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Reticulate Evolution Helps Explain Apparent Homoplasy in Floral Biology and Pollination in Baobabs (Adansonia; Bombacoideae; Malvaceae)

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What this work says

Outgoing claims: the papers this work cites, builds on, or argues with.

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Allele phasing has minimal impact on phylogenetic reconstruction from targeted nuclear gene sequences in a case study of Artocarpus
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Comparison of taxon‐specific versus general locus sets for targeted sequence capture in plant phylogenomics
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Target sequence capture of nuclear‐encoded genes for phylogenetic analysis in ferns
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Concordance trees, concordance factors, and the exploration of reticulate genealogy
inferredcites →https://doi.org/10.1002/tax.616006openalex-snapshot
Morphology, ploidy and molecular phylogenetics reveal a new diploid species from Africa in the baobab genus Adansonia (Malvaceae: Bombacoideae)
inferredcites →https://doi.org/10.1007/978-3-7091-3972-1_2openalex-snapshot
Paleogeography and historical phytogeography (paleochorology) in the Neophyticum
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Pollination and phenology of flowers in the canopy of two contrasting rain forest types in Amazonia, Colombia
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Paleogeography and historical phytogeography (paleochorology) in the Neophyticum
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A simple and efficient method for isolating RNA from pine trees
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inferredcites →https://doi.org/10.1016/j.sajb.2017.01.007openalex-snapshot
Baobabs (Adansonia digitata L.) are self-incompatible and ‘male’ trees can produce fruit if hand-pollinated
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Adaptive Genetic Exchange: A Tangled History of Admixture and Evolutionary Innovation
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Quartet MaxCut: A fast algorithm for amalgamating quartet trees
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Re-evaluating the phylogeny of allopolyploid Gossypium L.
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Revisiting the phylogeny of Bombacoideae (Malvaceae): Novel relationships, morphologically cohesive clades, and a new tribal classification based on multilocus phylogenetic analyses
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Polyploidy and the evolutionary history of cotton
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Inference of reticulation in outcrossing allopolyploid taxa: caveats, likelihood and perspectives
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An economic method for the fluorescent labeling of PCR fragments
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Is homoploid hybrid speciation that rare? An empiricist’s view
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Ancestral polyploidy in seed plants and angiosperms
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Persistent near-tropical warmth on the Antarctic continent during the early Eocene epoch
inferredcites →https://doi.org/10.1038/nature11798openalex-snapshot
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
inferredcites →https://doi.org/10.1038/nbt.1883openalex-snapshot
Full-length transcriptome assembly from RNA-Seq data without a reference genome
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jModelTest 2: more models, new heuristics and parallel computing
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The evolutionary significance of ancient genome duplications
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Pollinator behaviour and the evolution of Louisiana iris hybrid zones
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Maximum likelihood inference of reticulate evolutionary histories
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Ancient single origin for Malagasy primates.
