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Complex Models of Sequence Evolution Require Accurate Estimators as Exemplified with the Invariable Site Plus Gamma Model
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What this work says
Outgoing claims: the papers this work cites, builds on, or argues with.
inferredcites →https://doi.org/10.1007/bf00160154openalex-snapshot
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
inferredcites →https://doi.org/10.1007/bf01731581openalex-snapshot
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
inferredcites →https://doi.org/10.1016/j.mbs.2007.09.001openalex-snapshot
Identifying evolutionary trees and substitution parameters for the general Markov model with invariable sites
inferredcites →https://doi.org/10.1023/a:1027314112438openalex-snapshot
Are Guinea Pigs Rodents? The Importance of Adequate Models in Molecular Phylogenetics
inferredcites →https://doi.org/10.1080/106351501753328839openalex-snapshot
Maximum Likelihood Estimation of Phylogenetic Trees Is Consistent When Substitution Rates Vary According to the Invariable Sites plus Gamma Distribution
inferredcites →https://doi.org/10.1093/acprof:oso/9780198567028.001.0001openalex-snapshot
Computational Molecular Evolution
inferredcites →https://doi.org/10.1093/bioinformatics/13.3.235openalex-snapshot
Seq-Gen: an application for the Monte Carlo simulation of DNA sequence evolution along phylogenetic trees
inferredcites →https://doi.org/10.1093/bioinformatics/14.9.817openalex-snapshot
MODELTEST: testing the model of DNA substitution.
inferredcites →https://doi.org/10.1093/bioinformatics/bti1125openalex-snapshot
A Gamma mixture model better accounts for among site rate heterogeneity
inferredcites →https://doi.org/10.1093/bioinformatics/btu033openalex-snapshot
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
inferredcites →https://doi.org/10.1093/molbev/msu300openalex-snapshot
IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a026045openalex-snapshot
The Effect of Taxon Sampling on Estimating Rate Heterogeneity Parameters of Maximum-Likelihood Models
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a040235openalex-snapshot
Maximum likelihood estimation of the heterogeneity of substitution rate among nucleotide sites.
inferredcites →https://doi.org/10.1093/sysbio/syq010openalex-snapshot
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
inferredcites →https://doi.org/10.1093/sysbio/syr023openalex-snapshot
On Rogers' Proof of Identifiability for the GTR + Γ + I Model
inferredcites →https://doi.org/10.1093/sysbio/syr100openalex-snapshot
BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics
inferredcites →https://doi.org/10.1093/sysbio/sys029openalex-snapshot
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space
inferredcites →https://doi.org/10.1111/j.2517-6161.1977.tb01600.xopenalex-snapshot
Maximum Likelihood from Incomplete Data Via the EM Algorithm
inferredcites →https://doi.org/10.1371/journal.pone.0095722openalex-snapshot
The Impact of Modelling Rate Heterogeneity among Sites on Phylogenetic Estimates of Intraspecific Evolutionary Rates and Timescales
inferredcites →https://doi.org/10.2307/2005713openalex-snapshot
Algorithms for Minimization Without Derivatives
What points at this work
Incoming claims: where this work appears in other papers’ reference lists and arguments.
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inferred← citeshttps://doi.org/10.1071/is22035openalex-snapshot
A remarkable troglomorphic ant, Yavnella laventa sp. nov. (Hymenoptera: Formicidae: Leptanillinae), identified as the first known worker of Yavnella Kugler by phylogenomic inference
inferred← citeshttps://doi.org/10.1093/genetics/iyab015openalex-snapshot
Genetic variation in aneuploidy prevalence and tolerance across Saccharomyces cerevisiae lineages
inferred← citeshttps://doi.org/10.1093/sysbio/syag037openalex-snapshot
Biased Estimates of Phylogenetic Branch Lengths Resulting from the Discretised Gamma Model of Site Rate Heterogeneity
inferred← citeshttps://doi.org/10.1093/sysbio/syy077openalex-snapshot
Morphological Data Sets Fit a Common Mechanism Much More Poorly than DNA Sequences and Call Into Question the Mkv Model
inferred← citeshttps://doi.org/10.1093/sysbio/syz021openalex-snapshot
The Relative Importance of Modeling Site Pattern Heterogeneity Versus Partition-Wise Heterotachy in Phylogenomic Inference
inferred← citeshttps://doi.org/10.1093/ve/veac111openalex-snapshot
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Integration of mitogenomic and morphological data disentangles the systematics of Pollenia and establishes a revised phylogenetic hypothesis for the Polleniidae
inferred← citeshttps://doi.org/10.1111/syen.70038openalex-snapshot
Exploring the phylogeny of the Leptanillinae (Hymenoptera: Formicidae) through high‐throughput sequencing and Bayesian total‐evidence inference, with accommodation of systematic bias
inferred← citeshttps://doi.org/10.1126/science.adh9443openalex-snapshot
An evolutionary epigenetic clock in plants
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First Field Evidence On Circulation and Vertical Transmission of West Nile Virus Lineage-1a in Mosquitoes of Southern Iran
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Characterizing conflict and congruence of molecular evolution across organellar genome sequences for phylogenetics in land plants
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Extensive Mitogenomic Remodeling Delineates the Family-Level Split in Velvet Worms
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