENESS
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EVOLUTION OF PHENOTYPIC CLUSTERS THROUGH COMPETITION AND LOCAL ADAPTATION ALONG AN ENVIRONMENTAL GRADIENT
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EXPLOSIVE EVOLUTIONARY RADIATIONS: DECREASING SPECIATION OR INCREASING EXTINCTION THROUGH TIME?
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NEUTRAL BIODIVERSITY THEORY CAN EXPLAIN THE IMBALANCE OF PHYLOGENETIC TREES BUT NOT THE TEMPO OF THEIR DIVERSIFICATION
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HYBRIDIZATION, SPECIES COLLAPSE, AND SPECIES REEMERGENCE AFTER DISTURBANCE TO PREMATING MECHANISMS OF REPRODUCTIVE ISOLATION
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IS YOUR PHYLOGENY INFORMATIVE? MEASURING THE POWER OF COMPARATIVE METHODS
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Quantifying surface‐area changes of volcanic islands driven by Pleistocene sea‐level cycles: biogeographical implications for the Macaronesian archipelagos
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Adaptive Radiation: Contrasting Theory with Data
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Complexity and Diversity
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Interplay Between Changing Climate and Species’ Ecology Drives Macroevolutionary Dynamics
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Speciation in Amazonian Forest Birds
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Birth-Death Models in Macroevolution
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Why are tropical rain forests so species rich? Classifying, reviewing and evaluating theories
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Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today
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Density-Dependent Cladogenesis in Birds
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The descent of man and selection in relation to sex
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What Darwin's Finches Can Teach Us about the Evolutionary Origin and Regulation of Biodiversity
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Origination and extinction components of taxonomic diversity: Paleozoic and post-Paleozoic dynamics
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Systematics and the Origin of Species
inferredcites →https://doi.org/10.2307/2332624openalex-snapshot
On Some Modes of Population Growth Leading to R. A. Fisher's Logarithmic Series Distribution
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THE MAJOR FEATURES OF EVOLUTION
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On the Origin of Species by Means of Natural Selection
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The Statistical Analysis of Series of Events.
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Species Richness Covaries with Mating System in Birds
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Ecology, Genetics, and Evolution of Metapopulations
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Ecology and Evolution of Darwin's Finches
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R: A Language and Environment for Statistical Computing
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Animal Species and Evolution
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Extinction: bad genes or bad luck?
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Diversity and the tropical rain forest
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Species diversity in space and time
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Bird speciation on the Australian Continent
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The Cichlid fishes of Lake Nabugabo, Uganda

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Effects of archipelago geo-environmental dynamics on phylogenetic tree shape
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The Big Nine Clades of Amazonian Fishes
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The Species Problem from the Modeler’s Point of View
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Integrating selection, niche, and diversification into a hierarchical conceptual framework
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Feeding ecology has shaped the evolution of modern sharks
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Evolution in a Community Context: On Integrating Ecological Interactions and Macroevolution
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Investigating Biotic Interactions in Deep Time
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Clade diversification dynamics and the biotic and abiotic controls of speciation and extinction rates
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Distance metrics for ranked evolutionary trees
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Diversity and Coevolutionary Dynamics in High-Dimensional Phenotype Spaces
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Extinction and hybridization in a neutral model of speciation
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Biogeographical Modeling of Alien Worlds
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Incorporating alignment uncertainty into Felsenstein’s phylogenetic bootstrap to improve its reliability
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Patch biogeography under intermittent barriers: macroevolutionary consequences of microevolutionary processes
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Opening the species box: what parsimonious microscopic models of speciation have to say about macroevolution
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Modeling Mito-nuclear Compatibility and Its Role in Species Identification
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Barrier Displacement on a Neutral Landscape: Toward a Theory of Continental Biogeography
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Ranked Tree Shapes, Nonrandom Extinctions, and the Loss of Phylogenetic Diversity
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Signatures of Microevolutionary Processes in Phylogenetic Patterns
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Species Selection Regime and Phylogenetic Tree Shape
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Comparing spatial diversification and meta-population models in the Indo-Australian Archipelago
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Understanding how biodiversity unfolds through time under neutral theory
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Reading Yule in light of the history and present of macroevolution
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Topology and habitat assortativity drive neutral and adaptive diversification in spatial graphs
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Reticulate evolution in a neutral model: speciation, extinctions, and hybridizations
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Exponential diversity-dependent diversification emerges from an individual-based model with Lotka-Volterra competition
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TiPS : Rapidly simulating trajectories and phylogenies from compartmental models
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Assessing species saturation: conceptual and methodological challenges
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Allopatry increases the balance of phylogenetic trees during radiation under neutral speciation
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Biodiversity dynamics in landscapes with fluctuating connectivity
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Importance of interindividual interactions in eco‐evolutionary population dynamics: The rise of demo‐genetic agent‐based models
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The influence of ecological and geographic limits on the evolution of species distributions and diversity
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Towards a genetic theory of island biogeography: Inferring processes from multidimensional community‐scale data
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Inferring the ecological and evolutionary determinants of community genetic diversity
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Genetic Diversity of Dominant Plant Species in Tropical Land-Use Systems in Sumatra, Indonesia
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Inferring epidemiological parameters from phylogenies using regression-ABC: A comparative study
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Genetic Diversity and Phylogenetic Position of Traditional Rice (Oryza sativa L.) Landraces: A Case Study of South Kalimantan in Indonesia
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Shallow tillage mitigates plant competition by increasing diversity and altering plant community assembly process
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Biodiversity Dynamics on Islands: Explicitly Accounting for Causality in Mechanistic Models
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Stochastic models for the inference of life evolution (SMILE)
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Modèles aléatoires pour l’inférence de l’évolution du vivant / Stochastic models for the inference of life evolution (SMILE)
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A influência de interações interespecíficas na dinâmica evolutiva da cooperação
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Plant genetic diversity in tropical lowland rainforest transformation systems in Sumatra (Indonesia)
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Rapid speciation in Harlequin Toads ( Anura : Bufonidae ) endemic to the Sierra Nevada de Santa Marta
inferred← citeshttps://doi.org/10.70675/98c36434za02ez46b7zb628z3b08e3325812openalex-snapshot
Diversité globale des poissons coralliens : histoire évolutive et influence de l'environnement passé
inferred← citeshttps://doi.org/10.70675/bca8c5c2z7a03z4742zb447ze88845f1e109openalex-snapshot
Phylodynamique des pathogènes viraux par calcul bayésien approché
inferred← citeshttps://doi.org/10.7554/elife.23804openalex-snapshot
Towards a mechanistic foundation of evolutionary theory
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