inferredcites →https://doi.org/10.1080/106351598260879openalex-snapshot
Biogeography and Floral Evolution of Baobabs Adansonia, Bombacaceae as Inferred From Multiple Data Sets
inferredcites →https://doi.org/10.1093/aob/mct230openalex-snapshot
Nuclear microsatellite variation in Malagasy baobabs (Adansonia, Bombacoideae, Malvaceae) reveals past hybridization and introgression
inferredcites →https://doi.org/10.1093/bioinformatics/17.8.754openalex-snapshot
MRBAYES: Bayesian inference of phylogenetic trees
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MrBayes 3: Bayesian phylogenetic inference under mixed models
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RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
inferredcites →https://doi.org/10.1093/bioinformatics/btp324openalex-snapshot
Fast and accurate short read alignment with Burrows–Wheeler transform
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BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis
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RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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Trimmomatic: a flexible trimmer for Illumina sequence data
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ASTRAL: genome-scale coalescent-based species tree estimation
inferredcites →https://doi.org/10.1093/botlinnean/box004openalex-snapshot
Phylogenetic relationships of a major diversification of Croton (Euphorbiaceae) in the western Indian Ocean region
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Detecting Phylogenetic Breakpoints and Discordance from Genome-Wide Alignments for Species Tree Reconstruction
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Bayesian Estimation of Concordance among Gene Trees
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Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics
inferredcites →https://doi.org/10.1093/molbev/msx235openalex-snapshot
PhyloNetworks: A Package for Phylogenetic Networks
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Bayesian Inference of Species Networks from Multilocus Sequence Data
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MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform
inferredcites →https://doi.org/10.1093/oso/9780195069174.003.0004openalex-snapshot
lntrogression and Its Consequences in Plants
inferredcites →https://doi.org/10.1093/oxfordjournals.molbev.a003725openalex-snapshot
Recombination Analysis Using Directed Graphical Models
inferredcites →https://doi.org/10.1093/sysbio/syq084openalex-snapshot
Coalescent Histories on Phylogenetic Networks and Detection of Hybridization Despite Incomplete Lineage Sorting
inferredcites →https://doi.org/10.1093/sysbio/syv039openalex-snapshot
Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant SpeciesArabidopsis thaliana(L.) Heynh
inferredcites →https://doi.org/10.1093/sysbio/syw036openalex-snapshot
Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics
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Phylogenetic Comparative Methods on Phylogenetic Networks with Reticulations
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Adaptive introgression: a plant perspective
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Introgressive hybridization facilitates adaptive divergence in a recent radiation of monkeyflowers
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Introduction. Extent, processes and evolutionary impact of interspecific hybridization in animals
inferredcites →https://doi.org/10.1098/rstb.2008.0081openalex-snapshot
Hybridization, ecological races and the nature of species: empirical evidence for the ease of speciation
inferredcites →https://doi.org/10.1105/tpc.160370openalex-snapshot
Transfer and Origin of Adaptations through Natural Hybridization: Were Anderson and Stebbins Right?
inferredcites →https://doi.org/10.1111/1755-0998.12972openalex-snapshot
Inferring introgression using RADseq and DFOIL: Power and pitfalls revealed in a case study of spiny lizards (Sceloporus)
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A MODEL FOR CHLOROPLAST CAPTURE
inferredcites →https://doi.org/10.1111/j.1365-294x.2009.04144.xopenalex-snapshot
Chloroplast DNA phylogeography suggests a West African centre of origin for the baobab,Adansonia digitataL. (Bombacoideae, Malvaceae)
inferredcites →https://doi.org/10.1111/j.1744-7429.2006.00112.xopenalex-snapshot
Nectarivory by Endemic Malagasy Fruit Bats During the Dry Season1
inferredcites →https://doi.org/10.1111/jbi.12981openalex-snapshot
Island hopping, long‐distance dispersal and species radiation in the Western Indian Ocean: historical biogeography of the Coffeeae alliance (Rubiaceae)
inferredcites →https://doi.org/10.1111/jipb.12746openalex-snapshot
A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?
inferredcites →https://doi.org/10.1111/jse.12174openalex-snapshot
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches
inferredcites →https://doi.org/10.1111/mec.13557openalex-snapshot
A genomic perspective on hybridization and speciation
inferredcites →https://doi.org/10.1111/nph.15312openalex-snapshot
Bridging the micro‐ and macroevolutionary levels in phylogenomics: Hyb‐Seq solves relationships from populations to species and above
inferredcites →https://doi.org/10.1146/annurev.arplant.043008.092039openalex-snapshot
The Role of Hybridization in Plant Speciation
inferredcites →https://doi.org/10.1146/annurev.es.23.110192.001321openalex-snapshot
Natural Hybridization as an Evolutionary Process
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HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees
inferredcites →https://doi.org/10.1186/1471-2105-13-s19-s12openalex-snapshot
Inference of reticulate evolutionary histories by maximum likelihood: the performance of information criteria
inferredcites →https://doi.org/10.1186/1756-0500-7-829openalex-snapshot
BamBam: genome sequence analysis tools for biologists
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Hybrid-Lambda: simulation of multiple merger and Kingman gene genealogies in species networks and species trees
inferredcites →https://doi.org/10.1186/s12859-018-2129-yopenalex-snapshot
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
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Evaluating allopolyploid origins in strawberries (Fragaria) using haplotypes generated from target capture sequencing
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Retrieval of hundreds of nuclear loci from herbarium specimens
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Resolving Difficult Phylogenetic Questions: Why More Sequences Are Not Enough
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The Genomics of Speciation in Drosophila: Diversity, Divergence, and Introgression Estimated Using Low-Coverage Genome Sequencing
inferredcites →https://doi.org/10.1371/journal.pgen.1005896openalex-snapshot
Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting
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The Impact of Paralogy on Phylogenomic Studies – A Case Study on Annelid Relationships
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Targeted Capture of Homoeologous Coding and Noncoding Sequence in Polyploid Cotton
inferredcites →https://doi.org/10.19182/bft2011.307.a20482openalex-snapshot
Les Sphingidae, probables pollinisateurs des baobabs malgaches
inferredcites →https://doi.org/10.19182/bft2014.320.a20545openalex-snapshot
Adansonia madagascariensis, une hypothèse d'hydrochorie marine
inferredcites →https://doi.org/10.2134/agronmonogr57.2013.0020openalex-snapshot
Taxonomy and Evolution of the Cotton Genus, Gossypium
inferredcites →https://doi.org/10.2307/2395198openalex-snapshot
Some Aspects of Plant Geography of the Northern Hemisphere During the Late Cretaceous and Tertiary
inferredcites →https://doi.org/10.2307/2399883openalex-snapshot
The Comparative Pollination and Floral Biology of Baobabs (Adansonia- Bombacaceae)
inferredcites →https://doi.org/10.2307/2399893openalex-snapshot
A Systematic Revision of Adansonia (Bombacaceae)
inferredcites →https://doi.org/10.2307/2410309openalex-snapshot
Hybrid Zones and the Evolutionary Process.
inferredcites →https://doi.org/10.3389/fpls.2015.00710openalex-snapshot
Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae)
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Targeted sequence capture as a powerful tool for evolutionary analysis1
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The wondrous cycles of polyploidy in plants
inferredcites →https://doi.org/10.3732/apps.1400042openalex-snapshot
Hyb‐Seq: Combining target enrichment and genome skimming for plant phylogenomics
inferredcites →https://doi.org/10.3732/apps.1600016openalex-snapshot
HybPiper: Extracting coding sequence and introns for phylogenetics from high‐throughput sequencing reads using target enrichment
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Perspectives on the origin of the floristic similarity between Eastern Asia and Eastern North America

What points at this work

Incoming claims: where this work appears in other papers’ reference lists and arguments.

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Genetic diversity of Malagasy baobabs: implications for conservation
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Reticulate evolution, lateral gene transfer, and innovation in plants
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All tangled up: Unraveling phylogenetics and reticulate evolution in the vining ferns, Lygodium (Schizaeales)
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Phylogenomics, historical biogeography, and diversification of leaf traits in the Malagasy‐endemic genus Uncarina (Pedaliaceae)
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Target capture and genome skimming for plant diversity studies
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A roadmap of phylogenomic methods for studying polyploid plant genera
inferred← citeshttps://doi.org/10.1002/ece3.10190openalex-snapshot
Nano‐Strainer : A workflow for the identification of single‐copy nuclear loci for plant systematic studies, using target capture kits and Oxford Nanopore long reads
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Phylogeny of Prosthechea (Laeliinae, Orchidaceae) based on nrITS and plastid DNA sequences: Reassessing the lumper‐splitter debate and shedding light on the evolution of this Neotropical genus
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Phylogenomic analysis of Madagascar's baobabs reveals admixed populations and supports resurrection of a previously described species
inferred← citeshttps://doi.org/10.1007/s00285-022-01847-8openalex-snapshot
Identifiability of local and global features of phylogenetic networks from average distances
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Rediscovery and morpho-molecular characterization of three astome ciliates, with new insights into eco-evolutionary associations of astomes with their annelid hosts
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Genome-wide RAD sequencing resolves the evolutionary history of serrate leaf Juniperus and reveals discordance with chloroplast phylogeny
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Genome-wide data reveal extensive gene flow during the diversification of the western rattlesnakes (Viperidae: Crotalinae: Crotalus)
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Reticulate evolution in terrestrial snails of Euhadra peliomphala species complex
inferred← citeshttps://doi.org/10.1038/s41467-024-53157-wopenalex-snapshot
Chromosome-level baobab genome illuminates its evolutionary trajectory and environmental adaptation
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Scaling up Bayesian population phylogenomics through virtual dimension reduction
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The rise of baobab trees in Madagascar
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Navigating phylogenetic conflict and evolutionary inference in plants with target-capture data
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Phylogenetic networks empower biodiversity research
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Divergence and reticulation in the Mexican white oaks: ecological and phylogenomic evidence on species limits and phylogenetic networks in the Quercus laeta complex (Fagaceae)
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Phylogenomic perspectives on speciation and reproductive isolation in a North American biodiversity hotspot: an example using California sages (Salvia subgenus Audibertia: Lamiaceae)
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Assessing the fit of the multi-species network coalescent to multi-locus data
inferred← citeshttps://doi.org/10.1093/evolut/qpad011openalex-snapshot
Widespread reticulate evolution in an adaptive radiation
inferred← citeshttps://doi.org/10.1093/gbe/evag160openalex-snapshot
Evidence for Cryptic Sex in Escovopsis , a Mycoparasite in the Fungus-Growing Ant Symbiosis
inferred← citeshttps://doi.org/10.1093/jhered/esag076openalex-snapshot
Evolution in isolation: genetic insights to conserve Madagascar’s biodiversity
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Detecting Introgression in Shallow Phylogenies: How Minor Molecular Clock Deviations Lead to Major Inference Errors
inferred← citeshttps://doi.org/10.1093/sysbio/syaa102openalex-snapshot
A Comprehensive Approach to Detect Hybridization Sheds Light on the Evolution of Earth’s Largest Lizards
inferred← citeshttps://doi.org/10.1093/sysbio/syab032openalex-snapshot
Analysis of Paralogs in Target Enrichment Data Pinpoints Multiple Ancient Polyploidy Events in Alchemilla s.l. (Rosaceae)
inferred← citeshttps://doi.org/10.1093/sysbio/syad015openalex-snapshot
Estimation of species divergence times in presence of cross-species gene flow
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Phylogenomic Discordance is Driven by Wide-Spread Introgression and Incomplete Lineage Sorting During Rapid Species Diversification Within Rattlesnakes (Viperidae: Crotalus and Sistrurus )
inferred← citeshttps://doi.org/10.1093/sysbio/syae024openalex-snapshot
Benefits and Limits of Phasing Alleles for Network Inference of Allopolyploid Complexes
inferred← citeshttps://doi.org/10.1093/sysbio/syag045openalex-snapshot
Evolving View on Phylogenetic Networks
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Do syngameons exist in tropical trees? Challenges to determine their existence and estimate their frequency
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Contrasted histories of organelle and nuclear genomes underlying physiological diversification in a grass species
inferred← citeshttps://doi.org/10.1098/rstb.2023.0310openalex-snapshot
Leveraging graphical model techniques to study evolution on phylogenetic networks
inferred← citeshttps://doi.org/10.1101/2024.04.14.589434openalex-snapshot
Chromosome-level baobab ( Adansonia digitata ) genome illuminates its evolutionary insights
inferred← citeshttps://doi.org/10.1111/btp.13033openalex-snapshot
Evidence for hawkmoth pollination in the chiropterophilous African baobab ( Adansonia digitata )
inferred← citeshttps://doi.org/10.1111/cla.12514openalex-snapshot
Hyb‐Seq provides new insights into the phylogeny and evolution of the Chrysanthemum zawadskii species complex in China
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Phylogenomics and phylogeographic model testing using convolutional neural networks reveal a history of recent admixture in the Canarian Kleinia neriifolia
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Polyploid phylogenetics
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Integrated phylogenomic analyses unveil reticulate evolution in Parthenocissus (Vitaceae), highlighting speciation dynamics in the Himalayan–Hengduan Mountains
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Homoplastic versus xenoplastic evolution: exploring the emergence of key intrinsic and extrinsic traits in the montane genus Soldanella (Primulaceae)
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Historical introgression as a driver of diversification of diploid Picris (Compositae) in the Mediterranean Basin
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Macroevolutionary trends and diversification dynamics in the hindgut order Clevelandellida (Ciliophora, Armophorea)
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Distinct hybridization modes in wide- and narrow-ranged lineages of Causonis (Vitaceae)
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Phylogenomic assessment of the role of hybridization and introgression in trait evolution
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Accounting for Within-Species Variation in Continuous Trait Evolution on a Phylogenetic Network
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Exploring the Distribution of Phylogenetic Networks Generated Under a Birth-Death-Hybridization Process
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Trait evolution with incomplete lineage sorting and gene flow: the Gaussian Coalescent model
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A nuclear target sequence capture probe set for phylogeny reconstruction of the charismatic plant family Bignoniaceae
inferred← citeshttps://doi.org/10.3389/fpls.2022.767635openalex-snapshot
Reticulate Evolution in AA-Genome Wild Rice in Australia
inferred← citeshttps://doi.org/10.3389/fpls.2022.850521openalex-snapshot
Localized Phylogenetic Discordance Among Nuclear Loci Due to Incomplete Lineage Sorting and Introgression in the Family of Cotton and Cacao (Malvaceae)
inferred← citeshttps://doi.org/10.3389/fpls.2025.1717745openalex-snapshot
How much can reticulate evolution entangle plant systematics? Revisiting subfamilial classification of the Malvatheca clade (Malvaceae) on the basis of phylogenomics
inferred← citeshttps://doi.org/10.3390/genes16070846openalex-snapshot
Mitogenome Characteristics and Intracellular Gene Transfer Analysis of Four Adansonia Species
inferred← citeshttps://doi.org/10.3897/phytokeys.205.85866openalex-snapshot
Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)
inferred← citeshttps://doi.org/10.3917/pls.562.0092openalex-snapshot
D’où viennent les baobabs ?
inferred← citeshttps://doi.org/10.7287/peerj.12418v0.1/reviews/1openalex-snapshot
Peer Review #1 of "Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12418v0.1/reviews/2openalex-snapshot
Peer Review #2 of "Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization (v0.1)"
inferred← citeshttps://doi.org/10.7287/peerj.12418v0.2/reviews/1openalex-snapshot
Peer Review #1 of "Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization (v0.2)"
inferred← citeshttps://doi.org/10.7554/elife.63753openalex-snapshot
Determining the probability of hemiplasy in the presence of incomplete lineage sorting and introgression
inferred← citeshttps://doi.org/10.7717/peerj.12418openalex-snapshot
Phylogeny of Crataegus (Rosaceae) based on 257 nuclear loci and chloroplast genomes: evaluating the impact of hybridization
Editorial review for independent work. ICSAC — the Institute for Complexity Science and Advanced Computing — runs a structured editorial panel for researchers publishing outside journals, and publishes on CiteStamp rails. Submission is free and goes through ORCID: icsacinstitute.org/submit.